Wall clock time and date at job start Tue Mar 31 2020 03:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00107 * 2 1 4 4 H 1.48507 * 109.47323 * 265.76685 * 3 2 1 5 5 H 1.48500 * 109.47513 * 25.76683 * 3 2 1 6 6 H 1.48500 * 109.47341 * 145.76773 * 3 2 1 7 7 C 1.38814 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99833 * 344.16794 * 7 2 1 9 9 N 1.36935 * 120.00156 * 164.16688 * 7 2 1 10 10 C 1.47155 * 120.98060 * 328.72177 * 9 7 2 11 11 C 1.53294 * 108.38727 * 230.26162 * 10 9 7 12 12 O 1.42961 * 109.22088 * 307.70269 * 11 10 9 13 13 C 1.42963 * 114.17257 * 62.57939 * 12 11 10 14 14 C 1.47155 * 120.98097 * 148.44452 * 9 7 2 15 15 H 1.08997 * 109.67916 * 249.45899 * 14 9 7 16 16 C 1.52993 * 109.68378 * 10.01458 * 14 9 7 17 17 N 1.46504 * 109.47332 * 299.39546 * 16 14 9 18 18 C 1.34771 * 120.00060 * 179.97438 * 17 16 14 19 19 O 1.21283 * 120.00334 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.99818 * 179.97438 * 18 17 16 21 21 H 1.09001 * 109.52371 * 55.13115 * 20 18 17 22 22 C 1.53147 * 109.52362 * 295.00130 * 20 18 17 23 23 O 1.43075 * 109.14584 * 184.78503 * 22 20 18 24 24 C 1.43072 * 113.59373 * 57.95659 * 23 22 20 25 25 C 1.53147 * 109.15017 * 302.04101 * 24 23 22 26 26 O 1.43070 * 109.14848 * 55.31268 * 25 24 23 27 27 H 0.96996 * 119.99973 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.67998 * 349.98874 * 10 9 7 29 29 H 1.08999 * 109.67784 * 110.54074 * 10 9 7 30 30 H 1.09003 * 109.50987 * 67.62190 * 11 10 9 31 31 H 1.08999 * 109.51488 * 187.72513 * 11 10 9 32 32 H 1.09001 * 109.50956 * 57.34024 * 13 12 11 33 33 H 1.08996 * 109.51371 * 177.44383 * 13 12 11 34 34 H 1.09001 * 109.47482 * 59.39260 * 16 14 9 35 35 H 1.08997 * 109.47244 * 179.39429 * 16 14 9 36 36 H 0.97002 * 119.99641 * 359.97438 * 17 16 14 37 37 H 1.09001 * 109.52446 * 304.68279 * 22 20 18 38 38 H 1.08996 * 109.52158 * 64.88506 * 22 20 18 39 39 H 1.08993 * 109.52840 * 61.94539 * 24 23 22 40 40 H 1.09007 * 109.52528 * 182.07500 * 24 23 22 41 41 H 1.08996 * 109.52158 * 175.21494 * 25 24 23 42 42 H 1.08997 * 109.52111 * 295.34569 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.5872 1.9947 -1.3963 5 1 1.4059 2.6768 0.6086 6 1 3.5002 1.4676 0.7876 7 6 2.0103 -1.2022 0.0005 8 1 1.5009 -2.1197 0.2561 9 7 3.3406 -1.2249 -0.3230 10 6 3.9041 -0.2591 -1.2797 11 6 4.7129 -1.0322 -2.3275 12 8 5.6469 -1.8875 -1.6642 13 6 5.0422 -2.8899 -0.8436 14 6 4.2502 -2.2119 0.2803 15 1 4.9368 -1.7098 0.9619 16 6 3.4393 -3.2604 1.0443 17 7 2.6758 -2.6062 2.1099 18 6 1.8832 -3.3380 2.9177 19 8 1.8015 -4.5380 2.7623 20 6 1.0983 -2.6650 4.0142 21 1 0.4858 -1.8701 3.5886 22 6 2.0636 -2.0715 5.0444 23 8 1.3118 -1.5334 6.1363 24 6 0.4702 -2.4943 6.7808 25 6 -0.4951 -3.0878 5.7506 26 8 0.2566 -3.6258 4.6586 27 1 -0.4850 0.8400 -0.0004 28 1 3.0972 0.2870 -1.7683 29 1 4.5559 0.4395 -0.7551 30 1 4.0383 -1.6333 -2.9373 31 1 5.2503 -0.3293 -2.9641 32 1 4.3688 -3.4976 -1.4480 33 1 5.8170 -3.5239 -0.4127 34 1 2.7533 -3.7591 0.3596 35 1 4.1155 -3.9956 1.4806 36 1 2.7409 -1.6464 2.2339 37 1 2.7304 -2.8521 5.4108 38 1 2.6498 -1.2787 4.5799 39 1 1.0834 -3.2890 7.2055 40 1 -0.0967 -2.0078 7.5747 41 1 -1.0813 -3.8806 6.2151 42 1 -1.1627 -2.3075 5.3851 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050821864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:40 Heat of formation + Delta-G solvation = -126.550976 kcal Electronic energy + Delta-G solvation = -26318.136704 eV Core-core repulsion = 22493.155067 eV Total energy + Delta-G solvation = -3824.981637 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.24716 -39.12399 -38.26618 -35.99569 -35.41484 -33.71536 -32.17832 -31.53328 -30.83934 -28.25614 -27.51701 -25.67461 -24.61100 -23.48073 -22.38977 -21.61661 -20.08438 -19.81047 -17.56833 -16.91726 -16.69211 -16.40868 -16.04991 -15.90930 -15.69544 -15.34868 -15.05273 -14.79557 -14.57278 -14.26508 -13.99893 -13.75187 -13.46598 -13.28771 -12.68087 -12.61052 -12.36212 -12.12169 -11.91036 -11.67391 -11.48345 -11.18255 -10.82341 -10.78124 -10.60955 -10.56418 -10.40942 -9.86576 -9.69458 -9.50333 -9.29635 -9.07317 -8.74851 -8.37703 -7.07653 -6.10278 -3.55577 2.99705 3.17762 3.20342 3.34800 3.36784 3.65336 4.13858 4.27935 4.35643 4.57471 4.60462 4.93884 4.97883 5.01547 5.13737 5.14582 5.27899 5.37469 5.44923 5.50266 5.58803 5.62887 5.71289 5.74707 5.80405 5.85318 5.86827 5.96684 6.07857 6.18478 6.31178 6.46374 6.66709 6.87444 6.93862 7.05612 7.55625 7.75503 8.08781 8.18971 8.71170 8.74054 9.51439 9.89040 11.03362 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.016645 B = 0.005327 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.784555 B = 5254.831730 C = 6191.559339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.030 3.970 3 Si 0.884 3.116 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.270 4.270 8 H 0.097 0.903 9 N -0.607 5.607 10 C 0.090 3.910 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.054 3.946 14 C 0.128 3.872 15 H 0.047 0.953 16 C 0.138 3.862 17 N -0.691 5.691 18 C 0.524 3.476 19 O -0.539 6.539 20 C 0.038 3.962 21 H 0.102 0.898 22 C 0.040 3.960 23 O -0.374 6.374 24 C 0.022 3.978 25 C 0.023 3.977 26 O -0.351 6.351 27 H 0.265 0.735 28 H 0.083 0.917 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.412 0.588 37 H 0.065 0.935 38 H 0.112 0.888 39 H 0.061 0.939 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.262 -2.573 7.757 9.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.171 4.171 3 Si 0.714 3.286 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.398 4.398 8 H 0.114 0.886 9 N -0.333 5.333 10 C -0.036 4.036 11 C -0.032 4.032 12 O -0.306 6.306 13 C -0.024 4.024 14 C 0.021 3.979 15 H 0.065 0.935 16 C 0.014 3.986 17 N -0.344 5.344 18 C 0.308 3.692 19 O -0.416 6.416 20 C -0.023 4.023 21 H 0.120 0.880 22 C -0.038 4.038 23 O -0.293 6.293 24 C -0.055 4.055 25 C -0.055 4.055 26 O -0.269 6.269 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.250 0.750 37 H 0.083 0.917 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.227 -3.323 7.634 9.831 hybrid contribution -0.059 1.609 -0.037 1.611 sum 5.168 -1.713 7.597 9.346 Atomic orbital electron populations 1.69793 1.05621 1.26755 1.52056 1.25376 0.95195 0.97527 0.98955 0.87014 0.79428 0.84519 0.77649 1.21330 1.23090 1.19689 1.19021 0.82368 0.94697 1.43748 0.88571 1.44431 1.05864 1.36154 1.46896 1.22090 0.97196 0.92798 0.91482 1.23062 0.92177 0.93315 0.94641 1.87828 1.33373 1.46228 1.63218 1.22905 0.97051 0.89987 0.92500 1.21462 0.92015 0.90910 0.93509 0.93531 1.21152 0.94221 0.94240 0.88960 1.45836 1.45008 1.12098 1.31426 1.19682 0.79912 0.87207 0.82439 1.90668 1.64405 1.14546 1.71970 1.22590 0.93854 0.92685 0.93186 0.87999 1.23151 0.93114 0.99973 0.87537 1.88113 1.58886 1.35672 1.46611 1.23289 0.93483 0.93267 0.95487 1.23299 0.93955 1.00122 0.88093 1.88203 1.58139 1.34048 1.46490 0.92516 0.89895 0.94855 0.92991 0.89743 0.92880 0.89322 0.90977 0.91882 0.75013 0.91694 0.87047 0.92109 0.87735 0.87542 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.43 13.97 55.49 0.78 -24.65 16 2 C 0.03 0.78 5.30 -17.43 -0.09 0.69 16 3 Si 0.88 20.50 24.26 -169.99 -4.12 16.38 16 4 H -0.29 -6.48 6.42 56.52 0.36 -6.12 16 5 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.27 -6.16 6.79 56.52 0.38 -5.78 16 7 C -0.27 -6.62 7.50 -15.06 -0.11 -6.73 16 8 H 0.10 2.59 6.03 -52.48 -0.32 2.28 16 9 N -0.61 -12.82 2.77 -164.30 -0.46 -13.27 16 10 C 0.09 1.80 4.37 -3.53 -0.02 1.78 16 11 C 0.05 0.79 6.99 37.31 0.26 1.05 16 12 O -0.39 -6.74 10.74 -35.23 -0.38 -7.12 16 13 C 0.05 0.86 6.29 37.31 0.23 1.10 16 14 C 0.13 2.25 3.21 -67.42 -0.22 2.04 16 15 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 16 C 0.14 2.42 4.45 -4.04 -0.02 2.40 16 17 N -0.69 -12.57 3.73 -60.30 -0.22 -12.79 16 18 C 0.52 10.08 7.18 -10.99 -0.08 10.01 16 19 O -0.54 -12.11 16.51 -14.26 -0.24 -12.35 16 20 C 0.04 0.65 3.25 -27.81 -0.09 0.56 16 21 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 22 C 0.04 0.56 6.29 37.23 0.23 0.79 16 23 O -0.37 -5.25 10.85 -48.81 -0.53 -5.78 16 24 C 0.02 0.24 7.05 37.23 0.26 0.51 16 25 C 0.02 0.28 7.05 37.23 0.26 0.54 16 26 O -0.35 -6.06 10.03 -62.51 -0.63 -6.69 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.08 1.80 4.87 -51.93 -0.25 1.55 16 29 H 0.03 0.68 6.87 -51.93 -0.36 0.32 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.43 7.58 -51.93 -0.39 1.03 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.41 7.54 7.22 -40.82 -0.29 7.24 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.11 1.43 8.05 -51.93 -0.42 1.01 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 41 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 328.73 15.07 4.95 4.95 Total: -1.00 -31.67 328.73 -6.51 -38.18 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.30 Total: 8.41 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 0.63 Total: 14.74 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.09 Total: -50.72 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -1.77 Total: -31.93 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.12 Total: 16.38 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.67 -6.51 -38.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050821864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.370 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds