Wall clock time and date at job start Tue Mar 31 2020 03:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 119.99952 * 2 1 4 4 O 1.21594 * 120.00194 * 185.53572 * 3 2 1 5 5 C 1.47534 * 120.00005 * 5.53440 * 3 2 1 6 6 C 1.39441 * 120.24463 * 41.95774 * 5 3 2 7 7 C 1.38293 * 120.27747 * 179.79001 * 6 5 3 8 8 C 1.37882 * 120.72501 * 0.46719 * 7 6 5 9 9 C 1.39677 * 120.10865 * 359.79337 * 8 7 6 10 10 N 1.35856 * 133.50948 * 179.97438 * 9 8 7 11 11 C 1.30091 * 109.53164 * 179.97438 * 10 9 8 12 12 N 1.36113 * 110.05455 * 359.97438 * 11 10 9 13 13 H 0.96998 * 126.31378 * 180.02562 * 12 11 10 14 14 C 1.37519 * 107.38176 * 359.97438 * 12 11 10 15 15 C 1.46498 * 120.00052 * 179.97438 * 2 1 3 16 16 C 1.53491 * 114.20961 * 299.99858 * 15 2 1 17 17 N 1.47069 * 87.98341 * 87.71741 * 16 15 2 18 18 C 1.36942 * 136.05927 * 207.08893 * 17 16 15 19 19 H 1.08000 * 119.99538 * 354.44291 * 18 17 16 20 20 C 1.38811 * 120.00176 * 174.44326 * 18 17 16 21 21 N 1.31622 * 119.99624 * 178.50446 * 20 18 17 22 22 Si 1.86800 * 119.99765 * 358.50851 * 20 18 17 23 23 H 1.48503 * 109.46739 * 174.16568 * 22 20 18 24 24 H 1.48500 * 109.47029 * 294.16334 * 22 20 18 25 25 H 1.48493 * 109.47367 * 54.16648 * 22 20 18 26 26 C 1.47068 * 87.88576 * 27.34112 * 17 16 15 27 27 H 1.09000 * 109.47012 * 274.20792 * 1 2 3 28 28 H 1.08999 * 109.47284 * 34.20089 * 1 2 3 29 29 H 1.08994 * 109.46854 * 154.20597 * 1 2 3 30 30 H 1.08000 * 119.86064 * 359.97438 * 6 5 3 31 31 H 1.07994 * 119.63273 * 180.26102 * 7 6 5 32 32 H 1.07996 * 119.94576 * 179.76694 * 8 7 6 33 33 H 1.08010 * 124.96823 * 180.02562 * 11 10 9 34 34 H 1.09003 * 113.27926 * 166.92963 * 15 2 1 35 35 H 1.09006 * 113.46785 * 332.93961 * 16 15 2 36 36 H 1.08994 * 113.47129 * 202.49537 * 16 15 2 37 37 H 0.97001 * 120.00361 * 5.05442 * 21 20 18 38 38 H 1.09003 * 113.46196 * 87.43530 * 26 17 16 39 39 H 1.08998 * 113.46954 * 217.87854 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3506 1.1697 -0.1016 5 6 1.4064 2.4419 0.1232 6 6 0.3510 2.5610 1.0267 7 6 -0.3333 3.7568 1.1459 8 6 0.0083 4.8443 0.3701 9 6 1.0582 4.7492 -0.5462 10 7 1.6137 5.6226 -1.4262 11 6 2.5866 5.0390 -2.0627 12 7 2.7206 3.7541 -1.6339 13 1 3.3716 3.1081 -1.9497 14 6 1.7636 3.5410 -0.6695 15 6 2.1975 -1.2687 0.0006 16 6 1.9061 -2.1632 1.2133 17 7 0.7774 -2.7291 0.4592 18 6 -0.4240 -3.3086 0.7693 19 1 -0.6759 -3.5111 1.7998 20 6 -1.3181 -3.6357 -0.2409 21 7 -2.4601 -4.2195 0.0546 22 14 -0.9002 -3.2476 -2.0197 23 1 -1.9435 -3.8184 -2.9091 24 1 -0.8434 -1.7752 -2.2049 25 1 0.4182 -3.8404 -2.3593 26 6 1.5095 -2.4046 -0.7743 27 1 -0.3633 0.0754 1.0249 28 1 -0.3634 0.8499 -0.5776 29 1 -0.3633 -0.9252 -0.4472 30 1 0.0687 1.7166 1.6381 31 1 -1.1463 3.8387 1.8520 32 1 -0.5370 5.7710 0.4708 33 1 3.1990 5.5060 -2.8200 34 1 3.2576 -1.1542 -0.2259 35 1 1.6007 -1.6070 2.0996 36 1 2.6958 -2.8855 1.4198 37 1 -2.7099 -4.3549 0.9821 38 1 2.1948 -3.1906 -1.0918 39 1 0.8663 -2.0540 -1.5814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044080804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:55 Heat of formation + Delta-G solvation = 101.417205 kcal Electronic energy + Delta-G solvation = -24494.892637 eV Core-core repulsion = 21019.398113 eV Total energy + Delta-G solvation = -3475.494524 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.20228 -41.57596 -39.69295 -38.06617 -35.77801 -34.51104 -34.05925 -31.33732 -30.51295 -29.92744 -27.92944 -27.02721 -25.66383 -24.12067 -23.44438 -22.91896 -21.71333 -20.28142 -19.49244 -18.93593 -18.63059 -17.98302 -17.49846 -16.77184 -16.56017 -16.21146 -16.07448 -15.80327 -15.69977 -15.12679 -15.01932 -14.71655 -14.32428 -14.21812 -13.58790 -13.33247 -13.19192 -13.03299 -12.80163 -12.68946 -12.61812 -12.34186 -12.18703 -11.79632 -11.46598 -11.23234 -11.12858 -11.05037 -10.85916 -9.72887 -9.47998 -9.22242 -9.20214 -8.59509 -5.45320 -0.39972 0.42924 1.35969 1.36546 1.44396 1.64828 1.75977 1.95265 2.00138 2.51784 2.77520 2.91429 3.22292 3.24027 3.39591 3.54609 3.84238 3.95212 4.13640 4.22540 4.24666 4.29273 4.32577 4.41401 4.53104 4.58263 4.61581 4.74122 4.76156 4.84309 4.93727 5.06443 5.18569 5.20725 5.36274 5.40035 5.49322 5.76787 5.96753 6.26066 6.38462 6.71741 6.79576 6.91499 7.33219 8.26105 8.94759 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.004509 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.726020 B = 6208.691516 C = 6481.292024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.575 5.575 3 C 0.564 3.436 4 O -0.572 6.572 5 C -0.143 4.143 6 C -0.064 4.064 7 C -0.128 4.128 8 C -0.043 4.043 9 C 0.016 3.984 10 N -0.527 5.527 11 C 0.277 3.723 12 N -0.593 5.593 13 H 0.434 0.566 14 C 0.072 3.928 15 C 0.112 3.888 16 C 0.112 3.888 17 N -0.648 5.648 18 C -0.278 4.278 19 H 0.051 0.949 20 C -0.074 4.074 21 N -0.973 5.973 22 Si 1.099 2.901 23 H -0.311 1.311 24 H -0.264 1.264 25 H -0.268 1.268 26 C 0.084 3.916 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.144 0.856 31 H 0.168 0.832 32 H 0.154 0.846 33 H 0.266 0.734 34 H 0.126 0.874 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.248 0.752 38 H 0.074 0.926 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.881 18.982 -2.992 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.305 5.305 3 C 0.354 3.646 4 O -0.454 6.454 5 C -0.149 4.149 6 C -0.084 4.084 7 C -0.148 4.148 8 C -0.062 4.062 9 C -0.102 4.102 10 N -0.247 5.247 11 C -0.009 4.009 12 N -0.204 5.204 13 H 0.275 0.725 14 C -0.041 4.041 15 C 0.007 3.993 16 C -0.014 4.014 17 N -0.377 5.377 18 C -0.405 4.405 19 H 0.069 0.931 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.928 3.072 23 H -0.240 1.240 24 H -0.191 1.191 25 H -0.194 1.194 26 C -0.041 4.041 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.162 0.838 31 H 0.186 0.814 32 H 0.172 0.828 33 H 0.282 0.718 34 H 0.144 0.856 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.445 19.558 -4.600 22.201 hybrid contribution 0.767 -1.771 1.913 2.717 sum 10.212 17.787 -2.687 20.685 Atomic orbital electron populations 1.22091 0.78151 1.03445 1.02455 1.47342 1.07627 1.04575 1.70925 1.18535 0.86693 0.83774 0.75590 1.90704 1.14490 1.87830 1.52348 1.18711 1.01582 0.91441 1.03149 1.21553 0.91664 0.99486 0.95652 1.21183 1.01488 0.91152 1.00987 1.20798 0.93341 1.00180 0.91918 1.19420 1.00171 0.89784 1.00808 1.70524 1.11704 1.31557 1.10938 1.26399 0.95790 0.80285 0.98462 1.43278 1.29693 1.14813 1.32616 0.72497 1.18749 0.94145 0.96395 0.94810 1.22397 0.96515 0.82525 0.97841 1.22948 0.89585 0.93564 0.95319 1.46196 1.15358 1.72440 1.03712 1.19923 0.90991 1.35791 0.93806 0.93096 1.26701 0.93870 0.98658 1.07372 1.71007 1.24674 1.46425 1.19772 0.83446 0.74811 0.76829 0.72152 1.23989 1.19139 1.19356 1.23385 0.94093 0.95093 0.91523 0.91817 0.90535 0.90892 0.83820 0.81417 0.82839 0.71838 0.85631 0.93419 0.91188 0.94277 0.90824 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.69 8.14 127.77 1.04 3.73 16 2 N -0.58 -18.76 3.12 -825.17 -2.57 -21.33 16 3 C 0.56 17.78 7.28 86.69 0.63 18.41 16 4 O -0.57 -19.88 16.29 -4.01 -0.07 -19.95 16 5 C -0.14 -3.96 4.95 -20.07 -0.10 -4.06 16 6 C -0.06 -1.50 7.92 22.57 0.18 -1.32 16 7 C -0.13 -2.42 9.99 22.20 0.22 -2.20 16 8 C -0.04 -0.89 10.09 22.53 0.23 -0.66 16 9 C 0.02 0.39 7.22 39.41 0.28 0.68 16 10 N -0.53 -12.44 11.28 -192.03 -2.17 -14.61 16 11 C 0.28 4.62 12.97 180.04 2.34 6.96 16 12 N -0.59 -12.27 6.21 -190.50 -1.18 -13.45 16 13 H 0.43 7.89 8.79 -92.71 -0.81 7.07 16 14 C 0.07 1.91 6.91 39.25 0.27 2.18 16 15 C 0.11 3.73 4.69 45.55 0.21 3.95 16 16 C 0.11 4.05 8.31 83.18 0.69 4.74 16 17 N -0.65 -28.83 2.41 -737.98 -1.78 -30.61 16 18 C -0.28 -15.06 10.61 84.03 0.89 -14.16 16 19 H 0.05 3.03 8.05 -2.91 -0.02 3.00 16 20 C -0.07 -4.17 5.49 84.86 0.47 -3.70 16 21 N -0.97 -60.52 13.70 21.65 0.30 -60.22 16 22 Si 1.10 51.13 23.85 68.60 1.64 52.77 16 23 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 24 H -0.26 -11.04 5.89 99.48 0.59 -10.45 16 25 H -0.27 -11.36 6.36 99.48 0.63 -10.73 16 26 C 0.08 3.20 5.02 83.27 0.42 3.62 16 27 H 0.06 2.03 6.65 -2.39 -0.02 2.01 16 28 H 0.08 2.25 6.67 -2.39 -0.02 2.23 16 29 H 0.07 2.93 2.98 -2.39 -0.01 2.93 16 30 H 0.14 3.24 5.95 -2.91 -0.02 3.22 16 31 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.27 1.28 8.06 -2.91 -0.02 1.25 16 34 H 0.13 3.80 7.26 -2.39 -0.02 3.78 16 35 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.25 15.50 8.73 -92.71 -0.81 14.69 16 38 H 0.07 2.60 8.10 -2.39 -0.02 2.58 16 39 H 0.05 1.85 3.46 -2.39 -0.01 1.85 16 Total: -1.00 -73.88 312.89 2.01 -71.88 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.07 Total: 17.38 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 7.77 Total: 18.15 kcal Atomic # 7 Polarization: -132.82 SS G_CDS: -7.40 Total: -140.23 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.07 Total: -19.95 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 1.64 Total: 52.77 kcal Total: -73.88 2.01 -71.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044080804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.295 kcal (2) G-P(sol) polarization free energy of solvation -73.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds