Wall clock time and date at job start Tue Mar 31 2020 03:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34772 * 119.99759 * 2 1 4 4 O 1.21794 * 119.99899 * 186.71246 * 3 2 1 5 5 C 1.41697 * 120.00241 * 6.70482 * 3 2 1 6 6 C 1.39190 * 125.87467 * 8.57987 * 5 3 2 7 7 C 1.38091 * 107.67538 * 179.83283 * 6 5 3 8 8 C 1.39501 * 107.57130 * 0.41727 * 7 6 5 9 9 C 1.40611 * 132.41520 * 179.78011 * 8 7 6 10 10 C 1.36289 * 119.16153 * 180.02562 * 9 8 7 11 11 C 1.39969 * 120.03921 * 359.95997 * 10 9 8 12 12 N 1.30643 * 120.99295 * 0.02562 * 11 10 9 13 13 N 1.37157 * 108.20458 * 359.73843 * 8 7 6 14 14 C 1.46495 * 120.00033 * 179.97438 * 2 1 3 15 15 C 1.53498 * 114.20962 * 300.00084 * 14 2 1 16 16 N 1.47074 * 87.98401 * 87.71688 * 15 14 2 17 17 C 1.36939 * 136.05849 * 207.08421 * 16 15 14 18 18 H 1.08001 * 119.99330 * 354.94923 * 17 16 15 19 19 C 1.38810 * 119.99852 * 174.94266 * 17 16 15 20 20 N 1.31619 * 119.99666 * 184.42151 * 19 17 16 21 21 Si 1.86800 * 120.00078 * 4.42571 * 19 17 16 22 22 H 1.48499 * 109.47068 * 174.43620 * 21 19 17 23 23 H 1.48494 * 109.47002 * 294.43685 * 21 19 17 24 24 H 1.48496 * 109.47185 * 54.43813 * 21 19 17 25 25 C 1.47063 * 87.88376 * 27.34530 * 16 15 14 26 26 H 1.08997 * 109.46993 * 276.00279 * 1 2 3 27 27 H 1.08998 * 109.47081 * 36.00604 * 1 2 3 28 28 H 1.09001 * 109.46332 * 156.00304 * 1 2 3 29 29 H 1.07995 * 126.15774 * 359.96944 * 6 5 3 30 30 H 1.08002 * 126.20675 * 180.15455 * 7 6 5 31 31 H 1.08005 * 120.41939 * 359.97438 * 9 8 7 32 32 H 1.08009 * 119.97934 * 179.97438 * 10 9 8 33 33 H 1.08002 * 119.50159 * 180.02562 * 11 10 9 34 34 H 1.08998 * 113.28412 * 166.93796 * 14 2 1 35 35 H 1.09000 * 113.46781 * 332.94247 * 15 14 2 36 36 H 1.08993 * 113.47260 * 202.49595 * 15 14 2 37 37 H 0.97004 * 120.00131 * 5.00978 * 20 19 17 38 38 H 1.08997 * 113.47159 * 87.43886 * 25 16 15 39 39 H 1.08997 * 113.46491 * 217.87954 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3506 1.1708 -0.1233 5 6 1.4377 2.3901 0.1433 6 6 0.0885 2.5247 0.4580 7 6 -0.1982 3.8747 0.5055 8 6 0.9770 4.5656 0.2096 9 6 1.2720 5.9369 0.1119 10 6 2.5412 6.3225 -0.2012 11 6 3.5324 5.3588 -0.4200 12 7 3.2626 4.0837 -0.3299 13 7 1.9708 3.6462 -0.0101 14 6 2.1976 -1.2687 0.0006 15 6 1.9061 -2.1633 1.2134 16 7 0.7773 -2.7291 0.4592 17 6 -0.4240 -3.3087 0.7692 18 1 -0.6793 -3.5037 1.8003 19 6 -1.3136 -3.6453 -0.2418 20 7 -2.5030 -4.1215 0.0598 21 14 -0.8228 -3.4223 -2.0303 22 1 -1.8854 -3.9756 -2.9078 23 1 -0.6459 -1.9764 -2.3185 24 1 0.4530 -4.1378 -2.2864 25 6 1.5095 -2.4047 -0.7742 26 1 -0.3633 0.1075 1.0220 27 1 -0.3633 0.8313 -0.6041 28 1 -0.3632 -0.9389 -0.4180 29 1 -0.6079 1.7186 0.6353 30 1 -1.1590 4.3154 0.7270 31 1 0.5024 6.6753 0.2818 32 1 2.7824 7.3723 -0.2801 33 1 4.5354 5.6740 -0.6672 34 1 3.2576 -1.1543 -0.2258 35 1 1.6006 -1.6071 2.0996 36 1 2.6958 -2.8856 1.4198 37 1 -2.7856 -4.1694 0.9866 38 1 2.1948 -3.1906 -1.0918 39 1 0.8663 -2.0541 -1.5813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044019067.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:46 Heat of formation + Delta-G solvation = 156.496617 kcal Electronic energy + Delta-G solvation = -24382.834189 eV Core-core repulsion = 20909.728088 eV Total energy + Delta-G solvation = -3473.106101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.10198 -41.41066 -39.54713 -38.16536 -35.87953 -34.47452 -34.22637 -31.63494 -30.41642 -29.57273 -28.06029 -27.04210 -26.12775 -24.65957 -23.63230 -22.26088 -21.93557 -20.43070 -19.48301 -18.75799 -18.15381 -17.95989 -17.28291 -17.09922 -16.60597 -16.20055 -16.14237 -15.73880 -15.61634 -15.12788 -14.98758 -14.37863 -14.28952 -14.06810 -13.75184 -13.50420 -13.31539 -13.26988 -13.01109 -12.63037 -12.53825 -12.16071 -12.06163 -11.72773 -11.46116 -11.29721 -11.11799 -11.00252 -10.95600 -9.97754 -9.68903 -9.17368 -8.79707 -8.57958 -5.43038 -0.43914 -0.08109 0.85311 1.24060 1.39018 1.47483 1.67337 1.96367 2.20454 2.39039 2.53429 2.94402 3.23448 3.28498 3.55001 3.59836 3.75937 3.83401 3.96197 4.15705 4.25096 4.29681 4.33822 4.47475 4.55592 4.60661 4.61484 4.72537 4.75247 4.80208 4.85104 4.98973 5.07602 5.08504 5.18744 5.23658 5.52323 5.69125 5.69720 5.98150 6.34685 6.64101 6.73561 7.07160 7.34408 8.28279 8.96162 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.025861 B = 0.004149 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.438334 B = 6746.393113 C = 7217.087623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.576 5.576 3 C 0.580 3.420 4 O -0.579 6.579 5 C -0.074 4.074 6 C -0.125 4.125 7 C -0.173 4.173 8 C -0.001 4.001 9 C -0.024 4.024 10 C -0.180 4.180 11 C 0.127 3.873 12 N -0.310 5.310 13 N -0.235 5.235 14 C 0.116 3.884 15 C 0.113 3.887 16 N -0.646 5.646 17 C -0.279 4.279 18 H 0.052 0.948 19 C -0.071 4.071 20 N -0.971 5.971 21 Si 1.098 2.902 22 H -0.307 1.307 23 H -0.263 1.263 24 H -0.273 1.273 25 C 0.078 3.922 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.190 0.810 30 H 0.192 0.808 31 H 0.198 0.802 32 H 0.199 0.801 33 H 0.231 0.769 34 H 0.118 0.882 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.248 0.752 38 H 0.074 0.926 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.197 26.051 -1.371 27.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.307 5.307 3 C 0.373 3.627 4 O -0.461 6.461 5 C -0.190 4.190 6 C -0.149 4.149 7 C -0.198 4.198 8 C -0.114 4.114 9 C -0.050 4.050 10 C -0.203 4.203 11 C -0.064 4.064 12 N -0.119 5.119 13 N 0.003 4.997 14 C 0.010 3.990 15 C -0.014 4.014 16 N -0.375 5.375 17 C -0.406 4.406 18 H 0.070 0.930 19 C -0.264 4.264 20 N -0.616 5.616 21 Si 0.927 3.073 22 H -0.235 1.235 23 H -0.190 1.190 24 H -0.199 1.199 25 C -0.047 4.047 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.206 0.794 30 H 0.209 0.791 31 H 0.215 0.785 32 H 0.216 0.784 33 H 0.247 0.753 34 H 0.136 0.864 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.901 24.744 -3.073 26.475 hybrid contribution -0.067 -0.068 2.096 2.098 sum 8.834 24.676 -0.977 26.228 Atomic orbital electron populations 1.22573 0.78232 1.04207 1.02152 1.47049 1.07586 1.04088 1.71963 1.15994 0.86412 0.83251 0.76999 1.90792 1.14817 1.87841 1.52695 1.18837 0.94384 0.83334 1.22449 1.22687 0.92235 0.99580 1.00412 1.21545 0.98043 0.91939 1.08273 1.20272 0.90185 0.91988 1.09004 1.21522 0.99348 0.91477 0.92681 1.22038 0.92176 1.03329 1.02713 1.25024 1.03661 0.87355 0.90364 1.76142 0.96527 1.20254 1.19001 1.45562 1.05594 1.06162 1.42354 1.22297 0.96290 0.82433 0.97963 1.22940 0.89675 0.93534 0.95240 1.46221 1.15427 1.72286 1.03535 1.19939 0.90758 1.36168 0.93760 0.93011 1.26665 0.93589 0.98841 1.07268 1.71003 1.20335 1.50440 1.19838 0.83433 0.74567 0.77076 0.72260 1.23526 1.19007 1.19859 1.23438 0.94376 0.94990 0.91916 0.91660 0.88837 0.90763 0.79369 0.79104 0.78467 0.78407 0.75263 0.86431 0.93692 0.91235 0.94252 0.90871 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.52 7.80 127.77 1.00 3.52 16 2 N -0.58 -21.95 3.12 -831.85 -2.59 -24.54 16 3 C 0.58 22.94 7.46 85.10 0.63 23.57 16 4 O -0.58 -26.03 16.02 -4.65 -0.07 -26.11 16 5 C -0.07 -2.55 6.67 39.37 0.26 -2.29 16 6 C -0.12 -3.40 8.56 22.46 0.19 -3.21 16 7 C -0.17 -3.66 10.92 22.54 0.25 -3.41 16 8 C 0.00 -0.03 6.80 39.19 0.27 0.24 16 9 C -0.02 -0.29 10.11 22.39 0.23 -0.07 16 10 C -0.18 -1.66 10.04 22.24 0.22 -1.44 16 11 C 0.13 1.99 11.29 85.29 0.96 2.96 16 12 N -0.31 -9.04 11.35 -57.06 -0.65 -9.69 16 13 N -0.24 -7.32 4.01 -180.12 -0.72 -8.04 16 14 C 0.12 4.41 4.70 45.55 0.21 4.63 16 15 C 0.11 4.49 8.31 83.18 0.69 5.18 16 16 N -0.65 -30.45 2.39 -737.98 -1.77 -32.22 16 17 C -0.28 -15.61 10.52 84.03 0.88 -14.73 16 18 H 0.05 3.16 8.05 -2.91 -0.02 3.14 16 19 C -0.07 -4.11 5.46 84.86 0.46 -3.64 16 20 N -0.97 -60.98 13.70 21.65 0.30 -60.68 16 21 Si 1.10 52.60 24.16 68.60 1.66 54.26 16 22 H -0.31 -15.21 7.11 99.48 0.71 -14.50 16 23 H -0.26 -11.37 5.81 99.48 0.58 -10.79 16 24 H -0.27 -12.17 6.71 99.48 0.67 -11.51 16 25 C 0.08 3.22 5.00 83.27 0.42 3.63 16 26 H 0.07 2.25 7.14 -2.39 -0.02 2.23 16 27 H 0.09 2.87 5.46 -2.39 -0.01 2.86 16 28 H 0.07 3.15 3.52 -2.39 -0.01 3.15 16 29 H 0.19 4.77 4.24 -2.91 -0.01 4.76 16 30 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 31 H 0.20 0.60 8.06 -2.91 -0.02 0.58 16 32 H 0.20 -0.13 8.06 -2.91 -0.02 -0.15 16 33 H 0.23 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.12 4.29 7.26 -2.39 -0.02 4.28 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.25 15.66 8.73 -92.71 -0.81 14.85 16 38 H 0.07 2.81 8.08 -2.39 -0.02 2.79 16 39 H 0.06 2.36 3.42 -2.39 -0.01 2.35 16 Total: -1.00 -83.57 312.44 3.72 -79.85 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.89 Total: 12.23 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 6.68 Total: 14.94 kcal Atomic # 7 Polarization: -129.74 SS G_CDS: -5.43 Total: -135.17 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.07 Total: -26.11 kcal Atomic # 14 Polarization: 52.60 SS G_CDS: 1.66 Total: 54.26 kcal Total: -83.57 3.72 -79.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044019067.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.348 kcal (2) G-P(sol) polarization free energy of solvation -83.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds