Wall clock time and date at job start Tue Mar 31 2020 03:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.47023 * 125.64945 * 359.69059 * 9 7 2 11 11 C 1.54333 * 107.26879 * 178.84833 * 10 9 7 12 12 H 1.08998 * 110.51089 * 96.45611 * 11 10 9 13 13 O 1.42892 * 111.00601 * 219.60621 * 11 10 9 14 14 C 1.55156 * 103.01719 * 338.14792 * 11 10 9 15 15 H 1.09001 * 111.00470 * 277.22613 * 14 11 10 16 16 N 1.46505 * 111.00475 * 153.37775 * 14 11 10 17 17 C 1.34769 * 120.00146 * 161.34450 * 16 14 11 18 18 O 1.21280 * 120.00140 * 0.02562 * 17 16 14 19 19 C 1.50702 * 119.99974 * 180.02562 * 17 16 14 20 20 C 1.53006 * 109.47119 * 180.02562 * 19 17 16 21 21 O 1.42972 * 109.46894 * 295.00147 * 20 19 17 22 22 C 1.43094 * 113.76350 * 181.20556 * 21 20 19 23 23 C 1.53258 * 108.94602 * 57.97505 * 22 21 20 24 24 C 1.53265 * 108.83868 * 305.46995 * 23 22 21 25 25 O 1.42969 * 109.46934 * 175.00255 * 20 19 17 26 26 C 1.47419 * 125.64885 * 180.02562 * 9 7 2 27 27 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.88481 * 298.40177 * 10 9 7 29 29 H 1.09001 * 109.87735 * 59.56334 * 10 9 7 30 30 H 0.96699 * 114.00029 * 293.78277 * 13 11 10 31 31 H 0.97004 * 119.99898 * 341.35042 * 16 14 11 32 32 H 1.09000 * 109.47064 * 300.00256 * 19 17 16 33 33 H 1.08999 * 109.46910 * 60.00544 * 19 17 16 34 34 H 1.08997 * 109.47416 * 54.99874 * 20 19 17 35 35 H 1.08994 * 109.56339 * 298.12790 * 22 21 20 36 36 H 1.09001 * 109.55320 * 177.80850 * 22 21 20 37 37 H 1.08997 * 109.57756 * 185.66815 * 23 22 21 38 38 H 1.08997 * 109.57806 * 65.27624 * 23 22 21 39 39 H 1.09000 * 109.56012 * 294.68258 * 24 23 22 40 40 H 1.08999 * 109.55494 * 174.36637 * 24 23 22 41 41 H 1.09000 * 110.36612 * 322.93177 * 26 9 7 42 42 H 1.08999 * 110.37105 * 85.25388 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 -0.1375 -2.5327 0.0176 11 6 -0.4488 -4.0441 -0.0103 12 1 -0.6272 -4.4160 0.9986 13 8 -1.5679 -4.3211 -0.8545 14 6 0.8488 -4.6573 -0.5999 15 1 0.8486 -4.5996 -1.6884 16 7 1.0281 -6.0398 -0.1495 17 6 1.8573 -6.8645 -0.8192 18 8 2.4553 -6.4622 -1.7946 19 6 2.0413 -8.2868 -0.3562 20 6 3.0271 -9.0014 -1.2828 21 8 2.4636 -9.1000 -2.5931 22 6 3.3023 -9.7807 -3.5317 23 6 3.5987 -11.1888 -3.0043 24 6 4.1859 -11.0753 -1.5932 25 8 3.2912 -10.3125 -0.7776 26 6 1.9333 -3.7311 0.0054 27 1 -0.4849 0.8401 0.0004 28 1 -0.5464 -2.0847 0.9232 29 1 -0.5653 -2.0518 -0.8621 30 1 -2.4040 -3.9593 -0.5305 31 1 0.5500 -6.3615 0.6308 32 1 2.4320 -8.2900 0.6614 33 1 1.0816 -8.8032 -0.3785 34 1 3.9576 -8.4356 -1.3292 35 1 4.2362 -9.2318 -3.6516 36 1 2.7924 -9.8508 -4.4926 37 1 4.3169 -11.6807 -3.6602 38 1 2.6759 -11.7679 -2.9704 39 1 5.1534 -10.5754 -1.6396 40 1 4.3081 -12.0713 -1.1677 41 1 2.8302 -3.7420 -0.6140 42 1 2.1707 -4.0397 1.0235 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076922689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:40 Heat of formation + Delta-G solvation = -177.117737 kcal Electronic energy + Delta-G solvation = -25085.207312 eV Core-core repulsion = 21258.032936 eV Total energy + Delta-G solvation = -3827.174376 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.35591 -40.58065 -39.30806 -36.68752 -36.66741 -35.54311 -34.22967 -33.60236 -31.42920 -30.01919 -28.67394 -26.92560 -26.44504 -24.71499 -22.47297 -22.14327 -21.90707 -21.36871 -19.15035 -18.75248 -18.28050 -17.79511 -17.59437 -17.20464 -16.87107 -16.49778 -16.07123 -15.83989 -15.72091 -15.66248 -15.18993 -14.49854 -14.44621 -14.29970 -14.28496 -13.85623 -13.74678 -13.34491 -13.16068 -12.90334 -12.75566 -12.70326 -12.41709 -12.14317 -12.10555 -12.07459 -11.88548 -11.53381 -11.15174 -10.98772 -10.81142 -10.76341 -10.66844 -10.15228 -8.97541 -7.89222 -5.26604 1.45142 1.48924 1.54948 1.63840 1.87129 2.46556 2.66471 2.75673 3.13308 3.31605 3.54776 3.65477 3.78660 3.79167 3.83417 3.91761 4.06199 4.09399 4.21284 4.27817 4.41684 4.44991 4.45980 4.53184 4.58816 4.71725 4.82734 4.82991 4.85793 5.02897 5.11474 5.35807 5.43628 5.47370 5.65777 5.83996 6.13133 6.16100 6.55549 6.87688 7.04161 7.27199 7.68797 8.31268 9.20328 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.026826 B = 0.003019 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.518225 B = 9272.024693 C = 9790.846695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.982 3.018 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.250 4.250 8 H 0.081 0.919 9 N -0.623 5.623 10 C 0.161 3.839 11 C 0.092 3.908 12 H 0.098 0.902 13 O -0.569 6.569 14 C 0.155 3.845 15 H 0.066 0.934 16 N -0.700 5.700 17 C 0.517 3.483 18 O -0.576 6.576 19 C -0.116 4.116 20 C 0.262 3.738 21 O -0.407 6.407 22 C 0.045 3.955 23 C -0.184 4.184 24 C 0.048 3.952 25 O -0.403 6.403 26 C 0.132 3.868 27 H 0.250 0.750 28 H 0.027 0.973 29 H 0.020 0.980 30 H 0.396 0.604 31 H 0.419 0.581 32 H 0.149 0.851 33 H 0.128 0.872 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.123 0.877 41 H 0.032 0.968 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.520 -23.916 0.888 24.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.809 3.191 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.379 4.379 8 H 0.099 0.901 9 N -0.351 5.351 10 C 0.035 3.965 11 C 0.031 3.969 12 H 0.115 0.885 13 O -0.377 6.377 14 C 0.048 3.952 15 H 0.084 0.916 16 N -0.353 5.353 17 C 0.304 3.696 18 O -0.454 6.454 19 C -0.156 4.156 20 C 0.166 3.834 21 O -0.328 6.328 22 C -0.031 4.031 23 C -0.222 4.222 24 C -0.027 4.027 25 O -0.324 6.324 26 C 0.005 3.995 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.247 0.753 31 H 0.257 0.743 32 H 0.167 0.833 33 H 0.146 0.854 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.141 0.859 41 H 0.050 0.950 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.078 -23.722 -0.032 24.070 hybrid contribution 0.046 1.522 0.147 1.529 sum 4.124 -22.200 0.115 22.580 Atomic orbital electron populations 1.70124 1.06165 1.25639 1.57735 1.25666 0.96753 1.01005 1.02050 0.85115 0.77198 0.78539 0.78235 1.20667 1.21642 1.19938 1.19414 0.91019 0.83528 1.43931 0.90134 1.44520 1.02313 1.00843 1.87397 1.21632 0.84299 0.91459 0.99122 1.23139 0.85620 0.94425 0.93674 0.88481 1.86439 1.19348 1.79533 1.52378 1.21684 0.93938 0.80997 0.98568 0.91624 1.45623 1.46646 1.10351 1.32692 1.20829 0.78279 0.88030 0.82427 1.90731 1.48505 1.77969 1.28237 1.21462 1.03040 0.89818 1.01256 1.22838 0.95251 0.83789 0.81505 1.88154 1.46447 1.77499 1.20693 1.22856 0.95117 0.92161 0.92987 1.22761 1.03730 0.97401 0.98275 1.22942 0.91691 0.97509 0.90604 1.88017 1.66941 1.27615 1.49852 1.21932 0.94926 0.84610 0.98014 0.94105 0.95482 0.96196 0.75335 0.74311 0.83324 0.85420 0.93031 0.92972 0.87741 0.87111 0.90256 0.92097 0.85889 0.94998 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.65 10.31 21.65 0.22 -56.43 16 2 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 3 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.25 -14.40 10.28 84.03 0.86 -13.54 16 8 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 9 N -0.62 -32.86 3.39 -691.95 -2.35 -35.21 16 10 C 0.16 7.82 5.16 86.73 0.45 8.27 16 11 C 0.09 3.28 3.94 31.79 0.13 3.41 16 12 H 0.10 2.78 8.00 -2.39 -0.02 2.76 16 13 O -0.57 -19.07 13.40 -148.98 -2.00 -21.07 16 14 C 0.16 5.86 3.04 46.39 0.14 6.00 16 15 H 0.07 3.00 7.73 -2.39 -0.02 2.98 16 16 N -0.70 -19.49 5.23 -435.94 -2.28 -21.77 16 17 C 0.52 15.37 7.71 87.66 0.68 16.04 16 18 O -0.58 -23.01 15.17 10.75 0.16 -22.85 16 19 C -0.12 -2.38 5.78 29.85 0.17 -2.20 16 20 C 0.26 6.27 2.80 71.98 0.20 6.47 16 21 O -0.41 -11.29 9.77 -120.75 -1.18 -12.47 16 22 C 0.04 0.90 6.96 72.07 0.50 1.40 16 23 C -0.18 -2.50 6.35 30.77 0.20 -2.31 16 24 C 0.05 0.69 6.96 72.07 0.50 1.19 16 25 O -0.40 -8.25 10.54 -126.22 -1.33 -9.58 16 26 C 0.13 5.72 6.93 86.86 0.60 6.33 16 27 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.03 1.41 7.53 -2.39 -0.02 1.39 16 29 H 0.02 1.12 7.28 -2.39 -0.02 1.10 16 30 H 0.40 9.75 9.12 -74.06 -0.68 9.07 16 31 H 0.42 8.11 8.52 -92.71 -0.79 7.32 16 32 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.05 1.35 7.96 -2.39 -0.02 1.33 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -79.41 343.76 -2.25 -81.66 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -0.42 Total: 21.53 kcal Atomic # 6 Polarization: 23.11 SS G_CDS: 4.89 Total: 28.00 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -4.40 Total: -113.41 kcal Atomic # 8 Polarization: -61.63 SS G_CDS: -4.34 Total: -65.97 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -79.41 -2.25 -81.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076922689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.461 kcal (2) G-P(sol) polarization free energy of solvation -79.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds