Wall clock time and date at job start Tue Mar 31 2020 03:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34780 * 119.99682 * 2 1 4 4 O 1.21654 * 119.99621 * 178.54848 * 3 2 1 5 5 C 1.47047 * 120.00370 * 358.55010 * 3 2 1 6 6 C 1.37605 * 119.92961 * 27.65355 * 5 3 2 7 7 C 1.39939 * 120.01284 * 179.97438 * 6 5 3 8 8 C 1.36216 * 119.92083 * 359.97438 * 7 6 5 9 9 C 1.40918 * 119.79872 * 0.02562 * 8 7 6 10 10 N 1.32573 * 132.18623 * 179.97438 * 9 8 7 11 11 C 1.33240 * 109.14074 * 180.02562 * 10 9 8 12 12 C 1.35460 * 108.57530 * 0.02562 * 11 10 9 13 13 N 1.36257 * 107.17891 * 359.76233 * 12 11 10 14 14 C 1.46494 * 120.00239 * 180.02562 * 2 1 3 15 15 C 1.53496 * 114.20870 * 59.99608 * 14 2 1 16 16 N 1.47068 * 87.98653 * 220.15319 * 15 14 2 17 17 C 1.36939 * 136.05444 * 207.09099 * 16 15 14 18 18 H 1.08005 * 120.00306 * 6.79009 * 17 16 15 19 19 C 1.38809 * 119.99810 * 186.79539 * 17 16 15 20 20 N 1.31618 * 120.00209 * 6.54577 * 19 17 16 21 21 Si 1.86801 * 120.00175 * 186.54090 * 19 17 16 22 22 H 1.48493 * 109.47302 * 265.01797 * 21 19 17 23 23 H 1.48504 * 109.46974 * 25.01465 * 21 19 17 24 24 H 1.48498 * 109.47272 * 145.01188 * 21 19 17 25 25 C 1.47058 * 87.88582 * 27.34179 * 16 15 14 26 26 H 1.08999 * 109.47041 * 265.06798 * 1 2 3 27 27 H 1.08997 * 109.47194 * 25.06753 * 1 2 3 28 28 H 1.09005 * 109.46722 * 145.06923 * 1 2 3 29 29 H 1.07993 * 119.99217 * 0.02562 * 6 5 3 30 30 H 1.07998 * 120.03696 * 179.97438 * 7 6 5 31 31 H 1.08001 * 120.10051 * 180.02562 * 8 7 6 32 32 H 1.07991 * 125.71648 * 180.02562 * 11 10 9 33 33 H 1.07996 * 126.41264 * 179.97438 * 12 11 10 34 34 H 1.09000 * 113.28430 * 193.06723 * 14 2 1 35 35 H 1.09003 * 113.46886 * 105.37131 * 15 14 2 36 36 H 1.08997 * 113.46831 * 334.93057 * 15 14 2 37 37 H 0.97000 * 120.00283 * 180.02562 * 20 19 17 38 38 H 1.09000 * 113.47089 * 87.44410 * 25 16 15 39 39 H 1.09002 * 113.47098 * 217.88135 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3551 1.1674 0.0267 5 6 1.4040 2.4405 -0.0322 6 6 0.1341 2.5138 0.4927 7 6 -0.5666 3.7248 0.4634 8 6 0.0101 4.8304 -0.0847 9 6 1.3109 4.7490 -0.6206 10 7 2.0925 5.6488 -1.2011 11 6 3.2453 5.0728 -1.5394 12 6 3.2027 3.7709 -1.1675 13 7 1.9901 3.5588 -0.5834 14 6 2.1976 -1.2686 -0.0006 15 6 1.9060 -2.1632 -1.2133 16 7 1.9169 -3.3160 -0.3002 17 6 2.1885 -4.6541 -0.4047 18 1 2.5831 -5.0547 -1.3269 19 6 1.9566 -5.4958 0.6745 20 7 1.3571 -5.0347 1.7517 21 14 2.4952 -7.2828 0.5979 22 1 1.3563 -8.1243 0.1508 23 1 3.6193 -7.4203 -0.3626 24 1 2.9382 -7.7245 1.9447 25 6 1.5016 -2.4006 0.7731 26 1 -0.3633 -0.0884 1.0238 27 1 -0.3633 0.9308 -0.4354 28 1 -0.3633 -0.8426 -0.5885 29 1 -0.3215 1.6368 0.9280 30 1 -1.5634 3.7826 0.8749 31 1 -0.5279 5.7666 -0.1084 32 1 4.0748 5.5618 -2.0283 33 1 3.9849 3.0391 -1.3049 34 1 3.2576 -1.1542 0.2259 35 1 2.7146 -2.1808 -1.9442 36 1 0.9321 -1.9772 -1.6658 37 1 1.1954 -5.6228 2.5060 38 1 0.4209 -2.2770 0.8444 39 1 1.9655 -2.6201 1.7348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043328467.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:01 Heat of formation + Delta-G solvation = 155.404678 kcal Electronic energy + Delta-G solvation = -23912.648770 eV Core-core repulsion = 20439.495319 eV Total energy + Delta-G solvation = -3473.153451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.99636 -40.25762 -38.09524 -37.31250 -34.92014 -33.71156 -32.23898 -30.58778 -29.05981 -27.74727 -27.30039 -25.01111 -24.78372 -23.34840 -22.76600 -22.13668 -20.26516 -18.96861 -17.95772 -17.58534 -16.97384 -16.53961 -16.23450 -16.12903 -15.63597 -15.24860 -14.83517 -14.26498 -14.13047 -13.96277 -13.72121 -13.28426 -13.05879 -12.68267 -12.48823 -12.16474 -12.01650 -11.71988 -11.44584 -11.36381 -11.20179 -11.06866 -10.85164 -10.39603 -10.35857 -10.21996 -9.91211 -9.60551 -8.97742 -8.91122 -8.43581 -8.00732 -7.05845 -5.93022 -3.24991 0.12616 1.08074 2.11048 2.44149 2.94895 3.01919 3.32254 3.33850 3.37949 3.39960 3.98127 4.10493 4.36040 4.37245 4.53451 4.73885 4.96265 5.11475 5.19118 5.22194 5.29926 5.35482 5.37667 5.45838 5.54834 5.62927 5.73074 5.81234 5.88239 5.90111 6.20929 6.28719 6.39522 6.47256 6.51255 6.79412 6.97552 7.09141 7.31822 7.39456 7.68753 7.81229 7.99192 8.88772 9.55144 10.45127 11.25694 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.035550 B = 0.003200 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.424677 B = 8748.033069 C = 9265.841728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.576 5.576 3 C 0.555 3.445 4 O -0.530 6.530 5 C 0.042 3.958 6 C -0.112 4.112 7 C -0.118 4.118 8 C -0.053 4.053 9 C 0.202 3.798 10 N -0.487 5.487 11 C 0.023 3.977 12 C -0.067 4.067 13 N -0.335 5.335 14 C 0.084 3.916 15 C 0.106 3.894 16 N -0.600 5.600 17 C -0.222 4.222 18 H 0.085 0.915 19 C -0.004 4.004 20 N -0.918 5.918 21 Si 0.916 3.084 22 H -0.288 1.288 23 H -0.278 1.278 24 H -0.288 1.288 25 C 0.157 3.843 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.178 0.822 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.183 0.817 33 H 0.189 0.811 34 H 0.123 0.877 35 H 0.046 0.954 36 H 0.035 0.965 37 H 0.256 0.744 38 H 0.037 0.963 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.355 17.686 -2.808 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.307 5.307 3 C 0.341 3.659 4 O -0.408 6.408 5 C -0.065 4.065 6 C -0.133 4.133 7 C -0.141 4.141 8 C -0.073 4.073 9 C -0.040 4.040 10 N -0.207 5.207 11 C -0.129 4.129 12 C -0.200 4.200 13 N -0.007 5.007 14 C -0.019 4.019 15 C -0.021 4.021 16 N -0.326 5.326 17 C -0.349 4.349 18 H 0.102 0.898 19 C -0.201 4.201 20 N -0.564 5.564 21 Si 0.746 3.254 22 H -0.215 1.215 23 H -0.204 1.204 24 H -0.214 1.214 25 C 0.030 3.970 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.195 0.805 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.200 0.800 33 H 0.206 0.794 34 H 0.141 0.859 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.817 18.055 -2.824 18.899 hybrid contribution 0.312 -1.850 0.136 1.881 sum -4.505 16.205 -2.688 17.033 Atomic orbital electron populations 1.22663 0.79834 1.04283 1.02606 1.47740 1.07122 1.05544 1.70329 1.17590 0.87086 0.82831 0.78344 1.90830 1.12815 1.86888 1.50258 1.20218 0.94656 0.87685 1.03931 1.22262 0.91581 1.00790 0.98655 1.21015 1.01242 0.91417 1.00459 1.20439 0.90193 1.00494 0.96210 1.21011 0.96048 0.81526 1.05403 1.70638 1.03551 1.29147 1.17354 1.22572 0.96729 0.91055 1.02587 1.23030 0.89447 1.00500 1.07072 1.42570 1.13325 1.08503 1.36317 1.24017 0.98049 0.79033 1.00823 1.22814 0.98394 0.87226 0.93689 1.45317 1.78753 1.03139 1.05386 1.18924 1.36508 0.80078 0.99419 0.89763 1.24856 1.00123 0.98402 0.96741 1.69835 1.45368 1.35327 1.05832 0.86048 0.78275 0.83987 0.77131 1.21467 1.20355 1.21448 1.22406 0.96360 0.83688 0.94552 0.91011 0.89508 0.89787 0.80532 0.83195 0.82894 0.79990 0.79405 0.85918 0.93603 0.94737 0.93423 0.94541 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.52 7.31 59.85 0.44 0.96 16 2 N -0.58 -8.57 3.12 -174.96 -0.55 -9.11 16 3 C 0.56 8.66 7.42 -12.69 -0.09 8.57 16 4 O -0.53 -9.93 14.78 5.23 0.08 -9.86 16 5 C 0.04 0.55 6.44 -81.86 -0.53 0.02 16 6 C -0.11 -1.04 7.45 -39.18 -0.29 -1.34 16 7 C -0.12 -0.89 10.04 -39.67 -0.40 -1.29 16 8 C -0.05 -0.50 10.09 -39.29 -0.40 -0.89 16 9 C 0.20 2.66 7.80 -156.02 -1.22 1.44 16 10 N -0.49 -6.85 11.31 -12.76 -0.14 -7.00 16 11 C 0.02 0.28 11.83 -17.93 -0.21 0.07 16 12 C -0.07 -0.92 10.85 -16.58 -0.18 -1.10 16 13 N -0.34 -4.69 2.97 -58.75 -0.17 -4.87 16 14 C 0.08 1.56 4.58 -67.68 -0.31 1.25 16 15 C 0.11 2.11 8.26 -8.51 -0.07 2.04 16 16 N -0.60 -14.82 3.76 -184.63 -0.69 -15.52 16 17 C -0.22 -6.05 10.73 -15.06 -0.16 -6.21 16 18 H 0.08 2.21 7.84 -52.48 -0.41 1.80 16 19 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 20 N -0.92 -26.26 11.82 55.49 0.66 -25.60 16 21 Si 0.92 21.49 29.56 -169.99 -5.02 16.47 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.16 3.43 6.67 -8.38 -0.06 3.37 16 26 H 0.07 0.67 7.37 -51.93 -0.38 0.28 16 27 H 0.09 0.73 4.71 -51.93 -0.24 0.49 16 28 H 0.08 0.99 6.40 -51.93 -0.33 0.65 16 29 H 0.18 1.28 4.39 -52.49 -0.23 1.05 16 30 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 31 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.18 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.19 2.53 7.09 -52.49 -0.37 2.15 16 34 H 0.12 2.48 7.28 -51.93 -0.38 2.10 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.65 6.91 -51.93 -0.36 0.29 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.04 0.77 6.68 -51.93 -0.35 0.43 16 39 H 0.07 1.64 7.59 -51.93 -0.39 1.25 16 LS Contribution 320.47 15.07 4.83 4.83 Total: -1.00 -34.10 320.47 -8.87 -42.97 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -4.28 Total: 1.00 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -3.57 Total: 6.69 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: -0.90 Total: -62.10 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.10 -8.87 -42.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043328467.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.376 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds