Wall clock time and date at job start Tue Mar 31 2020 03:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.36359 * 125.84492 * 137.14507 * 3 2 1 5 5 C 1.41429 * 107.01627 * 180.22693 * 4 3 2 6 6 C 1.47378 * 126.46721 * 179.79201 * 5 4 3 7 7 O 1.21611 * 119.99500 * 187.07250 * 6 5 4 8 8 N 1.34773 * 119.99760 * 7.07709 * 6 5 4 9 9 C 1.47348 * 125.53409 * 5.25504 * 8 6 5 10 10 C 1.55151 * 104.78557 * 156.49018 * 9 8 6 11 11 C 1.54805 * 101.40186 * 37.52405 * 10 9 8 12 12 H 1.08999 * 112.64198 * 85.17873 * 11 10 9 13 13 C 1.53271 * 109.74271 * 212.12681 * 11 10 9 14 14 N 1.46578 * 108.15665 * 95.76323 * 13 11 10 15 15 C 1.36945 * 125.30367 * 177.88547 * 14 13 11 16 16 H 1.07999 * 119.99701 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00092 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99838 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00113 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47222 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47075 * 120.00325 * 19 17 15 22 22 H 1.48506 * 109.47055 * 240.00050 * 19 17 15 23 23 C 1.46606 * 109.39332 * 357.88458 * 14 13 11 24 24 C 1.47218 * 125.52350 * 185.56943 * 8 6 5 25 25 H 1.08993 * 112.29019 * 56.20480 * 24 8 6 26 26 C 1.38119 * 107.06057 * 359.75683 * 5 4 3 27 27 N 1.34427 * 108.39309 * 359.97438 * 26 5 4 28 28 H 0.97003 * 125.38792 * 179.97438 * 27 26 5 29 29 H 1.08004 * 126.48977 * 359.97438 * 4 3 2 30 30 H 1.09003 * 110.35301 * 275.43963 * 9 8 6 31 31 H 1.08996 * 110.35180 * 37.72804 * 9 8 6 32 32 H 1.08999 * 111.20915 * 279.43798 * 10 9 8 33 33 H 1.09002 * 110.95088 * 155.49509 * 10 9 8 34 34 H 1.09004 * 109.73152 * 215.44888 * 13 11 10 35 35 H 1.08991 * 109.73805 * 336.09746 * 13 11 10 36 36 H 0.97001 * 120.00217 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.91817 * 258.45951 * 23 14 13 38 38 H 1.08996 * 109.91553 * 137.16747 * 23 14 13 39 39 H 1.08008 * 125.80434 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3661 0.8113 -0.7518 5 6 4.7049 0.4736 -0.4453 6 6 5.9162 1.0851 -1.0205 7 8 7.0107 0.6182 -0.7696 8 7 5.8108 2.1615 -1.8246 9 6 4.5649 2.8902 -2.1212 10 6 5.0274 4.3097 -2.5434 11 6 6.3132 3.9875 -3.3430 12 1 6.1089 3.7440 -4.3856 13 6 7.3242 5.1277 -3.1791 14 7 8.2488 4.7667 -2.1005 15 6 9.3172 5.5183 -1.6893 16 1 9.5320 6.4605 -2.1714 17 6 10.1234 5.0695 -0.6522 18 7 9.8612 3.9214 -0.0644 19 14 11.5803 6.0950 -0.0909 20 1 11.6583 7.3328 -0.9074 21 1 11.4104 6.4549 1.3397 22 1 12.8309 5.3120 -0.2591 23 6 7.8515 3.4758 -1.5304 24 6 6.9208 2.7962 -2.5542 25 1 7.4456 2.0934 -3.2012 26 6 4.6627 -0.5367 0.4956 27 7 3.3748 -0.8144 0.7624 28 1 3.0631 -1.4859 1.3891 29 1 3.0380 1.5653 -1.4520 30 1 4.0273 2.4058 -2.9364 31 1 3.9371 2.9453 -1.2319 32 1 5.2523 4.9263 -1.6731 33 1 4.2823 4.7897 -3.1779 34 1 7.8778 5.2651 -4.1080 35 1 6.8016 6.0491 -2.9225 36 1 10.4243 3.6080 0.6606 37 1 7.3198 3.6322 -0.5919 38 1 8.7330 2.8572 -1.3621 39 1 5.5190 -1.0213 0.9411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075698788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:59 Heat of formation + Delta-G solvation = 93.183696 kcal Electronic energy + Delta-G solvation = -24105.992651 eV Core-core repulsion = 20630.141095 eV Total energy + Delta-G solvation = -3475.851556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.71921 -39.78827 -37.53984 -36.71618 -34.93686 -32.48847 -31.49179 -30.58505 -29.94079 -28.51623 -26.74168 -24.57487 -23.59858 -22.72881 -21.75540 -20.60161 -20.02755 -19.23768 -18.23611 -16.85477 -16.44471 -15.96117 -15.55864 -15.17046 -14.89332 -14.52983 -14.44891 -13.93753 -13.53729 -13.38977 -13.36527 -13.20115 -13.05855 -12.75259 -12.42897 -12.25482 -12.07116 -11.77361 -11.47027 -11.13423 -10.99185 -10.76338 -10.33234 -10.10840 -9.96811 -9.71628 -9.64270 -9.47301 -9.35080 -8.60127 -8.53547 -8.06579 -6.74884 -5.56387 -2.98559 1.10687 1.81332 1.97950 2.85693 3.11224 3.35580 3.45097 3.49960 3.52998 3.73441 3.80060 4.55273 4.67239 4.85259 4.86406 4.97319 5.10723 5.25067 5.39796 5.51355 5.55214 5.62485 5.73712 5.74890 5.86917 5.99119 6.09335 6.22491 6.27453 6.36713 6.42814 6.59547 6.70342 6.76694 6.87456 6.95368 7.12730 7.65144 7.71680 7.99258 8.08401 8.45528 8.70451 9.31100 9.91944 10.54185 11.47557 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.021842 B = 0.003885 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.634135 B = 7205.388631 C = 7957.161733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.282 3.718 3 C 0.038 3.962 4 C -0.085 4.085 5 C -0.213 4.213 6 C 0.597 3.403 7 O -0.529 6.529 8 N -0.602 5.602 9 C 0.095 3.905 10 C -0.124 4.124 11 C -0.110 4.110 12 H 0.087 0.913 13 C 0.145 3.855 14 N -0.603 5.603 15 C -0.230 4.230 16 H 0.078 0.922 17 C -0.008 4.008 18 N -0.912 5.912 19 Si 0.911 3.089 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.167 3.833 24 C 0.117 3.883 25 H 0.082 0.918 26 C 0.111 3.889 27 N -0.524 5.524 28 H 0.425 0.575 29 H 0.165 0.835 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.023 0.977 35 H 0.025 0.975 36 H 0.252 0.748 37 H 0.021 0.979 38 H 0.096 0.904 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.660 -8.182 -1.920 16.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.033 4.033 3 C -0.074 4.074 4 C -0.113 4.113 5 C -0.222 4.222 6 C 0.385 3.615 7 O -0.406 6.406 8 N -0.335 5.335 9 C -0.028 4.028 10 C -0.162 4.162 11 C -0.130 4.130 12 H 0.105 0.895 13 C 0.019 3.981 14 N -0.330 5.330 15 C -0.359 4.359 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.559 5.559 19 Si 0.742 3.258 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.041 3.959 24 C 0.013 3.987 25 H 0.100 0.900 26 C -0.031 4.031 27 N -0.118 5.118 28 H 0.264 0.736 29 H 0.183 0.817 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.040 0.960 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.114 0.886 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -15.743 -8.609 -1.472 18.004 hybrid contribution 0.915 0.241 0.673 1.161 sum -14.828 -8.368 -0.799 17.046 Atomic orbital electron populations 1.81323 1.11284 1.07911 1.08275 1.24338 0.90844 0.94129 0.94008 1.15210 0.83170 1.03306 1.05681 1.21786 0.91251 0.98811 0.99497 1.19671 0.93193 1.03665 1.05717 1.16866 0.87357 0.79151 0.78094 1.90852 1.27580 1.62677 1.59537 1.48258 1.09577 1.29058 1.46630 1.22668 0.87634 0.92466 1.00069 1.22874 0.96918 0.95665 1.00769 1.22876 0.95549 0.96155 0.98383 0.89485 1.20970 0.90480 0.94218 0.92436 1.44196 1.30084 1.20921 1.37755 1.19059 1.02199 1.01046 1.13571 0.90403 1.24844 0.99486 0.97489 0.98613 1.69950 1.39679 1.19988 1.26305 0.86056 0.82458 0.79099 0.78198 1.20571 1.21834 1.21756 1.21656 0.96838 0.86549 0.90835 1.22958 0.88350 0.92952 0.94425 0.89980 1.22437 0.85692 0.97422 0.97521 1.41600 1.05753 1.30688 1.33774 0.73625 0.81733 0.91631 0.90308 0.89875 0.90453 0.95955 0.95754 0.93745 0.96100 0.88594 0.78916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.81 18.54 41.84 0.78 -4.03 16 2 C 0.28 2.73 15.88 -22.47 -0.36 2.37 16 3 C 0.04 0.33 6.90 -83.98 -0.58 -0.25 16 4 C -0.09 -0.85 8.99 -39.04 -0.35 -1.20 16 5 C -0.21 -2.65 6.05 -105.01 -0.64 -3.29 16 6 C 0.60 10.31 7.68 -12.54 -0.10 10.21 16 7 O -0.53 -11.40 16.91 5.27 0.09 -11.31 16 8 N -0.60 -10.00 2.85 -162.81 -0.46 -10.46 16 9 C 0.09 1.16 5.09 -2.44 -0.01 1.15 16 10 C -0.12 -1.67 6.25 -24.64 -0.15 -1.82 16 11 C -0.11 -1.78 3.91 -88.33 -0.35 -2.12 16 12 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 13 C 0.15 2.92 6.65 -3.86 -0.03 2.89 16 14 N -0.60 -15.48 3.37 -172.22 -0.58 -16.06 16 15 C -0.23 -6.47 10.25 -15.06 -0.15 -6.63 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 18 N -0.91 -27.55 10.17 55.49 0.56 -26.99 16 19 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 23 C 0.17 4.18 4.68 -3.38 -0.02 4.17 16 24 C 0.12 2.26 3.91 -65.74 -0.26 2.00 16 25 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 26 C 0.11 1.03 11.73 -16.46 -0.19 0.84 16 27 N -0.52 -3.58 6.02 -10.29 -0.06 -3.64 16 28 H 0.43 1.45 8.96 -40.82 -0.37 1.08 16 29 H 0.17 1.40 4.91 -52.48 -0.26 1.14 16 30 H 0.07 0.64 7.71 -51.93 -0.40 0.24 16 31 H 0.08 0.86 5.94 -51.93 -0.31 0.55 16 32 H 0.08 1.32 7.88 -51.93 -0.41 0.91 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 36 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.02 0.58 7.94 -51.93 -0.41 0.17 16 38 H 0.10 2.84 6.22 -51.93 -0.32 2.51 16 39 H 0.19 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 326.25 15.07 4.92 4.92 Total: -1.00 -35.58 326.25 -7.60 -43.17 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -4.54 Total: -0.95 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -3.27 Total: 8.00 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 0.23 Total: -61.18 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.58 -7.60 -43.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075698788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.355 kcal (2) G-P(sol) polarization free energy of solvation -35.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds