Wall clock time and date at job start Tue Mar 31 2020 03:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 120.00022 * 2 1 4 4 O 1.21589 * 119.99903 * 185.83098 * 3 2 1 5 5 C 1.47597 * 120.00151 * 5.84249 * 3 2 1 6 6 C 1.38565 * 119.74210 * 214.81919 * 5 3 2 7 7 N 1.33777 * 122.05750 * 179.69469 * 6 5 3 8 8 H 0.97004 * 119.62730 * 180.26545 * 7 6 5 9 9 C 1.37218 * 120.73699 * 0.57393 * 7 6 5 10 10 N 1.32007 * 134.46988 * 179.71452 * 9 7 6 11 11 C 1.33411 * 110.92912 * 179.97438 * 10 9 7 12 12 C 1.35782 * 110.89548 * 0.02562 * 11 10 9 13 13 C 1.41384 * 106.44834 * 359.97438 * 12 11 10 14 14 C 1.38768 * 135.64890 * 180.02562 * 13 12 11 15 15 C 1.46504 * 119.99717 * 180.02562 * 2 1 3 16 16 C 1.53490 * 114.20764 * 59.99752 * 15 2 1 17 17 N 1.47068 * 87.98448 * 220.14727 * 16 15 2 18 18 C 1.36936 * 136.05736 * 207.08617 * 17 16 15 19 19 H 1.08002 * 120.00184 * 354.90868 * 18 17 16 20 20 C 1.38813 * 119.99840 * 174.90906 * 18 17 16 21 21 N 1.31618 * 120.00074 * 184.65038 * 20 18 17 22 22 Si 1.86803 * 120.00080 * 4.64370 * 20 18 17 23 23 H 1.48504 * 109.46973 * 174.49500 * 22 20 18 24 24 H 1.48489 * 109.47405 * 294.49786 * 22 20 18 25 25 H 1.48506 * 109.46771 * 54.50105 * 22 20 18 26 26 C 1.47066 * 87.88175 * 27.34209 * 17 16 15 27 27 H 1.09001 * 109.46797 * 274.63170 * 1 2 3 28 28 H 1.08998 * 109.46661 * 34.62932 * 1 2 3 29 29 H 1.08994 * 109.47082 * 154.62934 * 1 2 3 30 30 H 1.08000 * 118.97056 * 359.96774 * 6 5 3 31 31 H 1.08004 * 124.55008 * 179.97438 * 11 10 9 32 32 H 1.07999 * 126.77819 * 179.97438 * 12 11 10 33 33 H 1.07995 * 120.72948 * 0.02562 * 14 13 12 34 34 H 1.09007 * 113.27778 * 193.06206 * 15 2 1 35 35 H 1.09003 * 113.46763 * 105.36872 * 16 15 2 36 36 H 1.08993 * 113.46994 * 334.92666 * 16 15 2 37 37 H 0.97001 * 119.99815 * 4.99296 * 21 20 18 38 38 H 1.09004 * 113.46661 * 87.43995 * 26 17 16 39 39 H 1.09004 * 113.46641 * 217.87691 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3501 1.1699 -0.1070 5 6 1.4067 2.4421 0.1301 6 6 1.8583 3.5660 -0.5430 7 7 1.2274 4.7429 -0.4628 8 1 1.5724 5.5062 -0.9521 9 6 0.1015 4.8840 0.3086 10 7 -0.7119 5.8869 0.5830 11 6 -1.6850 5.4990 1.4091 12 6 -1.5549 4.1855 1.7277 13 6 -0.4087 3.7193 1.0438 14 6 0.2603 2.5080 0.9393 15 6 2.1975 -1.2688 -0.0006 16 6 1.9059 -2.1633 -1.2133 17 7 1.9168 -3.3161 -0.3002 18 6 2.1883 -4.6542 -0.4047 19 1 2.3973 -5.0890 -1.3710 20 6 2.1948 -5.4519 0.7313 21 7 2.5449 -6.7177 0.6447 22 14 1.7068 -4.7288 2.3832 23 1 1.6673 -5.8072 3.4034 24 1 2.7003 -3.7016 2.7868 25 1 0.3647 -4.1028 2.2724 26 6 1.5015 -2.4005 0.7731 27 1 -0.3633 0.0830 1.0243 28 1 -0.3632 0.8456 -0.5840 29 1 -0.3633 -0.9285 -0.4403 30 1 2.7449 3.4883 -1.1548 31 1 -2.4702 6.1435 1.7760 32 1 -2.1997 3.6104 2.3756 33 1 -0.0928 1.6352 1.4682 34 1 3.2576 -1.1543 0.2258 35 1 2.7144 -2.1808 -1.9442 36 1 0.9319 -1.9772 -1.6658 37 1 2.8676 -7.0751 -0.1974 38 1 0.4208 -2.2769 0.8443 39 1 1.9654 -2.6201 1.7348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042998173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:28 Heat of formation + Delta-G solvation = 113.070076 kcal Electronic energy + Delta-G solvation = -23696.489388 eV Core-core repulsion = 20221.500171 eV Total energy + Delta-G solvation = -3474.989218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.56589 -41.38668 -39.80459 -38.77804 -36.36344 -34.94880 -34.15694 -30.84687 -29.99128 -29.63728 -28.09228 -27.05065 -25.59322 -25.05916 -23.68183 -22.37354 -21.29443 -20.15438 -19.61063 -19.12510 -18.34104 -17.78464 -17.51585 -17.35319 -16.99971 -16.41773 -16.13716 -15.86280 -15.54549 -15.21747 -15.07415 -14.24247 -13.91342 -13.76392 -13.59500 -13.52789 -13.38684 -13.30479 -13.20298 -13.13073 -12.61873 -12.31963 -12.20922 -11.75824 -11.37293 -11.15086 -11.09364 -10.98942 -10.52397 -9.67171 -9.22282 -9.18073 -8.81083 -8.65154 -5.50310 -0.77556 0.02870 1.29249 1.39021 1.49482 1.65647 1.70005 1.86240 2.40156 2.49531 2.54964 3.00154 3.18964 3.22344 3.36343 3.52941 3.58248 3.73377 4.04896 4.11190 4.17219 4.25585 4.31666 4.51933 4.53532 4.58631 4.63716 4.72102 4.80959 4.93553 4.99163 5.02971 5.04785 5.15060 5.30651 5.52779 5.65069 5.84800 5.93141 6.13923 6.32248 6.67587 7.02061 7.05358 7.29606 8.21546 8.88892 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.028868 B = 0.003400 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.684930 B = 8234.029333 C = 8794.394174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.592 5.592 3 C 0.580 3.420 4 O -0.571 6.571 5 C -0.245 4.245 6 C 0.234 3.766 7 N -0.473 5.473 8 H 0.444 0.556 9 C 0.223 3.777 10 N -0.560 5.560 11 C 0.024 3.976 12 C -0.224 4.224 13 C -0.195 4.195 14 C 0.072 3.928 15 C 0.129 3.871 16 C 0.113 3.887 17 N -0.654 5.654 18 C -0.290 4.290 19 H 0.051 0.949 20 C -0.083 4.083 21 N -0.970 5.970 22 Si 1.109 2.891 23 H -0.306 1.306 24 H -0.271 1.271 25 H -0.255 1.255 26 C 0.079 3.921 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.222 0.778 31 H 0.173 0.827 32 H 0.156 0.844 33 H 0.166 0.834 34 H 0.111 0.889 35 H 0.044 0.956 36 H 0.066 0.934 37 H 0.247 0.753 38 H 0.076 0.924 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 26.161 -1.117 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.322 5.322 3 C 0.369 3.631 4 O -0.452 6.452 5 C -0.255 4.255 6 C 0.087 3.913 7 N -0.067 5.067 8 H 0.286 0.714 9 C -0.025 4.025 10 N -0.280 5.280 11 C -0.119 4.119 12 C -0.246 4.246 13 C -0.203 4.203 14 C 0.049 3.951 15 C 0.024 3.976 16 C -0.013 4.013 17 N -0.383 5.383 18 C -0.418 4.418 19 H 0.069 0.931 20 C -0.275 4.275 21 N -0.615 5.615 22 Si 0.935 3.065 23 H -0.234 1.234 24 H -0.198 1.198 25 H -0.179 1.179 26 C -0.046 4.046 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.238 0.762 31 H 0.190 0.810 32 H 0.174 0.826 33 H 0.183 0.817 34 H 0.129 0.871 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.616 26.622 0.040 27.432 hybrid contribution 0.392 -0.888 -1.822 2.065 sum -6.224 25.734 -1.782 26.536 Atomic orbital electron populations 1.22417 0.77443 1.04722 1.03575 1.47660 1.08164 1.04433 1.71984 1.17969 0.86236 0.83306 0.75544 1.90808 1.15042 1.87565 1.51741 1.18984 1.01911 0.94060 1.10499 1.22577 0.94068 0.81760 0.92874 1.40327 1.18839 1.12496 1.35025 0.71413 1.20687 0.91093 0.93887 0.96861 1.69465 1.07112 1.30310 1.21133 1.22670 0.97259 0.95070 0.96868 1.21697 0.99542 0.96824 1.06519 1.20229 1.00941 0.93535 1.05577 1.21990 0.87821 0.96999 0.88321 1.22886 0.97060 0.80523 0.97130 1.22934 0.99792 0.84552 0.94069 1.45777 1.80094 1.03305 1.09130 1.19971 1.44243 0.82719 0.94822 0.93094 1.27100 1.00193 0.94786 1.05433 1.71022 1.48196 1.14315 1.27948 0.83291 0.77957 0.73459 0.71769 1.23414 1.19773 1.17938 1.23498 0.99317 0.87947 0.93885 0.89825 0.88817 0.90147 0.76210 0.80985 0.82632 0.81662 0.87090 0.93742 0.91653 0.94435 0.90654 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.93 7.65 127.77 0.98 1.91 16 2 N -0.59 -13.46 3.12 -825.10 -2.57 -16.03 16 3 C 0.58 12.89 7.34 86.71 0.64 13.53 16 4 O -0.57 -16.74 16.29 -4.00 -0.07 -16.81 16 5 C -0.25 -3.79 5.16 -20.18 -0.10 -3.90 16 6 C 0.23 2.32 10.67 84.47 0.90 3.22 16 7 N -0.47 -4.98 5.27 -186.74 -0.98 -5.96 16 8 H 0.44 1.77 8.91 -92.71 -0.83 0.95 16 9 C 0.22 4.36 8.64 135.83 1.17 5.53 16 10 N -0.56 -13.42 11.17 -188.99 -2.11 -15.53 16 11 C 0.02 0.51 11.69 83.88 0.98 1.49 16 12 C -0.22 -4.36 10.99 22.47 0.25 -4.12 16 13 C -0.19 -3.74 6.41 -20.12 -0.13 -3.87 16 14 C 0.07 1.10 7.90 22.94 0.18 1.29 16 15 C 0.13 4.08 4.55 45.55 0.21 4.28 16 16 C 0.11 4.03 8.23 83.17 0.68 4.71 16 17 N -0.65 -30.26 3.69 -738.12 -2.73 -32.98 16 18 C -0.29 -16.60 11.09 84.03 0.93 -15.67 16 19 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 20 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 21 N -0.97 -62.27 13.70 21.65 0.30 -61.97 16 22 Si 1.11 51.79 25.13 68.60 1.72 53.52 16 23 H -0.31 -14.80 7.11 99.48 0.71 -14.09 16 24 H -0.27 -11.65 6.27 99.48 0.62 -11.03 16 25 H -0.25 -10.31 6.73 99.48 0.67 -9.65 16 26 C 0.08 2.88 5.34 83.26 0.44 3.33 16 27 H 0.08 0.98 6.36 -2.39 -0.02 0.96 16 28 H 0.09 1.09 6.49 -2.39 -0.02 1.08 16 29 H 0.08 1.39 5.99 -2.39 -0.01 1.37 16 30 H 0.22 0.82 7.91 -2.91 -0.02 0.80 16 31 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 32 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 33 H 0.17 1.98 5.24 -2.91 -0.02 1.96 16 34 H 0.11 3.93 7.34 -2.38 -0.02 3.92 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 36 H 0.07 2.04 7.03 -2.39 -0.02 2.02 16 37 H 0.25 15.92 8.73 -92.71 -0.81 15.11 16 38 H 0.08 2.39 6.40 -2.38 -0.02 2.38 16 39 H 0.05 2.04 4.02 -2.39 -0.01 2.04 16 Total: -1.00 -82.08 316.34 1.30 -80.79 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.13 Total: 7.70 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 7.60 Total: 7.28 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -8.09 Total: -132.48 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.07 Total: -16.81 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 1.72 Total: 53.52 kcal Total: -82.08 1.30 -80.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042998173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.857 kcal (2) G-P(sol) polarization free energy of solvation -82.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds