Wall clock time and date at job start Tue Mar 31 2020 03:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38903 * 119.74030 * 2 1 4 4 C 1.36681 * 120.89282 * 179.97438 * 3 2 1 5 5 C 1.39116 * 119.78967 * 0.02562 * 4 3 2 6 6 N 1.37050 * 134.72653 * 180.02562 * 5 4 3 7 7 H 0.96994 * 124.37553 * 359.97356 * 6 5 4 8 8 N 1.28384 * 111.25542 * 179.97438 * 6 5 4 9 9 C 1.31573 * 111.96696 * 359.97438 * 8 6 5 10 10 C 1.47387 * 126.82470 * 180.26454 * 9 8 6 11 11 O 1.21612 * 120.00532 * 179.68978 * 10 9 8 12 12 N 1.34781 * 120.00096 * 359.68390 * 10 9 8 13 13 C 1.46499 * 120.00221 * 180.02562 * 12 10 9 14 14 C 1.53946 * 113.74166 * 253.73965 * 13 12 10 15 15 N 1.47804 * 86.03932 * 222.08404 * 14 13 12 16 16 C 1.36935 * 134.46128 * 204.64623 * 15 14 13 17 17 H 1.08003 * 120.00609 * 179.86939 * 16 15 14 18 18 C 1.38816 * 119.99717 * 359.86543 * 16 15 14 19 19 N 1.31615 * 120.00054 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00116 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47358 * 89.99689 * 20 18 16 22 22 H 1.48500 * 109.46911 * 210.00077 * 20 18 16 23 23 H 1.48505 * 109.46725 * 329.99558 * 20 18 16 24 24 C 1.47589 * 91.05078 * 24.54996 * 15 14 13 25 25 C 1.40864 * 119.22374 * 359.97438 * 5 4 3 26 26 C 1.36720 * 119.73919 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46941 * 89.99983 * 1 2 3 28 28 H 1.08996 * 109.47202 * 210.00011 * 1 2 3 29 29 H 1.09004 * 109.46726 * 330.00132 * 1 2 3 30 30 H 1.08003 * 119.54897 * 359.97438 * 3 2 1 31 31 H 1.08005 * 120.10434 * 180.02562 * 4 3 2 32 32 H 0.96994 * 119.99633 * 0.02562 * 12 10 9 33 33 H 1.08999 * 112.94828 * 25.33317 * 13 12 10 34 34 H 1.08996 * 113.77054 * 336.35595 * 14 13 12 35 35 H 1.09001 * 113.76872 * 107.74475 * 14 13 12 36 36 H 0.96998 * 120.00373 * 179.97438 * 19 18 16 37 37 H 1.09004 * 113.76750 * 221.15368 * 24 15 14 38 38 H 1.09002 * 113.76747 * 89.75151 * 24 15 14 39 39 H 1.08001 * 120.24369 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2061 0.0000 4 6 3.5626 1.2336 0.0005 5 6 4.2779 0.0404 0.0005 6 7 5.6089 -0.2862 0.0014 7 1 6.3315 0.3608 0.0019 8 7 5.7758 -1.5591 0.0015 9 6 4.6300 -2.2058 0.0013 10 6 4.4405 -3.6674 0.0067 11 8 3.3179 -4.1351 0.0115 12 7 5.5114 -4.4858 0.0063 13 6 5.3230 -5.9386 0.0111 14 6 5.6383 -6.6000 1.3651 15 7 6.3053 -7.6577 0.5770 16 6 6.5975 -8.9774 0.7967 17 1 7.1063 -9.5517 0.0366 18 6 6.2397 -9.5770 1.9964 19 7 5.6193 -8.8773 2.9226 20 14 6.6389 -11.3771 2.2965 21 1 7.9789 -11.4886 2.9266 22 1 5.6171 -11.9670 3.1982 23 1 6.6378 -12.1065 1.0029 24 6 6.5276 -6.7216 -0.5421 25 6 3.5771 -1.1816 0.0005 26 6 2.1852 -1.1871 -0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 1.6445 2.1346 -0.0004 31 1 4.0854 2.1786 0.0009 32 1 6.4067 -4.1128 0.0027 33 1 4.3676 -6.2447 -0.4148 34 1 6.3195 -6.0211 1.9887 35 1 4.7544 -6.9426 1.9031 36 1 5.3690 -9.2964 3.7608 37 1 6.3523 -7.1612 -1.5240 38 1 7.4706 -6.1785 -0.4799 39 1 1.6449 -2.1223 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030605809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:21 Heat of formation + Delta-G solvation = 81.321180 kcal Electronic energy + Delta-G solvation = -23044.681338 eV Core-core repulsion = 19568.315385 eV Total energy + Delta-G solvation = -3476.365953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.51317 -40.84938 -39.13124 -39.09274 -35.20469 -33.99834 -33.45998 -32.77835 -30.94992 -29.43623 -27.83771 -26.64434 -25.95015 -24.32712 -23.82226 -22.54581 -21.44201 -21.08875 -19.24170 -18.80133 -18.48781 -17.38891 -17.07126 -17.00072 -16.83790 -16.15181 -15.76873 -15.57961 -15.41954 -14.95286 -14.69613 -14.57381 -14.38537 -13.69887 -13.33584 -13.23539 -13.01108 -12.84834 -12.80493 -12.64388 -12.54780 -12.30962 -12.23028 -11.95928 -11.95209 -11.54995 -11.20347 -11.17838 -10.89353 -10.04827 -9.67668 -9.00701 -8.98353 -7.91876 -5.27941 -0.24155 0.33863 0.83701 1.45540 1.48695 1.57522 1.67942 2.07440 2.19296 2.49021 2.75455 3.17301 3.25941 3.40358 3.46359 3.75288 3.82161 3.99272 4.18440 4.27273 4.37697 4.45526 4.49665 4.60673 4.73112 4.81413 4.88779 4.91085 5.04769 5.11361 5.21448 5.21806 5.25707 5.38562 5.46702 5.63599 5.67723 5.85184 5.87859 6.10315 6.44407 6.76477 6.87213 7.13217 7.57364 8.50141 9.24991 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.029520 B = 0.002826 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.284295 B = 9904.100331 C =10456.019499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.082 4.082 4 C -0.103 4.103 5 C 0.051 3.949 6 N -0.390 5.390 7 H 0.465 0.535 8 N -0.200 5.200 9 C -0.028 4.028 10 C 0.601 3.399 11 O -0.569 6.569 12 N -0.690 5.690 13 C 0.119 3.881 14 C 0.153 3.847 15 N -0.637 5.637 16 C -0.235 4.235 17 H 0.092 0.908 18 C -0.071 4.071 19 N -0.956 5.956 20 Si 0.985 3.015 21 H -0.284 1.284 22 H -0.296 1.296 23 H -0.264 1.264 24 C 0.123 3.877 25 C -0.132 4.132 26 C -0.082 4.082 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.170 0.830 31 H 0.170 0.830 32 H 0.415 0.585 33 H 0.099 0.901 34 H 0.024 0.976 35 H 0.036 0.964 36 H 0.249 0.751 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.891 27.157 -8.144 28.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.102 4.102 4 C -0.123 4.123 5 C -0.062 4.062 6 N -0.114 5.114 7 H 0.315 0.685 8 N -0.032 5.032 9 C -0.197 4.197 10 C 0.387 3.613 11 O -0.446 6.446 12 N -0.341 5.341 13 C 0.013 3.987 14 C 0.026 3.974 15 N -0.364 5.364 16 C -0.364 4.364 17 H 0.110 0.890 18 C -0.263 4.263 19 N -0.604 5.604 20 Si 0.813 3.187 21 H -0.211 1.211 22 H -0.222 1.222 23 H -0.189 1.189 24 C -0.002 4.002 25 C -0.139 4.139 26 C -0.102 4.102 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.187 0.813 31 H 0.188 0.812 32 H 0.252 0.748 33 H 0.117 0.883 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.517 26.309 -7.997 27.722 hybrid contribution 0.313 -0.853 0.692 1.142 sum -3.205 25.456 -7.305 26.677 Atomic orbital electron populations 1.20840 0.89046 1.03709 1.03261 1.19952 0.97823 0.92229 1.00130 1.21091 0.93315 0.98476 0.97336 1.20252 0.93939 0.95077 1.03063 1.19431 0.84825 0.96142 1.05791 1.43058 1.06633 1.03536 1.58168 0.68513 1.72799 1.25288 0.92731 1.12378 1.22494 0.89687 0.93411 1.14117 1.17018 0.84601 0.83901 0.75820 1.90768 1.25023 1.76659 1.52117 1.45735 1.09252 1.06022 1.73066 1.23310 1.00022 0.77408 0.97941 1.22585 0.95015 0.86811 0.93000 1.46041 1.68401 1.05588 1.16396 1.19453 1.31829 0.84593 1.00478 0.89011 1.25757 1.01344 1.02938 0.96309 1.70047 1.46020 1.36982 1.07357 0.84982 0.76889 0.78963 0.77890 1.21100 1.22242 1.18887 1.23006 0.95301 0.89142 0.92740 1.19644 0.94791 0.91472 1.07990 1.20287 0.91287 0.99202 0.99467 0.90168 0.92215 0.89092 0.81253 0.81233 0.74791 0.88311 0.95854 0.94552 0.94255 0.91261 0.91783 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.99 71.24 0.71 -0.76 16 2 C -0.10 -1.83 5.85 -20.06 -0.12 -1.95 16 3 C -0.08 -1.02 9.60 22.06 0.21 -0.81 16 4 C -0.10 -1.28 10.03 22.12 0.22 -1.06 16 5 C 0.05 1.01 7.38 39.18 0.29 1.30 16 6 N -0.39 -6.86 6.85 -51.60 -0.35 -7.21 16 7 H 0.47 3.85 8.96 -220.04 -1.97 1.88 16 8 N -0.20 -5.00 11.80 -44.88 -0.53 -5.53 16 9 C -0.03 -0.87 7.32 43.86 0.32 -0.55 16 10 C 0.60 22.35 7.81 86.65 0.68 23.02 16 11 O -0.57 -25.05 16.02 -4.07 -0.07 -25.12 16 12 N -0.69 -24.03 5.37 -450.70 -2.42 -26.45 16 13 C 0.12 4.94 4.40 46.75 0.21 5.15 16 14 C 0.15 7.85 7.33 86.44 0.63 8.49 16 15 N -0.64 -33.85 3.70 -716.68 -2.65 -36.50 16 16 C -0.24 -13.52 10.70 84.03 0.90 -12.62 16 17 H 0.09 4.93 7.83 -2.91 -0.02 4.91 16 18 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 19 N -0.96 -60.18 11.39 21.65 0.25 -59.93 16 20 Si 0.99 46.80 29.55 68.60 2.03 48.83 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 24 C 0.12 4.97 8.69 86.48 0.75 5.72 16 25 C -0.13 -3.71 6.34 -20.14 -0.13 -3.83 16 26 C -0.08 -2.18 9.50 22.14 0.21 -1.97 16 27 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.06 0.91 8.08 -2.39 -0.02 0.89 16 29 H 0.09 0.74 8.08 -2.38 -0.02 0.72 16 30 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 31 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 32 H 0.42 12.26 8.45 -92.71 -0.78 11.48 16 33 H 0.10 4.43 7.51 -2.39 -0.02 4.41 16 34 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.04 2.15 7.16 -2.39 -0.02 2.13 16 36 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.06 2.28 8.11 -2.39 -0.02 2.26 16 39 H 0.11 3.48 7.65 -2.91 -0.02 3.46 16 Total: -1.00 -79.74 337.13 -0.04 -79.78 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -1.65 Total: 15.67 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 5.35 Total: 16.46 kcal Atomic # 7 Polarization: -129.91 SS G_CDS: -5.71 Total: -135.62 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.07 Total: -25.12 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -79.74 -0.04 -79.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030605809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.105 kcal (2) G-P(sol) polarization free energy of solvation -79.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds