Wall clock time and date at job start Tue Mar 31 2020 03:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34772 * 119.99759 * 2 1 4 4 O 1.21794 * 119.99899 * 186.71246 * 3 2 1 5 5 C 1.41697 * 120.00241 * 6.70482 * 3 2 1 6 6 C 1.39190 * 125.87467 * 8.57987 * 5 3 2 7 7 C 1.38091 * 107.67538 * 179.83283 * 6 5 3 8 8 C 1.39501 * 107.57130 * 0.41727 * 7 6 5 9 9 C 1.40611 * 132.41520 * 179.78011 * 8 7 6 10 10 C 1.36289 * 119.16153 * 180.02562 * 9 8 7 11 11 C 1.39969 * 120.03921 * 359.95997 * 10 9 8 12 12 N 1.30643 * 120.99295 * 0.02562 * 11 10 9 13 13 N 1.37157 * 108.20458 * 359.73843 * 8 7 6 14 14 C 1.46495 * 120.00033 * 179.97438 * 2 1 3 15 15 C 1.53498 * 114.20962 * 300.00084 * 14 2 1 16 16 N 1.47074 * 87.98401 * 87.71688 * 15 14 2 17 17 C 1.36939 * 136.05849 * 207.08421 * 16 15 14 18 18 H 1.08001 * 119.99330 * 354.94923 * 17 16 15 19 19 C 1.38810 * 119.99852 * 174.94266 * 17 16 15 20 20 N 1.31619 * 119.99666 * 184.42151 * 19 17 16 21 21 Si 1.86800 * 120.00078 * 4.42571 * 19 17 16 22 22 H 1.48499 * 109.47068 * 174.43620 * 21 19 17 23 23 H 1.48494 * 109.47002 * 294.43685 * 21 19 17 24 24 H 1.48496 * 109.47185 * 54.43813 * 21 19 17 25 25 C 1.47063 * 87.88376 * 27.34530 * 16 15 14 26 26 H 1.08997 * 109.46993 * 276.00279 * 1 2 3 27 27 H 1.08998 * 109.47081 * 36.00604 * 1 2 3 28 28 H 1.09001 * 109.46332 * 156.00304 * 1 2 3 29 29 H 1.07995 * 126.15774 * 359.96944 * 6 5 3 30 30 H 1.08002 * 126.20675 * 180.15455 * 7 6 5 31 31 H 1.08005 * 120.41939 * 359.97438 * 9 8 7 32 32 H 1.08009 * 119.97934 * 179.97438 * 10 9 8 33 33 H 1.08002 * 119.50159 * 180.02562 * 11 10 9 34 34 H 1.08998 * 113.28412 * 166.93796 * 14 2 1 35 35 H 1.09000 * 113.46781 * 332.94247 * 15 14 2 36 36 H 1.08993 * 113.47260 * 202.49595 * 15 14 2 37 37 H 0.97004 * 120.00131 * 5.00978 * 20 19 17 38 38 H 1.08997 * 113.47159 * 87.43886 * 25 16 15 39 39 H 1.08997 * 113.46491 * 217.87954 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3506 1.1708 -0.1233 5 6 1.4377 2.3901 0.1433 6 6 0.0885 2.5247 0.4580 7 6 -0.1982 3.8747 0.5055 8 6 0.9770 4.5656 0.2096 9 6 1.2720 5.9369 0.1119 10 6 2.5412 6.3225 -0.2012 11 6 3.5324 5.3588 -0.4200 12 7 3.2626 4.0837 -0.3299 13 7 1.9708 3.6462 -0.0101 14 6 2.1976 -1.2687 0.0006 15 6 1.9061 -2.1633 1.2134 16 7 0.7773 -2.7291 0.4592 17 6 -0.4240 -3.3087 0.7692 18 1 -0.6793 -3.5037 1.8003 19 6 -1.3136 -3.6453 -0.2418 20 7 -2.5030 -4.1215 0.0598 21 14 -0.8228 -3.4223 -2.0303 22 1 -1.8854 -3.9756 -2.9078 23 1 -0.6459 -1.9764 -2.3185 24 1 0.4530 -4.1378 -2.2864 25 6 1.5095 -2.4047 -0.7742 26 1 -0.3633 0.1075 1.0220 27 1 -0.3633 0.8313 -0.6041 28 1 -0.3632 -0.9389 -0.4180 29 1 -0.6079 1.7186 0.6353 30 1 -1.1590 4.3154 0.7270 31 1 0.5024 6.6753 0.2818 32 1 2.7824 7.3723 -0.2801 33 1 4.5354 5.6740 -0.6672 34 1 3.2576 -1.1543 -0.2258 35 1 1.6006 -1.6071 2.0996 36 1 2.6958 -2.8856 1.4198 37 1 -2.7856 -4.1694 0.9866 38 1 2.1948 -3.1906 -1.0918 39 1 0.8663 -2.0541 -1.5813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044019067.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:47 Heat of formation + Delta-G solvation = 182.153546 kcal Electronic energy + Delta-G solvation = -24381.721622 eV Core-core repulsion = 20909.728088 eV Total energy + Delta-G solvation = -3471.993533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.13507 -39.94215 -38.09574 -37.16080 -34.38181 -33.42139 -32.39936 -30.58867 -29.16461 -28.07420 -26.55613 -25.37905 -25.06562 -23.46264 -22.20003 -21.26499 -20.56804 -18.84558 -17.72689 -17.37255 -17.33794 -16.54035 -16.03953 -15.89222 -15.66341 -14.84897 -14.78637 -14.15444 -14.01607 -13.75423 -13.54567 -13.24313 -12.95759 -12.71868 -12.59462 -12.49874 -12.16865 -11.79185 -11.33364 -10.96981 -10.89295 -10.87004 -10.67564 -10.54747 -10.34872 -9.64009 -9.24769 -9.18114 -8.98647 -8.93302 -8.19797 -7.83208 -7.17219 -6.33687 -3.26608 0.28636 0.85675 1.76890 2.22649 3.06190 3.30069 3.33805 3.42051 3.57445 3.61350 4.13177 4.27082 4.39344 4.53535 4.67576 4.71320 4.90489 5.05890 5.17236 5.21557 5.38110 5.44687 5.53576 5.63232 5.71468 5.85721 5.87164 5.97377 6.02057 6.04543 6.21756 6.23888 6.38222 6.41527 6.45075 6.62259 6.66976 7.05352 7.09532 7.49472 7.78103 8.20420 8.47629 8.94322 9.45634 10.32752 11.17643 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.025861 B = 0.004149 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.438334 B = 6746.393113 C = 7217.087623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.570 5.570 3 C 0.579 3.421 4 O -0.541 6.541 5 C -0.013 4.013 6 C -0.127 4.127 7 C -0.171 4.171 8 C -0.004 4.004 9 C -0.016 4.016 10 C -0.201 4.201 11 C 0.119 3.881 12 N -0.241 5.241 13 N -0.220 5.220 14 C 0.103 3.897 15 C 0.110 3.890 16 N -0.626 5.626 17 C -0.299 4.299 18 H 0.083 0.917 19 C -0.023 4.023 20 N -0.934 5.934 21 Si 1.066 2.934 22 H -0.295 1.295 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.079 3.921 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.187 0.813 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.194 0.806 34 H 0.108 0.892 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.261 0.739 38 H 0.056 0.944 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.161 21.928 -0.596 23.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.302 5.302 3 C 0.370 3.630 4 O -0.420 6.420 5 C -0.131 4.131 6 C -0.151 4.151 7 C -0.197 4.197 8 C -0.115 4.115 9 C -0.042 4.042 10 C -0.224 4.224 11 C -0.074 4.074 12 N -0.049 5.049 13 N 0.018 4.982 14 C -0.002 4.002 15 C -0.017 4.017 16 N -0.355 5.355 17 C -0.425 4.425 18 H 0.100 0.900 19 C -0.221 4.221 20 N -0.577 5.577 21 Si 0.899 3.101 22 H -0.223 1.223 23 H -0.218 1.218 24 H -0.217 1.217 25 C -0.047 4.047 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.204 0.796 30 H 0.174 0.826 31 H 0.172 0.828 32 H 0.166 0.834 33 H 0.210 0.790 34 H 0.125 0.875 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.828 20.607 -2.318 22.166 hybrid contribution 0.121 0.907 1.764 1.987 sum 7.949 21.514 -0.554 22.942 Atomic orbital electron populations 1.22625 0.78659 1.05091 1.01703 1.46996 1.07343 1.04162 1.71652 1.15667 0.86745 0.82528 0.78103 1.90845 1.13349 1.87321 1.50520 1.19012 0.93129 0.83398 1.17536 1.22635 0.93336 0.98145 1.00974 1.21134 0.96717 0.93028 1.08770 1.19472 0.90708 0.90429 1.10937 1.20897 0.97474 0.92775 0.93079 1.21430 0.93474 1.01466 1.06076 1.24122 1.01377 0.88435 0.93482 1.76162 0.96026 1.17175 1.15533 1.45435 1.04633 1.06045 1.42055 1.22458 0.95856 0.82611 0.99320 1.22789 0.90530 0.93248 0.95161 1.46289 1.15376 1.72495 1.01296 1.20153 0.89140 1.38015 0.95215 0.89977 1.25600 0.94017 0.98624 1.03905 1.70908 1.18675 1.47327 1.20759 0.83821 0.74567 0.75418 0.76258 1.22255 1.21815 1.21679 1.23291 0.94531 0.93998 0.92872 0.91947 0.91183 0.87676 0.79607 0.82624 0.82812 0.83415 0.78972 0.87451 0.93249 0.93333 0.92838 0.92627 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.09 7.80 59.85 0.47 1.56 16 2 N -0.57 -10.78 3.12 -176.93 -0.55 -11.33 16 3 C 0.58 11.21 7.46 -14.94 -0.11 11.10 16 4 O -0.54 -11.83 16.02 5.11 0.08 -11.74 16 5 C -0.01 -0.22 6.67 -83.74 -0.56 -0.78 16 6 C -0.13 -1.77 8.56 -39.28 -0.34 -2.11 16 7 C -0.17 -2.00 10.92 -39.17 -0.43 -2.43 16 8 C 0.00 -0.05 6.80 -84.12 -0.57 -0.62 16 9 C -0.02 -0.13 10.11 -39.39 -0.40 -0.53 16 10 C -0.20 -1.47 10.04 -39.63 -0.40 -1.86 16 11 C 0.12 1.13 11.29 -17.41 -0.20 0.93 16 12 N -0.24 -3.63 11.35 30.61 0.35 -3.28 16 13 N -0.22 -3.49 4.01 -8.28 -0.03 -3.53 16 14 C 0.10 1.98 4.70 -67.67 -0.32 1.66 16 15 C 0.11 2.21 8.31 -8.50 -0.07 2.14 16 16 N -0.63 -14.74 2.39 -184.61 -0.44 -15.19 16 17 C -0.30 -8.17 10.52 -15.06 -0.16 -8.33 16 18 H 0.08 2.40 8.05 -52.49 -0.42 1.97 16 19 C -0.02 -0.64 5.46 -17.43 -0.10 -0.74 16 20 N -0.93 -28.40 13.70 55.49 0.76 -27.64 16 21 Si 1.07 25.98 24.16 -169.99 -4.11 21.87 16 22 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.29 -6.49 5.81 56.52 0.33 -6.17 16 24 H -0.29 -6.78 6.71 56.52 0.38 -6.40 16 25 C 0.08 1.67 5.00 -8.37 -0.04 1.63 16 26 H 0.06 1.05 7.14 -51.93 -0.37 0.68 16 27 H 0.07 1.08 5.46 -51.93 -0.28 0.79 16 28 H 0.10 2.23 3.52 -51.93 -0.18 2.04 16 29 H 0.19 2.38 4.24 -52.49 -0.22 2.16 16 30 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 32 H 0.15 0.51 8.06 -52.48 -0.42 0.09 16 33 H 0.19 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.11 1.99 7.26 -51.93 -0.38 1.61 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.26 7.86 8.73 -40.82 -0.36 7.51 16 38 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 39 H 0.06 1.32 3.42 -51.93 -0.18 1.14 16 LS Contribution 312.44 15.07 4.71 4.71 Total: -1.00 -35.85 312.44 -6.69 -42.54 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -4.24 Total: 1.98 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -3.22 Total: 1.62 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.08 Total: -60.97 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -4.11 Total: 21.87 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.85 -6.69 -42.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044019067.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.695 kcal (2) G-P(sol) polarization free energy of solvation -35.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds