Wall clock time and date at job start Tue Mar 31 2020 03:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 120.00022 * 2 1 4 4 O 1.21589 * 119.99903 * 185.83098 * 3 2 1 5 5 C 1.47597 * 120.00151 * 5.84249 * 3 2 1 6 6 C 1.38565 * 119.74210 * 214.81919 * 5 3 2 7 7 N 1.33777 * 122.05750 * 179.69469 * 6 5 3 8 8 H 0.97004 * 119.62730 * 180.26545 * 7 6 5 9 9 C 1.37218 * 120.73699 * 0.57393 * 7 6 5 10 10 N 1.32007 * 134.46988 * 179.71452 * 9 7 6 11 11 C 1.33411 * 110.92912 * 179.97438 * 10 9 7 12 12 C 1.35782 * 110.89548 * 0.02562 * 11 10 9 13 13 C 1.41384 * 106.44834 * 359.97438 * 12 11 10 14 14 C 1.38768 * 135.64890 * 180.02562 * 13 12 11 15 15 C 1.46504 * 119.99717 * 180.02562 * 2 1 3 16 16 C 1.53490 * 114.20764 * 59.99752 * 15 2 1 17 17 N 1.47068 * 87.98448 * 220.14727 * 16 15 2 18 18 C 1.36936 * 136.05736 * 207.08617 * 17 16 15 19 19 H 1.08002 * 120.00184 * 354.90868 * 18 17 16 20 20 C 1.38813 * 119.99840 * 174.90906 * 18 17 16 21 21 N 1.31618 * 120.00074 * 184.65038 * 20 18 17 22 22 Si 1.86803 * 120.00080 * 4.64370 * 20 18 17 23 23 H 1.48504 * 109.46973 * 174.49500 * 22 20 18 24 24 H 1.48489 * 109.47405 * 294.49786 * 22 20 18 25 25 H 1.48506 * 109.46771 * 54.50105 * 22 20 18 26 26 C 1.47066 * 87.88175 * 27.34209 * 17 16 15 27 27 H 1.09001 * 109.46797 * 274.63170 * 1 2 3 28 28 H 1.08998 * 109.46661 * 34.62932 * 1 2 3 29 29 H 1.08994 * 109.47082 * 154.62934 * 1 2 3 30 30 H 1.08000 * 118.97056 * 359.96774 * 6 5 3 31 31 H 1.08004 * 124.55008 * 179.97438 * 11 10 9 32 32 H 1.07999 * 126.77819 * 179.97438 * 12 11 10 33 33 H 1.07995 * 120.72948 * 0.02562 * 14 13 12 34 34 H 1.09007 * 113.27778 * 193.06206 * 15 2 1 35 35 H 1.09003 * 113.46763 * 105.36872 * 16 15 2 36 36 H 1.08993 * 113.46994 * 334.92666 * 16 15 2 37 37 H 0.97001 * 119.99815 * 4.99296 * 21 20 18 38 38 H 1.09004 * 113.46661 * 87.43995 * 26 17 16 39 39 H 1.09004 * 113.46641 * 217.87691 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3501 1.1699 -0.1070 5 6 1.4067 2.4421 0.1301 6 6 1.8583 3.5660 -0.5430 7 7 1.2274 4.7429 -0.4628 8 1 1.5724 5.5062 -0.9521 9 6 0.1015 4.8840 0.3086 10 7 -0.7119 5.8869 0.5830 11 6 -1.6850 5.4990 1.4091 12 6 -1.5549 4.1855 1.7277 13 6 -0.4087 3.7193 1.0438 14 6 0.2603 2.5080 0.9393 15 6 2.1975 -1.2688 -0.0006 16 6 1.9059 -2.1633 -1.2133 17 7 1.9168 -3.3161 -0.3002 18 6 2.1883 -4.6542 -0.4047 19 1 2.3973 -5.0890 -1.3710 20 6 2.1948 -5.4519 0.7313 21 7 2.5449 -6.7177 0.6447 22 14 1.7068 -4.7288 2.3832 23 1 1.6673 -5.8072 3.4034 24 1 2.7003 -3.7016 2.7868 25 1 0.3647 -4.1028 2.2724 26 6 1.5015 -2.4005 0.7731 27 1 -0.3633 0.0830 1.0243 28 1 -0.3632 0.8456 -0.5840 29 1 -0.3633 -0.9285 -0.4403 30 1 2.7449 3.4883 -1.1548 31 1 -2.4702 6.1435 1.7760 32 1 -2.1997 3.6104 2.3756 33 1 -0.0928 1.6352 1.4682 34 1 3.2576 -1.1543 0.2258 35 1 2.7144 -2.1808 -1.9442 36 1 0.9319 -1.9772 -1.6658 37 1 2.8676 -7.0751 -0.1974 38 1 0.4208 -2.2769 0.8443 39 1 1.9654 -2.6201 1.7348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042998173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:29 Heat of formation + Delta-G solvation = 139.592735 kcal Electronic energy + Delta-G solvation = -23695.339280 eV Core-core repulsion = 20221.500171 eV Total energy + Delta-G solvation = -3473.839109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.83095 -40.24819 -38.63599 -37.85109 -35.28954 -33.86447 -32.27754 -30.01891 -29.12169 -28.12728 -27.08454 -25.48911 -24.58053 -24.17554 -22.41224 -21.44514 -19.93518 -18.99550 -18.38667 -17.58635 -17.55622 -16.89355 -16.52476 -16.36608 -15.66165 -15.37636 -15.14935 -14.90093 -14.18384 -13.82651 -13.50036 -13.22402 -13.05943 -12.75566 -12.67270 -12.47718 -12.24576 -12.05697 -11.89518 -11.65481 -11.41023 -10.98052 -10.65517 -10.45470 -10.06550 -9.73830 -9.44095 -9.23592 -9.00197 -8.55251 -8.37780 -8.05125 -7.25617 -6.38582 -3.32779 -0.11453 0.75740 1.93761 2.58653 2.87929 3.17873 3.26707 3.33597 3.37493 3.59338 3.86088 4.11481 4.19068 4.43739 4.52290 4.69821 4.74879 4.84620 4.97186 5.02474 5.24325 5.31438 5.35740 5.48747 5.55404 5.61950 5.68484 5.71559 5.78462 6.03653 6.04519 6.14430 6.21966 6.27363 6.32016 6.54618 6.80523 6.85217 6.97751 7.34051 7.79805 8.02839 8.15794 8.89018 9.40473 10.23590 11.12812 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.028868 B = 0.003400 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.684930 B = 8234.029333 C = 8794.394174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.592 5.592 3 C 0.573 3.427 4 O -0.537 6.537 5 C -0.229 4.229 6 C 0.202 3.798 7 N -0.490 5.490 8 H 0.428 0.572 9 C 0.243 3.757 10 N -0.532 5.532 11 C 0.052 3.948 12 C -0.223 4.223 13 C -0.169 4.169 14 C 0.055 3.945 15 C 0.103 3.897 16 C 0.112 3.888 17 N -0.619 5.619 18 C -0.304 4.304 19 H 0.085 0.915 20 C -0.022 4.022 21 N -0.931 5.931 22 Si 1.072 2.928 23 H -0.294 1.294 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.081 3.919 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.189 0.811 31 H 0.159 0.841 32 H 0.140 0.860 33 H 0.152 0.848 34 H 0.127 0.873 35 H 0.052 0.948 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.048 0.952 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.920 23.442 -1.504 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.324 5.324 3 C 0.361 3.639 4 O -0.415 6.415 5 C -0.239 4.239 6 C 0.058 3.942 7 N -0.083 5.083 8 H 0.266 0.734 9 C -0.006 4.006 10 N -0.252 5.252 11 C -0.091 4.091 12 C -0.245 4.245 13 C -0.177 4.177 14 C 0.031 3.969 15 C -0.001 4.001 16 C -0.015 4.015 17 N -0.348 5.348 18 C -0.430 4.430 19 H 0.103 0.897 20 C -0.221 4.221 21 N -0.573 5.573 22 Si 0.905 3.095 23 H -0.221 1.221 24 H -0.218 1.218 25 H -0.216 1.216 26 C -0.045 4.045 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.206 0.794 31 H 0.177 0.823 32 H 0.158 0.842 33 H 0.169 0.831 34 H 0.145 0.855 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.536 23.793 -0.308 24.431 hybrid contribution 0.009 -0.124 -1.537 1.542 sum -5.527 23.669 -1.845 24.376 Atomic orbital electron populations 1.22149 0.79724 1.03969 1.01687 1.47765 1.06954 1.05770 1.71892 1.17700 0.86680 0.82773 0.76768 1.90812 1.13412 1.87079 1.50202 1.19285 1.01368 0.94752 1.08498 1.22144 0.94502 0.82749 0.94833 1.40288 1.20091 1.11862 1.36055 0.73419 1.20492 0.90138 0.94013 0.95960 1.69531 1.06209 1.29175 1.20255 1.22342 0.96543 0.94186 0.96042 1.21424 0.99426 0.96881 1.06761 1.20112 1.00184 0.92973 1.04417 1.21910 0.88628 0.97073 0.89283 1.23654 0.97784 0.79202 0.99434 1.22749 0.98828 0.86125 0.93847 1.45785 1.79172 1.03927 1.05867 1.20141 1.46358 0.80230 0.96320 0.89739 1.25730 0.99721 0.94987 1.01687 1.70916 1.45121 1.12563 1.28651 0.83697 0.76013 0.73723 0.76077 1.22082 1.21839 1.21634 1.23304 0.97713 0.88362 0.95147 0.92031 0.91016 0.89622 0.79377 0.82331 0.84234 0.83054 0.85478 0.93020 0.94244 0.92788 0.93475 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 7.65 59.85 0.46 1.14 16 2 N -0.59 -7.81 3.12 -174.77 -0.54 -8.36 16 3 C 0.57 7.35 7.34 -12.44 -0.09 7.26 16 4 O -0.54 -8.57 16.29 5.29 0.09 -8.48 16 5 C -0.23 -2.22 5.16 -105.11 -0.54 -2.76 16 6 C 0.20 1.41 10.67 -16.58 -0.18 1.24 16 7 N -0.49 -3.40 5.27 -10.38 -0.05 -3.45 16 8 H 0.43 1.57 8.91 -40.82 -0.36 1.21 16 9 C 0.24 2.65 8.64 -153.91 -1.33 1.32 16 10 N -0.53 -6.71 11.17 -11.09 -0.12 -6.84 16 11 C 0.05 0.59 11.69 -17.75 -0.21 0.38 16 12 C -0.22 -2.39 10.99 -39.26 -0.43 -2.82 16 13 C -0.17 -1.85 6.41 -105.01 -0.67 -2.52 16 14 C 0.05 0.52 7.90 -38.54 -0.30 0.22 16 15 C 0.10 1.75 4.55 -67.68 -0.31 1.45 16 16 C 0.11 2.11 8.23 -8.52 -0.07 2.04 16 17 N -0.62 -14.67 3.69 -184.65 -0.68 -15.35 16 18 C -0.30 -8.57 11.09 -15.06 -0.17 -8.74 16 19 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 20 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 21 N -0.93 -28.91 13.70 55.49 0.76 -28.15 16 22 Si 1.07 26.09 25.13 -169.99 -4.27 21.82 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -6.66 6.27 56.52 0.35 -6.31 16 25 H -0.29 -6.48 6.73 56.52 0.38 -6.10 16 26 C 0.08 1.60 5.34 -8.39 -0.04 1.56 16 27 H 0.06 0.52 6.36 -51.93 -0.33 0.19 16 28 H 0.07 0.59 6.49 -51.93 -0.34 0.25 16 29 H 0.09 0.93 5.99 -51.93 -0.31 0.62 16 30 H 0.19 0.81 7.91 -52.49 -0.42 0.40 16 31 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.15 1.24 5.24 -52.49 -0.28 0.97 16 34 H 0.13 2.35 7.34 -51.93 -0.38 1.97 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.04 0.68 7.03 -51.93 -0.37 0.32 16 37 H 0.26 8.03 8.73 -40.82 -0.36 7.68 16 38 H 0.05 0.86 6.40 -51.93 -0.33 0.53 16 39 H 0.06 1.30 4.02 -51.93 -0.21 1.09 16 LS Contribution 316.34 15.07 4.77 4.77 Total: -1.00 -36.48 316.34 -8.28 -44.76 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -4.23 Total: 0.28 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -3.98 Total: -0.99 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -0.64 Total: -62.15 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.09 Total: -8.48 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -4.27 Total: 21.82 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.48 -8.28 -44.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042998173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.352 kcal (2) G-P(sol) polarization free energy of solvation -36.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds