Wall clock time and date at job start Tue Mar 31 2020 03:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.36359 * 125.84492 * 137.14507 * 3 2 1 5 5 C 1.41429 * 107.01627 * 180.22693 * 4 3 2 6 6 C 1.47378 * 126.46721 * 179.79201 * 5 4 3 7 7 O 1.21611 * 119.99500 * 187.07250 * 6 5 4 8 8 N 1.34773 * 119.99760 * 7.07709 * 6 5 4 9 9 C 1.47348 * 125.53409 * 5.25504 * 8 6 5 10 10 C 1.55151 * 104.78557 * 156.49018 * 9 8 6 11 11 C 1.54805 * 101.40186 * 37.52405 * 10 9 8 12 12 H 1.08999 * 112.64198 * 85.17873 * 11 10 9 13 13 C 1.53271 * 109.74271 * 212.12681 * 11 10 9 14 14 N 1.46578 * 108.15665 * 95.76323 * 13 11 10 15 15 C 1.36945 * 125.30367 * 177.88547 * 14 13 11 16 16 H 1.07999 * 119.99701 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00092 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99838 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00113 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47222 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47075 * 120.00325 * 19 17 15 22 22 H 1.48506 * 109.47055 * 240.00050 * 19 17 15 23 23 C 1.46606 * 109.39332 * 357.88458 * 14 13 11 24 24 C 1.47218 * 125.52350 * 185.56943 * 8 6 5 25 25 H 1.08993 * 112.29019 * 56.20480 * 24 8 6 26 26 C 1.38119 * 107.06057 * 359.75683 * 5 4 3 27 27 N 1.34427 * 108.39309 * 359.97438 * 26 5 4 28 28 H 0.97003 * 125.38792 * 179.97438 * 27 26 5 29 29 H 1.08004 * 126.48977 * 359.97438 * 4 3 2 30 30 H 1.09003 * 110.35301 * 275.43963 * 9 8 6 31 31 H 1.08996 * 110.35180 * 37.72804 * 9 8 6 32 32 H 1.08999 * 111.20915 * 279.43798 * 10 9 8 33 33 H 1.09002 * 110.95088 * 155.49509 * 10 9 8 34 34 H 1.09004 * 109.73152 * 215.44888 * 13 11 10 35 35 H 1.08991 * 109.73805 * 336.09746 * 13 11 10 36 36 H 0.97001 * 120.00217 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.91817 * 258.45951 * 23 14 13 38 38 H 1.08996 * 109.91553 * 137.16747 * 23 14 13 39 39 H 1.08008 * 125.80434 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3661 0.8113 -0.7518 5 6 4.7049 0.4736 -0.4453 6 6 5.9162 1.0851 -1.0205 7 8 7.0107 0.6182 -0.7696 8 7 5.8108 2.1615 -1.8246 9 6 4.5649 2.8902 -2.1212 10 6 5.0274 4.3097 -2.5434 11 6 6.3132 3.9875 -3.3430 12 1 6.1089 3.7440 -4.3856 13 6 7.3242 5.1277 -3.1791 14 7 8.2488 4.7667 -2.1005 15 6 9.3172 5.5183 -1.6893 16 1 9.5320 6.4605 -2.1714 17 6 10.1234 5.0695 -0.6522 18 7 9.8612 3.9214 -0.0644 19 14 11.5803 6.0950 -0.0909 20 1 11.6583 7.3328 -0.9074 21 1 11.4104 6.4549 1.3397 22 1 12.8309 5.3120 -0.2591 23 6 7.8515 3.4758 -1.5304 24 6 6.9208 2.7962 -2.5542 25 1 7.4456 2.0934 -3.2012 26 6 4.6627 -0.5367 0.4956 27 7 3.3748 -0.8144 0.7624 28 1 3.0631 -1.4859 1.3891 29 1 3.0380 1.5653 -1.4520 30 1 4.0273 2.4058 -2.9364 31 1 3.9371 2.9453 -1.2319 32 1 5.2523 4.9263 -1.6731 33 1 4.2823 4.7897 -3.1779 34 1 7.8778 5.2651 -4.1080 35 1 6.8016 6.0491 -2.9225 36 1 10.4243 3.6080 0.6606 37 1 7.3198 3.6322 -0.5919 38 1 8.7330 2.8572 -1.3621 39 1 5.5190 -1.0213 0.9411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075698788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:56 Heat of formation + Delta-G solvation = 68.003836 kcal Electronic energy + Delta-G solvation = -24107.084532 eV Core-core repulsion = 20630.141095 eV Total energy + Delta-G solvation = -3476.943436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -42.53622 -41.13084 -38.98142 -37.55370 -36.60058 -34.15096 -32.61753 -32.05986 -30.77755 -30.16018 -28.29856 -26.48718 -24.79475 -23.61183 -22.82845 -22.12298 -21.11295 -20.59618 -19.41687 -18.82754 -17.65033 -17.18824 -16.63623 -16.39253 -16.25927 -15.90276 -15.50023 -15.36516 -14.92148 -14.79920 -14.36544 -14.15253 -14.14214 -13.91108 -13.82134 -13.66800 -13.37470 -13.13418 -13.00392 -12.87032 -12.76271 -12.48574 -12.06187 -11.81676 -11.58083 -11.38575 -11.31956 -10.86991 -10.69700 -10.16828 -9.57679 -9.28135 -8.85245 -7.73879 -5.19239 0.37538 0.84145 1.23832 1.45788 1.47886 1.58338 2.05443 2.21712 2.32881 2.51875 2.63328 3.01763 3.35754 3.49502 3.71031 3.85560 4.02483 4.11385 4.17914 4.21537 4.41526 4.46164 4.54304 4.57949 4.63946 4.79031 4.89262 4.94194 5.03421 5.19032 5.25672 5.32855 5.42730 5.51916 5.57217 5.58379 5.75540 5.90386 6.25672 6.31651 6.42040 6.79340 7.13079 7.40954 7.84231 8.44481 9.27937 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.021842 B = 0.003885 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.634135 B = 7205.388631 C = 7957.161733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.307 3.693 3 C 0.045 3.955 4 C -0.077 4.077 5 C -0.247 4.247 6 C 0.587 3.413 7 O -0.591 6.591 8 N -0.606 5.606 9 C 0.092 3.908 10 C -0.118 4.118 11 C -0.094 4.094 12 H 0.130 0.870 13 C 0.136 3.864 14 N -0.626 5.626 15 C -0.241 4.241 16 H 0.087 0.913 17 C -0.071 4.071 18 N -0.947 5.947 19 Si 0.980 3.020 20 H -0.261 1.261 21 H -0.294 1.294 22 H -0.294 1.294 23 C 0.187 3.813 24 C 0.120 3.880 25 H 0.071 0.929 26 C 0.131 3.869 27 N -0.501 5.501 28 H 0.445 0.555 29 H 0.183 0.817 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.125 0.875 34 H 0.029 0.971 35 H 0.034 0.966 36 H 0.242 0.758 37 H -0.021 1.021 38 H 0.039 0.961 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.421 -7.825 -3.145 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.008 4.008 3 C -0.067 4.067 4 C -0.105 4.105 5 C -0.256 4.256 6 C 0.379 3.621 7 O -0.473 6.473 8 N -0.338 5.338 9 C -0.029 4.029 10 C -0.155 4.155 11 C -0.113 4.113 12 H 0.148 0.852 13 C 0.011 3.989 14 N -0.353 5.353 15 C -0.370 4.370 16 H 0.105 0.895 17 C -0.264 4.264 18 N -0.596 5.596 19 Si 0.808 3.192 20 H -0.185 1.185 21 H -0.221 1.221 22 H -0.221 1.221 23 C 0.060 3.940 24 C 0.015 3.985 25 H 0.089 0.911 26 C -0.014 4.014 27 N -0.096 5.096 28 H 0.287 0.713 29 H 0.200 0.800 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.052 0.948 37 H -0.003 1.003 38 H 0.058 0.942 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -18.594 -8.229 -2.727 20.516 hybrid contribution 1.777 0.129 1.062 2.074 sum -16.817 -8.099 -1.666 18.740 Atomic orbital electron populations 1.81368 1.12234 1.09039 1.09405 1.24181 0.90551 0.93089 0.92971 1.15026 0.82709 1.03301 1.05638 1.21865 0.89870 0.99085 0.99647 1.19325 0.92269 1.05842 1.08147 1.17642 0.88153 0.78896 0.77409 1.90811 1.30211 1.64555 1.61714 1.48360 1.10280 1.29026 1.46143 1.23030 0.86033 0.91426 1.02366 1.22891 0.96510 0.96250 0.99877 1.22920 0.95398 0.92414 1.00568 0.85227 1.21256 0.90630 0.96266 0.90705 1.44525 1.30643 1.21098 1.39014 1.19516 1.02775 1.01434 1.13257 0.89527 1.25761 1.02611 0.98770 0.99270 1.70284 1.40700 1.21918 1.26714 0.84979 0.78601 0.78075 0.77500 1.18474 1.22096 1.22100 1.21156 0.95329 0.86216 0.91251 1.22606 0.88776 0.93814 0.93271 0.91103 1.22577 0.86800 0.95994 0.96022 1.41539 1.04609 1.30282 1.33179 0.71315 0.80032 0.87414 0.88622 0.93093 0.85731 0.95253 0.94758 0.94815 1.00334 0.94246 0.77692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.30 18.54 19.00 0.35 -8.95 16 2 C 0.31 5.01 15.88 88.33 1.40 6.41 16 3 C 0.04 0.64 6.90 39.03 0.27 0.91 16 4 C -0.08 -1.30 8.99 22.62 0.20 -1.10 16 5 C -0.25 -5.85 6.05 -20.11 -0.12 -5.97 16 6 C 0.59 20.82 7.68 86.65 0.67 21.49 16 7 O -0.59 -27.28 16.91 -4.07 -0.07 -27.35 16 8 N -0.61 -20.00 2.85 -787.27 -2.24 -22.24 16 9 C 0.09 1.96 5.09 86.96 0.44 2.40 16 10 C -0.12 -2.77 6.25 31.95 0.20 -2.57 16 11 C -0.09 -2.81 3.91 -9.31 -0.04 -2.85 16 12 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 13 C 0.14 5.36 6.65 86.46 0.58 5.94 16 14 N -0.63 -33.23 3.37 -698.78 -2.36 -35.59 16 15 C -0.24 -13.92 10.25 84.03 0.86 -13.05 16 16 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 17 C -0.07 -4.26 5.48 84.86 0.47 -3.79 16 18 N -0.95 -60.99 10.17 21.65 0.22 -60.77 16 19 Si 0.98 47.51 29.55 68.60 2.03 49.54 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 22 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 23 C 0.19 9.98 4.68 86.75 0.41 10.39 16 24 C 0.12 4.74 3.91 46.02 0.18 4.92 16 25 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 26 C 0.13 2.21 11.73 84.27 0.99 3.20 16 27 N -0.50 -5.37 6.02 -186.47 -1.12 -6.50 16 28 H 0.44 1.55 8.96 -92.71 -0.83 0.72 16 29 H 0.18 2.31 4.91 -2.91 -0.01 2.29 16 30 H 0.11 1.49 7.71 -2.39 -0.02 1.47 16 31 H 0.10 1.75 5.94 -2.39 -0.01 1.73 16 32 H 0.05 1.55 7.88 -2.39 -0.02 1.53 16 33 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.03 1.30 7.74 -2.39 -0.02 1.28 16 36 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 37 H -0.02 -1.28 7.94 -2.39 -0.02 -1.30 16 38 H 0.04 2.54 6.22 -2.39 -0.01 2.52 16 39 H 0.21 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -86.14 326.25 3.59 -82.55 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 0.28 Total: 3.00 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 6.50 Total: 26.32 kcal Atomic # 7 Polarization: -128.90 SS G_CDS: -5.15 Total: -134.05 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.07 Total: -27.35 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -86.14 3.59 -82.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075698788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.553 kcal (2) G-P(sol) polarization free energy of solvation -86.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds