Wall clock time and date at job start Tue Mar 31 2020 03:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 119.99952 * 2 1 4 4 O 1.21594 * 120.00194 * 185.53572 * 3 2 1 5 5 C 1.47534 * 120.00005 * 5.53440 * 3 2 1 6 6 C 1.39441 * 120.24463 * 41.95774 * 5 3 2 7 7 C 1.38293 * 120.27747 * 179.79001 * 6 5 3 8 8 C 1.37882 * 120.72501 * 0.46719 * 7 6 5 9 9 C 1.39677 * 120.10865 * 359.79337 * 8 7 6 10 10 N 1.35856 * 133.50948 * 179.97438 * 9 8 7 11 11 C 1.30091 * 109.53164 * 179.97438 * 10 9 8 12 12 N 1.36113 * 110.05455 * 359.97438 * 11 10 9 13 13 H 0.96998 * 126.31378 * 180.02562 * 12 11 10 14 14 C 1.37519 * 107.38176 * 359.97438 * 12 11 10 15 15 C 1.46498 * 120.00052 * 179.97438 * 2 1 3 16 16 C 1.53491 * 114.20961 * 299.99858 * 15 2 1 17 17 N 1.47069 * 87.98341 * 87.71741 * 16 15 2 18 18 C 1.36942 * 136.05927 * 207.08893 * 17 16 15 19 19 H 1.08000 * 119.99538 * 354.44291 * 18 17 16 20 20 C 1.38811 * 120.00176 * 174.44326 * 18 17 16 21 21 N 1.31622 * 119.99624 * 178.50446 * 20 18 17 22 22 Si 1.86800 * 119.99765 * 358.50851 * 20 18 17 23 23 H 1.48503 * 109.46739 * 174.16568 * 22 20 18 24 24 H 1.48500 * 109.47029 * 294.16334 * 22 20 18 25 25 H 1.48493 * 109.47367 * 54.16648 * 22 20 18 26 26 C 1.47068 * 87.88576 * 27.34112 * 17 16 15 27 27 H 1.09000 * 109.47012 * 274.20792 * 1 2 3 28 28 H 1.08999 * 109.47284 * 34.20089 * 1 2 3 29 29 H 1.08994 * 109.46854 * 154.20597 * 1 2 3 30 30 H 1.08000 * 119.86064 * 359.97438 * 6 5 3 31 31 H 1.07994 * 119.63273 * 180.26102 * 7 6 5 32 32 H 1.07996 * 119.94576 * 179.76694 * 8 7 6 33 33 H 1.08010 * 124.96823 * 180.02562 * 11 10 9 34 34 H 1.09003 * 113.27926 * 166.92963 * 15 2 1 35 35 H 1.09006 * 113.46785 * 332.93961 * 16 15 2 36 36 H 1.08994 * 113.47129 * 202.49537 * 16 15 2 37 37 H 0.97001 * 120.00361 * 5.05442 * 21 20 18 38 38 H 1.09003 * 113.46196 * 87.43530 * 26 17 16 39 39 H 1.08998 * 113.46954 * 217.87854 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3506 1.1697 -0.1016 5 6 1.4064 2.4419 0.1232 6 6 0.3510 2.5610 1.0267 7 6 -0.3333 3.7568 1.1459 8 6 0.0083 4.8443 0.3701 9 6 1.0582 4.7492 -0.5462 10 7 1.6137 5.6226 -1.4262 11 6 2.5866 5.0390 -2.0627 12 7 2.7206 3.7541 -1.6339 13 1 3.3716 3.1081 -1.9497 14 6 1.7636 3.5410 -0.6695 15 6 2.1975 -1.2687 0.0006 16 6 1.9061 -2.1632 1.2133 17 7 0.7774 -2.7291 0.4592 18 6 -0.4240 -3.3086 0.7693 19 1 -0.6759 -3.5111 1.7998 20 6 -1.3181 -3.6357 -0.2409 21 7 -2.4601 -4.2195 0.0546 22 14 -0.9002 -3.2476 -2.0197 23 1 -1.9435 -3.8184 -2.9091 24 1 -0.8434 -1.7752 -2.2049 25 1 0.4182 -3.8404 -2.3593 26 6 1.5095 -2.4046 -0.7743 27 1 -0.3633 0.0754 1.0249 28 1 -0.3634 0.8499 -0.5776 29 1 -0.3633 -0.9252 -0.4472 30 1 0.0687 1.7166 1.6381 31 1 -1.1463 3.8387 1.8520 32 1 -0.5370 5.7710 0.4708 33 1 3.1990 5.5060 -2.8200 34 1 3.2576 -1.1542 -0.2259 35 1 1.6007 -1.6070 2.0996 36 1 2.6958 -2.8855 1.4198 37 1 -2.7099 -4.3549 0.9821 38 1 2.1948 -3.1906 -1.0918 39 1 0.8663 -2.0540 -1.5814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044080804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:55 Heat of formation + Delta-G solvation = 124.026162 kcal Electronic energy + Delta-G solvation = -24493.912239 eV Core-core repulsion = 21019.398113 eV Total energy + Delta-G solvation = -3474.514126 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.31696 -40.19377 -38.27267 -37.08484 -34.34696 -33.23356 -32.40370 -30.30266 -29.57365 -28.24826 -26.48890 -25.45315 -24.42134 -22.88472 -22.38154 -21.81767 -20.39111 -18.78358 -17.99004 -17.75331 -17.41264 -16.64417 -16.26475 -15.62146 -15.42542 -15.10943 -14.80332 -14.32137 -14.14732 -13.88259 -13.71900 -13.30478 -12.98167 -12.85157 -12.23786 -12.12320 -12.02437 -11.81697 -11.43337 -11.32563 -11.01540 -10.86592 -10.68639 -10.49290 -10.43676 -9.72313 -9.33766 -9.17564 -9.08823 -8.59764 -8.37546 -8.21857 -7.26637 -6.40084 -3.34277 0.53857 1.34415 2.39233 2.78354 2.92354 3.13479 3.25981 3.32974 3.54331 3.71865 4.05518 4.39747 4.46462 4.60500 4.73660 4.85094 5.04043 5.08676 5.14936 5.24344 5.31240 5.55051 5.57188 5.71034 5.76517 5.83896 5.96882 6.07615 6.11719 6.12566 6.24131 6.26464 6.29105 6.31194 6.56423 6.61950 6.88361 6.97601 7.14257 7.60696 7.63625 8.13812 8.21015 8.87370 9.38572 10.24163 11.11294 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.004509 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.726020 B = 6208.691516 C = 6481.292024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.571 5.571 3 C 0.558 3.442 4 O -0.554 6.554 5 C -0.120 4.120 6 C -0.061 4.061 7 C -0.135 4.135 8 C -0.042 4.042 9 C 0.034 3.966 10 N -0.495 5.495 11 C 0.260 3.740 12 N -0.592 5.592 13 H 0.430 0.570 14 C 0.094 3.906 15 C 0.095 3.905 16 C 0.112 3.888 17 N -0.625 5.625 18 C -0.302 4.302 19 H 0.083 0.917 20 C -0.022 4.022 21 N -0.933 5.933 22 Si 1.066 2.934 23 H -0.295 1.295 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.088 3.912 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.218 0.782 34 H 0.108 0.892 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.262 0.738 38 H 0.057 0.943 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.287 16.801 -2.065 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.300 5.300 3 C 0.347 3.653 4 O -0.434 6.434 5 C -0.126 4.126 6 C -0.081 4.081 7 C -0.155 4.155 8 C -0.062 4.062 9 C -0.083 4.083 10 N -0.215 5.215 11 C -0.028 4.028 12 N -0.202 5.202 13 H 0.270 0.730 14 C -0.019 4.019 15 C -0.010 4.010 16 C -0.016 4.016 17 N -0.354 5.354 18 C -0.428 4.428 19 H 0.100 0.900 20 C -0.221 4.221 21 N -0.575 5.575 22 Si 0.900 3.100 23 H -0.222 1.222 24 H -0.219 1.219 25 H -0.217 1.217 26 C -0.038 4.038 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.160 0.840 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.234 0.766 34 H 0.125 0.875 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.790 17.346 -3.695 19.370 hybrid contribution 1.173 -1.194 1.540 2.275 sum 8.964 16.151 -2.155 18.597 Atomic orbital electron populations 1.22227 0.78010 1.04513 1.02216 1.47303 1.07731 1.04468 1.70487 1.18269 0.86895 0.83483 0.76633 1.90727 1.13642 1.87535 1.51500 1.18769 1.00314 0.92165 1.01349 1.21415 0.92007 0.98584 0.96104 1.20875 1.01360 0.92268 1.01012 1.20433 0.93910 0.99149 0.92715 1.19017 0.99506 0.89696 1.00115 1.70503 1.10145 1.30958 1.09878 1.25404 0.96903 0.81207 0.99240 1.43161 1.29991 1.14071 1.33000 0.73047 1.18570 0.93094 0.96330 0.93918 1.22571 0.95836 0.82931 0.99677 1.22764 0.90628 0.93184 0.95012 1.46227 1.15354 1.72625 1.01209 1.20142 0.89297 1.37982 0.95356 0.89966 1.25614 0.94230 0.98322 1.03922 1.70906 1.22754 1.43079 1.20776 0.83812 0.74591 0.75318 0.76241 1.22225 1.21941 1.21670 1.23202 0.94220 0.93850 0.92488 0.92154 0.92233 0.87756 0.83981 0.84456 0.84901 0.76589 0.87467 0.93235 0.93210 0.92758 0.92502 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.25 8.14 59.85 0.49 1.74 16 2 N -0.57 -9.82 3.12 -174.79 -0.54 -10.37 16 3 C 0.56 9.27 7.28 -12.47 -0.09 9.18 16 4 O -0.55 -10.10 16.29 5.28 0.09 -10.02 16 5 C -0.12 -1.75 4.95 -104.94 -0.52 -2.27 16 6 C -0.06 -0.77 7.92 -39.11 -0.31 -1.08 16 7 C -0.13 -1.44 9.99 -39.69 -0.40 -1.84 16 8 C -0.04 -0.49 10.09 -39.17 -0.40 -0.88 16 9 C 0.03 0.47 7.22 -84.72 -0.61 -0.15 16 10 N -0.50 -6.38 11.28 -12.05 -0.14 -6.51 16 11 C 0.26 2.53 12.97 -89.73 -1.16 1.36 16 12 N -0.59 -6.72 6.21 -11.56 -0.07 -6.80 16 13 H 0.43 4.31 8.79 -40.82 -0.36 3.95 16 14 C 0.09 1.31 6.91 -83.77 -0.58 0.73 16 15 C 0.09 1.69 4.69 -67.68 -0.32 1.37 16 16 C 0.11 2.12 8.31 -8.50 -0.07 2.04 16 17 N -0.63 -14.24 2.41 -184.61 -0.45 -14.68 16 18 C -0.30 -8.08 10.61 -15.06 -0.16 -8.24 16 19 H 0.08 2.36 8.05 -52.49 -0.42 1.93 16 20 C -0.02 -0.61 5.49 -17.43 -0.10 -0.70 16 21 N -0.93 -28.12 13.70 55.49 0.76 -27.36 16 22 Si 1.07 25.49 23.85 -169.99 -4.05 21.43 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -6.39 5.89 56.52 0.33 -6.06 16 25 H -0.29 -6.54 6.36 56.52 0.36 -6.18 16 26 C 0.09 1.78 5.02 -8.37 -0.04 1.74 16 27 H 0.06 0.99 6.65 -51.93 -0.35 0.64 16 28 H 0.06 0.92 6.67 -51.93 -0.35 0.57 16 29 H 0.10 2.16 2.98 -51.93 -0.15 2.01 16 30 H 0.14 1.70 5.95 -52.49 -0.31 1.39 16 31 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.22 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.11 1.79 7.26 -51.93 -0.38 1.41 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.26 7.82 8.73 -40.82 -0.36 7.46 16 38 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 39 H 0.05 1.09 3.46 -51.93 -0.18 0.91 16 LS Contribution 312.89 15.07 4.72 4.72 Total: -1.00 -33.51 312.89 -8.25 -41.76 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -4.29 Total: 4.82 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -4.26 Total: 3.01 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -0.44 Total: -65.72 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -4.05 Total: 21.43 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.51 -8.25 -41.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044080804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.789 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds