Wall clock time and date at job start Tue Mar 31 2020 03:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 119.99999 * 2 1 4 4 O 1.21632 * 120.00213 * 175.70769 * 3 2 1 5 5 C 1.47305 * 120.00160 * 355.70560 * 3 2 1 6 6 C 1.46617 * 120.61579 * 40.04163 * 5 3 2 7 7 C 1.34225 * 119.81627 * 180.02562 * 6 5 3 8 8 N 1.37390 * 120.95303 * 0.02562 * 7 6 5 9 9 C 1.34898 * 132.31335 * 180.02562 * 8 7 6 10 10 N 1.30993 * 109.50714 * 179.97438 * 9 8 7 11 11 C 1.33122 * 109.93185 * 0.02562 * 10 9 8 12 12 C 1.38192 * 120.82946 * 359.97438 * 8 7 6 13 13 C 1.38585 * 120.61929 * 219.76406 * 5 3 2 14 14 C 1.46493 * 119.99788 * 179.97438 * 2 1 3 15 15 C 1.53505 * 114.20740 * 60.00309 * 14 2 1 16 16 N 1.47064 * 87.98279 * 220.14521 * 15 14 2 17 17 C 1.36940 * 136.05443 * 207.08000 * 16 15 14 18 18 H 1.08005 * 119.99917 * 7.10297 * 17 16 15 19 19 C 1.38805 * 120.00326 * 187.10212 * 17 16 15 20 20 N 1.31614 * 120.00366 * 194.70286 * 19 17 16 21 21 Si 1.86801 * 119.99747 * 14.70347 * 19 17 16 22 22 H 1.48498 * 109.47422 * 270.00095 * 21 19 17 23 23 H 1.48499 * 109.47120 * 30.00185 * 21 19 17 24 24 H 1.48502 * 109.47469 * 149.99828 * 21 19 17 25 25 C 1.47064 * 87.88701 * 27.34024 * 16 15 14 26 26 H 1.09002 * 109.47035 * 274.96411 * 1 2 3 27 27 H 1.09006 * 109.47430 * 34.96111 * 1 2 3 28 28 H 1.09001 * 109.47310 * 154.96708 * 1 2 3 29 29 H 1.08003 * 120.08991 * 0.02562 * 6 5 3 30 30 H 1.07997 * 119.52704 * 179.97438 * 7 6 5 31 31 H 1.07999 * 125.24501 * 359.97438 * 9 8 7 32 32 H 1.07996 * 126.31314 * 179.97438 * 11 10 9 33 33 H 1.08004 * 120.48668 * 0.02562 * 13 5 3 34 34 H 1.09004 * 113.28265 * 193.06707 * 14 2 1 35 35 H 1.08996 * 113.46642 * 105.36324 * 15 14 2 36 36 H 1.09004 * 113.45991 * 334.92387 * 15 14 2 37 37 H 0.96998 * 119.99991 * 354.94396 * 20 19 17 38 38 H 1.08999 * 113.46624 * 87.44095 * 25 16 15 39 39 H 1.08993 * 113.46696 * 217.87327 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3526 1.1687 0.0788 5 6 1.4055 2.4411 -0.0955 6 6 0.1457 2.6336 0.6294 7 6 -0.5096 3.8008 0.5304 8 7 -0.0176 4.8241 -0.2432 9 6 -0.4743 6.0665 -0.5031 10 7 0.3563 6.6778 -1.3107 11 6 1.3745 5.8735 -1.6084 12 6 1.1666 4.6784 -0.9404 13 6 1.8964 3.4820 -0.8677 14 6 2.1974 -1.2687 0.0006 15 6 1.9059 -2.1643 -1.2116 16 7 1.9168 -3.3163 -0.2974 17 6 2.1883 -4.6545 -0.4009 18 1 2.5875 -5.0550 -1.3211 19 6 1.9505 -5.4963 0.6768 20 7 2.4680 -6.7064 0.6935 21 14 0.8960 -4.9118 2.1036 22 1 1.7582 -4.2598 3.1219 23 1 -0.1096 -3.9373 1.6093 24 1 0.2010 -6.0735 2.7141 25 6 1.5015 -2.3999 0.7751 26 1 -0.3633 0.0889 1.0238 27 1 -0.3634 0.8422 -0.5889 28 1 -0.3634 -0.9311 -0.4348 29 1 -0.2539 1.8384 1.2412 30 1 -1.4374 3.9374 1.0661 31 1 -1.3844 6.4916 -0.1064 32 1 2.2090 6.1097 -2.2519 33 1 2.8238 3.3718 -1.4101 34 1 3.2575 -1.1541 0.2269 35 1 2.7144 -2.1824 -1.9423 36 1 0.9319 -1.9785 -1.6642 37 1 2.9538 -7.0368 -0.0783 38 1 0.4208 -2.2763 0.8462 39 1 1.9653 -2.6187 1.7369 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043230819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:11 Heat of formation + Delta-G solvation = 139.858735 kcal Electronic energy + Delta-G solvation = -23615.267928 eV Core-core repulsion = 20141.440354 eV Total energy + Delta-G solvation = -3473.827574 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.05660 -40.32102 -38.36898 -37.08665 -34.87775 -33.61009 -32.35123 -31.19327 -28.83856 -28.07051 -26.98741 -25.40539 -24.87208 -23.49792 -22.46182 -22.09945 -20.15824 -19.07632 -18.30429 -17.94687 -17.47816 -16.67109 -16.35479 -16.06097 -15.48922 -15.22699 -15.13796 -14.75440 -14.42971 -13.84665 -13.77074 -13.57517 -13.35905 -12.96246 -12.55590 -12.17093 -12.11137 -12.04427 -11.85718 -11.73560 -11.30253 -10.98328 -10.69827 -10.65844 -10.30050 -9.96988 -9.73646 -9.60915 -9.31067 -8.80493 -8.47655 -7.89822 -7.28052 -6.38588 -3.31459 0.26338 0.75367 2.22272 2.44855 2.72022 2.86407 3.18690 3.34362 3.39727 3.55388 4.00100 4.13941 4.24891 4.29519 4.52322 4.56224 4.59938 4.74069 4.97466 4.99214 5.07764 5.16930 5.24277 5.31828 5.41066 5.50784 5.53993 5.67486 5.71771 5.83187 6.06119 6.06349 6.16901 6.20215 6.29353 6.35026 6.76230 6.86192 6.99642 7.37924 7.48266 8.08459 8.16872 8.89522 9.41770 10.25760 11.11737 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.037573 B = 0.003146 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.032318 B = 8897.028084 C = 9299.680584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.592 5.592 3 C 0.563 3.437 4 O -0.532 6.532 5 C -0.140 4.140 6 C -0.109 4.109 7 C 0.038 3.962 8 N -0.366 5.366 9 C 0.150 3.850 10 N -0.461 5.461 11 C 0.004 3.996 12 C -0.014 4.014 13 C -0.002 4.002 14 C 0.100 3.900 15 C 0.108 3.892 16 N -0.616 5.616 17 C -0.307 4.307 18 H 0.084 0.916 19 C -0.022 4.022 20 N -0.928 5.928 21 Si 1.063 2.937 22 H -0.292 1.292 23 H -0.282 1.282 24 H -0.294 1.294 25 C 0.094 3.906 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.162 0.838 30 H 0.170 0.830 31 H 0.212 0.788 32 H 0.185 0.815 33 H 0.156 0.844 34 H 0.127 0.873 35 H 0.051 0.949 36 H 0.038 0.962 37 H 0.263 0.737 38 H 0.050 0.950 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.313 24.148 -0.812 25.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.324 5.324 3 C 0.351 3.649 4 O -0.409 6.409 5 C -0.145 4.145 6 C -0.130 4.130 7 C -0.080 4.080 8 N -0.037 5.037 9 C -0.126 4.126 10 N -0.174 5.174 11 C -0.152 4.152 12 C -0.123 4.123 13 C -0.023 4.023 14 C -0.004 4.004 15 C -0.020 4.020 16 N -0.344 5.344 17 C -0.433 4.433 18 H 0.102 0.898 19 C -0.222 4.222 20 N -0.570 5.570 21 Si 0.894 3.106 22 H -0.220 1.220 23 H -0.209 1.209 24 H -0.221 1.221 25 C -0.033 4.033 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.179 0.821 30 H 0.187 0.813 31 H 0.228 0.772 32 H 0.202 0.798 33 H 0.174 0.826 34 H 0.145 0.855 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.435 24.238 0.470 26.014 hybrid contribution 0.314 -0.502 -1.202 1.340 sum -9.121 23.736 -0.732 25.439 Atomic orbital electron populations 1.22134 0.79872 1.03858 1.01507 1.47787 1.06933 1.05833 1.71834 1.17930 0.86945 0.83109 0.76887 1.90831 1.13328 1.87147 1.49636 1.20990 0.96317 0.95268 1.01975 1.22212 0.93853 0.96902 1.00049 1.21488 1.01220 0.87261 0.98044 1.42949 1.17564 1.12216 1.31012 1.24957 1.02978 0.81354 1.03269 1.69983 1.03313 1.31245 1.12879 1.22775 0.99935 0.88602 1.03921 1.19572 0.90628 0.98646 1.03424 1.20862 0.97901 0.88098 0.95446 1.23661 0.97945 0.79339 0.99427 1.22785 0.98736 0.86639 0.93829 1.45880 1.79591 1.03865 1.05054 1.20112 1.40620 0.79626 1.02908 0.89801 1.25798 1.00698 0.94777 1.00886 1.70891 1.36803 1.18327 1.30954 0.83775 0.76648 0.74635 0.75516 1.21989 1.20892 1.22140 1.23120 0.97607 0.87991 0.94583 0.92179 0.90933 0.89864 0.82097 0.81267 0.77161 0.79837 0.82601 0.85481 0.93114 0.94462 0.92695 0.93250 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 7.71 59.85 0.46 1.16 16 2 N -0.59 -8.27 3.11 -174.86 -0.54 -8.82 16 3 C 0.56 8.07 7.36 -12.57 -0.09 7.98 16 4 O -0.53 -9.59 16.44 5.25 0.09 -9.50 16 5 C -0.14 -1.54 5.31 -102.70 -0.55 -2.08 16 6 C -0.11 -0.86 7.76 -37.62 -0.29 -1.15 16 7 C 0.04 0.25 10.92 -16.47 -0.18 0.07 16 8 N -0.37 -3.18 2.94 -62.50 -0.18 -3.36 16 9 C 0.15 1.23 12.70 -90.09 -1.14 0.08 16 10 N -0.46 -4.89 11.18 -13.90 -0.16 -5.05 16 11 C 0.00 0.04 12.03 -16.90 -0.20 -0.16 16 12 C -0.01 -0.14 6.77 -84.12 -0.57 -0.71 16 13 C 0.00 -0.02 9.76 -38.67 -0.38 -0.40 16 14 C 0.10 1.77 4.59 -67.68 -0.31 1.46 16 15 C 0.11 2.08 8.23 -8.50 -0.07 2.01 16 16 N -0.62 -14.78 3.63 -184.62 -0.67 -15.45 16 17 C -0.31 -8.69 11.04 -15.06 -0.17 -8.86 16 18 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 19 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 20 N -0.93 -28.92 13.70 55.49 0.76 -28.16 16 21 Si 1.06 25.78 25.48 -169.99 -4.33 21.45 16 22 H -0.29 -6.86 6.97 56.52 0.39 -6.47 16 23 H -0.28 -6.16 5.60 56.52 0.32 -5.85 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 C 0.09 1.88 5.01 -8.37 -0.04 1.84 16 26 H 0.06 0.48 6.82 -51.93 -0.35 0.13 16 27 H 0.07 0.59 5.92 -51.93 -0.31 0.28 16 28 H 0.08 0.93 5.98 -51.93 -0.31 0.62 16 29 H 0.16 0.95 5.54 -52.48 -0.29 0.66 16 30 H 0.17 0.46 8.06 -52.49 -0.42 0.03 16 31 H 0.21 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 34 H 0.13 2.45 7.26 -51.93 -0.38 2.07 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.04 0.67 7.04 -51.93 -0.37 0.30 16 37 H 0.26 8.09 8.73 -40.82 -0.36 7.74 16 38 H 0.05 0.92 5.35 -51.93 -0.28 0.64 16 39 H 0.06 1.20 6.13 -51.93 -0.32 0.88 16 LS Contribution 318.07 15.07 4.79 4.79 Total: -1.00 -36.03 318.07 -8.26 -44.28 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.38 Total: -0.68 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -3.63 Total: 0.49 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -0.79 Total: -60.84 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -4.33 Total: 21.45 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.03 -8.26 -44.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043230819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.142 kcal (2) G-P(sol) polarization free energy of solvation -36.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds