Wall clock time and date at job start Tue Mar 31 2020 03:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 120.00012 * 2 1 4 4 O 1.21525 * 119.99984 * 182.03868 * 3 2 1 5 5 C 1.48052 * 119.99821 * 2.04176 * 3 2 1 6 6 C 1.39766 * 119.47489 * 172.76749 * 5 3 2 7 7 C 1.38136 * 119.58080 * 180.02562 * 6 5 3 8 8 C 1.39251 * 118.37793 * 359.96402 * 7 6 5 9 9 N 1.37349 * 133.61610 * 180.02562 * 8 7 6 10 10 H 0.96998 * 125.05148 * 0.02562 * 9 8 7 11 11 C 1.36724 * 109.89792 * 179.97438 * 9 8 7 12 12 C 1.34291 * 110.02121 * 359.97438 * 11 9 8 13 13 C 1.41191 * 119.09781 * 359.97438 * 8 7 6 14 14 N 1.32450 * 119.47342 * 352.73431 * 5 3 2 15 15 C 1.46505 * 120.00224 * 180.02562 * 2 1 3 16 16 C 1.53939 * 113.74018 * 38.73506 * 15 2 1 17 17 N 1.47808 * 86.03933 * 222.08454 * 16 15 2 18 18 C 1.36939 * 134.46112 * 204.64527 * 17 16 15 19 19 H 1.08004 * 119.99737 * 179.86984 * 18 17 16 20 20 C 1.38807 * 120.00070 * 359.87040 * 18 17 16 21 21 N 1.31625 * 119.99723 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00386 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47025 * 59.99603 * 22 20 18 24 24 H 1.48497 * 109.47736 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47009 * 300.00237 * 22 20 18 26 26 C 1.47589 * 91.04876 * 24.55121 * 17 16 15 27 27 H 1.08994 * 109.47227 * 83.77117 * 1 2 3 28 28 H 1.09005 * 109.46389 * 203.76748 * 1 2 3 29 29 H 1.08994 * 109.47118 * 323.76523 * 1 2 3 30 30 H 1.08004 * 120.21215 * 0.02562 * 6 5 3 31 31 H 1.07992 * 120.81222 * 180.23701 * 7 6 5 32 32 H 1.07993 * 124.99143 * 180.02562 * 11 9 8 33 33 H 1.07994 * 126.48411 * 180.02562 * 12 11 9 34 34 H 1.08996 * 112.94538 * 170.33271 * 15 2 1 35 35 H 1.08996 * 113.77582 * 336.35146 * 16 15 2 36 36 H 1.09008 * 113.76581 * 107.75356 * 16 15 2 37 37 H 0.97002 * 119.99645 * 180.02562 * 21 20 18 38 38 H 1.08992 * 113.77190 * 221.15295 * 26 17 16 39 39 H 1.09002 * 113.76507 * 89.75135 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3536 1.1676 -0.0374 5 6 1.3993 2.4490 0.0457 6 6 2.1055 3.6454 0.1985 7 6 1.4176 4.8425 0.2419 8 6 0.0299 4.8129 0.1298 9 7 -0.9417 5.7836 0.1319 10 1 -0.7781 6.7354 0.2218 11 6 -2.1739 5.2090 -0.0128 12 6 -2.0505 3.8755 -0.1124 13 6 -0.6201 3.5689 -0.0238 14 7 0.0790 2.4436 -0.0596 15 6 2.1976 -1.2687 -0.0006 16 6 1.5556 -2.3547 -0.8828 17 7 1.8611 -3.2880 0.2219 18 6 2.0640 -4.6396 0.3072 19 1 2.2810 -5.0938 1.2627 20 6 1.9907 -5.4258 -0.8344 21 7 1.7257 -4.8723 -1.9988 22 14 2.2681 -7.2694 -0.7183 23 1 1.2586 -7.8654 0.1933 24 1 2.1356 -7.8760 -2.0672 25 1 3.6302 -7.5326 -0.1882 26 6 1.8622 -2.1785 1.1952 27 1 -0.3633 0.1115 -1.0215 28 1 -0.3632 -0.9406 0.4142 29 1 -0.3633 0.8289 0.6074 30 1 3.1822 3.6340 0.2821 31 1 1.9435 5.7788 0.3555 32 1 -3.1090 5.7483 -0.0434 33 1 -2.8534 3.1636 -0.2347 34 1 3.2669 -1.1419 -0.1691 35 1 0.4888 -2.2091 -1.0525 36 1 2.1092 -2.5604 -1.7990 37 1 1.6741 -5.4218 -2.7965 38 1 2.6600 -2.2438 1.9349 39 1 0.8856 -1.9810 1.6372 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043330206.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:42 Heat of formation + Delta-G solvation = 122.657804 kcal Electronic energy + Delta-G solvation = -23583.820524 eV Core-core repulsion = 20109.247062 eV Total energy + Delta-G solvation = -3474.573462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.81609 -39.82528 -38.04826 -37.06838 -34.42305 -32.97839 -31.89168 -30.32350 -29.66748 -27.56907 -26.44210 -24.81660 -24.71187 -23.37423 -22.44438 -21.19940 -20.08867 -18.60602 -18.44976 -17.04437 -16.99499 -16.69195 -15.87477 -15.53031 -14.94534 -14.88356 -14.61079 -14.15949 -13.77438 -13.71538 -13.40836 -13.05551 -12.98509 -12.88106 -12.42239 -12.23243 -11.69799 -11.60058 -11.42359 -11.19656 -10.82573 -10.64538 -10.58791 -10.17631 -10.03167 -9.83616 -9.47802 -9.02775 -8.72574 -8.67091 -8.40489 -7.94053 -6.83673 -5.71980 -3.04695 0.67566 0.87504 2.32143 2.65146 2.98891 3.34180 3.44938 3.48350 3.49728 3.87513 3.96209 4.37597 4.50817 4.64941 4.68093 4.80622 5.00434 5.27225 5.31464 5.47130 5.54700 5.64729 5.65167 5.81414 5.85490 6.07722 6.12192 6.16507 6.23943 6.30125 6.45961 6.54549 6.66611 6.71541 6.97365 7.02485 7.28221 7.42884 7.58884 7.71837 7.91010 8.01763 8.53204 9.08678 9.74828 10.63012 11.45177 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.033670 B = 0.003047 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.391191 B = 9186.485283 C = 9694.903298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.576 5.576 3 C 0.565 3.435 4 O -0.545 6.545 5 C 0.080 3.920 6 C -0.096 4.096 7 C -0.095 4.095 8 C 0.061 3.939 9 N -0.591 5.591 10 H 0.418 0.582 11 C 0.063 3.937 12 C -0.181 4.181 13 C 0.082 3.918 14 N -0.406 5.406 15 C 0.087 3.913 16 C 0.158 3.842 17 N -0.607 5.607 18 C -0.222 4.222 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.109 3.891 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.152 0.848 31 H 0.137 0.863 32 H 0.179 0.821 33 H 0.158 0.842 34 H 0.116 0.884 35 H 0.034 0.966 36 H 0.076 0.924 37 H 0.255 0.745 38 H 0.047 0.953 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.056 25.326 4.331 26.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.306 5.306 3 C 0.351 3.649 4 O -0.423 6.423 5 C -0.067 4.067 6 C -0.118 4.118 7 C -0.123 4.123 8 C -0.050 4.050 9 N -0.195 5.195 10 H 0.255 0.745 11 C -0.065 4.065 12 C -0.207 4.207 13 C -0.053 4.053 14 N -0.118 5.118 15 C -0.017 4.017 16 C 0.032 3.968 17 N -0.333 5.333 18 C -0.350 4.350 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.744 3.256 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.210 1.210 26 C -0.018 4.018 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.170 0.830 31 H 0.155 0.845 32 H 0.196 0.804 33 H 0.175 0.825 34 H 0.134 0.866 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.883 24.260 4.076 25.833 hybrid contribution 0.313 0.238 0.120 0.411 sum -7.570 24.498 4.196 25.982 Atomic orbital electron populations 1.22326 0.78487 1.03004 1.02664 1.47937 1.07918 1.05497 1.69211 1.17865 0.86537 0.82912 0.77578 1.90752 1.12883 1.86848 1.51837 1.21146 0.89028 0.94424 1.02127 1.21753 1.01930 0.90635 0.97526 1.20415 0.89821 0.99176 1.02929 1.19286 0.91383 0.90457 1.03835 1.41611 1.04964 1.08537 1.64362 0.74472 1.21947 0.88435 0.93654 1.02426 1.21630 0.93108 0.94635 1.11283 1.20276 0.94576 0.87198 1.03291 1.67632 1.06732 1.27735 1.09699 1.24104 0.98085 0.79845 0.99637 1.22664 0.97026 0.83309 0.93770 1.45702 1.82010 1.02160 1.03467 1.18947 1.41457 0.80290 0.94280 0.90131 1.24800 1.02033 0.98198 0.95376 1.69817 1.54566 1.34335 0.98008 0.86169 0.78057 0.84731 0.76603 1.21199 1.21562 1.21038 1.22972 0.98117 0.87236 0.93452 0.92692 0.91748 0.88197 0.82995 0.84511 0.80403 0.82452 0.86598 0.94813 0.90533 0.93546 0.93494 0.94533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 8.00 59.85 0.48 1.75 16 2 N -0.58 -10.75 3.09 -176.79 -0.55 -11.30 16 3 C 0.56 10.37 7.65 -12.23 -0.09 10.27 16 4 O -0.55 -11.29 15.79 5.34 0.08 -11.20 16 5 C 0.08 1.22 6.62 -83.00 -0.55 0.67 16 6 C -0.10 -1.19 9.60 -39.05 -0.37 -1.56 16 7 C -0.09 -0.90 10.18 -39.24 -0.40 -1.30 16 8 C 0.06 0.60 7.29 -83.90 -0.61 -0.01 16 9 N -0.59 -3.62 6.05 -10.58 -0.06 -3.68 16 10 H 0.42 1.14 8.96 -40.82 -0.37 0.77 16 11 C 0.06 0.36 11.81 -16.76 -0.20 0.16 16 12 C -0.18 -1.60 11.08 -37.62 -0.42 -2.01 16 13 C 0.08 0.99 7.52 -83.09 -0.62 0.36 16 14 N -0.41 -5.84 6.06 -6.43 -0.04 -5.88 16 15 C 0.09 1.86 4.40 -70.15 -0.31 1.55 16 16 C 0.16 3.92 6.93 -2.84 -0.02 3.90 16 17 N -0.61 -16.23 3.70 -177.89 -0.66 -16.89 16 18 C -0.22 -6.41 10.70 -15.06 -0.16 -6.57 16 19 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 21 N -0.92 -27.90 11.39 55.49 0.63 -27.26 16 22 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.11 2.41 8.43 -2.96 -0.02 2.39 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.08 6.12 -51.93 -0.32 0.77 16 29 H 0.10 1.51 5.26 -52.19 -0.27 1.24 16 30 H 0.15 1.76 7.63 -52.48 -0.40 1.36 16 31 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.18 0.30 8.06 -52.49 -0.42 -0.13 16 33 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.12 2.65 7.21 -51.93 -0.37 2.28 16 35 H 0.03 0.83 6.69 -51.93 -0.35 0.49 16 36 H 0.08 2.11 7.17 -51.92 -0.37 1.74 16 37 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.04 0.77 6.94 -51.93 -0.36 0.41 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -35.62 325.25 -8.59 -44.21 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -4.47 Total: 0.26 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: -3.40 Total: 9.28 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -0.68 Total: -65.01 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.62 -8.59 -44.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043330206.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.867 kcal (2) G-P(sol) polarization free energy of solvation -35.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds