Wall clock time and date at job start Tue Mar 31 2020 04:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00045 * 2 1 4 4 H 1.08999 * 110.91901 * 26.09991 * 3 2 1 5 5 C 1.54904 * 111.00685 * 262.19454 * 3 2 1 6 6 N 1.47420 * 104.83643 * 204.91455 * 5 3 2 7 7 C 1.36938 * 125.65332 * 204.16605 * 6 5 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 6 5 9 9 C 1.38812 * 119.99761 * 359.95531 * 7 6 5 10 10 N 1.31618 * 120.00169 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99939 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47138 * 60.00414 * 11 9 7 13 13 H 1.48500 * 109.46980 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46968 * 300.00364 * 11 9 7 15 15 C 1.47026 * 108.70145 * 24.13252 * 6 5 3 16 16 C 1.54322 * 107.27088 * 358.93906 * 15 6 5 17 17 H 1.08993 * 110.71836 * 96.34647 * 16 15 6 18 18 N 1.46496 * 110.71841 * 219.44729 * 16 15 6 19 19 C 1.34778 * 119.99925 * 273.54228 * 18 16 15 20 20 O 1.21278 * 119.99913 * 0.02562 * 19 18 16 21 21 C 1.50706 * 119.99793 * 180.02562 * 19 18 16 22 22 H 1.08999 * 109.52303 * 54.87646 * 21 19 18 23 23 C 1.53135 * 109.52346 * 294.67249 * 21 19 18 24 24 O 1.43077 * 109.14883 * 184.78841 * 23 21 19 25 25 C 1.43075 * 113.59432 * 57.95616 * 24 23 21 26 26 C 1.53147 * 109.14560 * 302.04523 * 25 24 23 27 27 O 1.43077 * 109.15352 * 55.31716 * 26 25 24 28 28 H 1.09000 * 109.47364 * 299.99896 * 1 2 3 29 29 H 1.09000 * 109.47189 * 60.00073 * 1 2 3 30 30 H 1.09004 * 109.47378 * 179.97438 * 1 2 3 31 31 H 1.09001 * 110.36866 * 86.07521 * 5 3 2 32 32 H 1.09002 * 110.46302 * 323.80518 * 5 3 2 33 33 H 0.97000 * 120.00248 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.87812 * 239.52236 * 15 6 5 35 35 H 1.09000 * 110.01200 * 118.43041 * 15 6 5 36 36 H 0.97002 * 120.00307 * 93.55303 * 18 16 15 37 37 H 1.08996 * 109.52848 * 304.69120 * 23 21 19 38 38 H 1.08998 * 109.52416 * 64.88640 * 23 21 19 39 39 H 1.09002 * 109.52456 * 182.14543 * 25 24 23 40 40 H 1.08992 * 109.52574 * 61.94674 * 25 24 23 41 41 H 1.08996 * 109.52869 * 295.40908 * 26 25 24 42 42 H 1.09008 * 109.51765 * 175.21152 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3332 2.0329 0.4479 5 6 2.4154 1.7329 -1.4327 6 7 3.4908 2.7229 -1.2413 7 6 3.8421 3.7021 -2.1318 8 1 4.6479 4.3818 -1.8971 9 6 3.1627 3.8207 -3.3365 10 7 2.1806 2.9925 -3.6225 11 14 3.6413 5.1569 -4.5511 12 1 5.0586 4.9740 -4.9550 13 1 2.7694 5.0713 -5.7501 14 1 3.4762 6.4877 -3.9133 15 6 4.1233 2.4854 0.0646 16 6 3.3824 1.3033 0.7243 17 1 3.9135 0.3682 0.5470 18 7 3.2108 1.5357 2.1604 19 6 4.1855 1.1821 3.0215 20 8 5.2049 0.6720 2.6073 21 6 4.0087 1.4207 4.4990 22 1 3.0848 0.9508 4.8359 23 6 3.9474 2.9265 4.7705 24 8 3.8921 3.1469 6.1832 25 6 5.0003 2.5866 6.8939 26 6 5.0616 1.0806 6.6223 27 8 5.1169 0.8603 5.2097 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.5686 2.1873 -1.9469 32 1 2.7847 0.8758 -1.9959 33 1 1.7056 3.0756 -4.4642 34 1 4.0315 3.3748 0.6881 35 1 5.1753 2.2346 -0.0706 36 1 2.3956 1.9439 2.4918 37 1 4.8361 3.4070 4.3614 38 1 3.0571 3.3453 4.3014 39 1 4.8724 2.7591 7.9626 40 1 5.9243 3.0556 6.5562 41 1 4.1729 0.6001 7.0314 42 1 5.9520 0.6619 7.0915 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081384153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:32 Heat of formation + Delta-G solvation = -126.398839 kcal Electronic energy + Delta-G solvation = -25516.545212 eV Core-core repulsion = 21691.570173 eV Total energy + Delta-G solvation = -3824.975040 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.63001 -39.27691 -38.00448 -36.29290 -35.89813 -34.14890 -32.34460 -31.47475 -29.05605 -28.34170 -27.00586 -26.11198 -25.27476 -24.18203 -22.19680 -20.88614 -20.59701 -19.84783 -17.92064 -17.27141 -16.92109 -16.84503 -16.29410 -16.18003 -15.65966 -15.41301 -15.02094 -14.67047 -14.43338 -14.32917 -14.01638 -13.69646 -13.41410 -13.20469 -12.80066 -12.57653 -12.25955 -11.98857 -11.84659 -11.50654 -11.30078 -11.13030 -11.05559 -10.88608 -10.83121 -10.79637 -10.24296 -9.95090 -9.84489 -9.75969 -9.47130 -9.11817 -8.75239 -8.71774 -6.92719 -5.71692 -3.14877 2.59995 2.71868 3.35258 3.38422 3.42795 3.43978 3.75730 4.08055 4.21756 4.46053 4.57977 4.59090 4.67096 4.78793 4.89805 5.11848 5.15459 5.27027 5.38414 5.40415 5.45578 5.45910 5.57125 5.64471 5.65142 5.79400 5.91614 6.03351 6.16551 6.40027 6.57653 6.60591 6.65747 6.84694 7.22398 7.51054 7.57566 7.69847 7.76431 8.23241 8.29059 9.13754 9.74077 10.36289 11.32101 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.018371 B = 0.003773 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.794572 B = 7420.277512 C = 8334.376994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.055 3.945 4 H 0.068 0.932 5 C 0.142 3.858 6 N -0.600 5.600 7 C -0.224 4.224 8 H 0.080 0.920 9 C -0.009 4.009 10 N -0.923 5.923 11 Si 0.918 3.082 12 H -0.284 1.284 13 H -0.289 1.289 14 H -0.285 1.285 15 C 0.130 3.870 16 C 0.137 3.863 17 H 0.103 0.897 18 N -0.712 5.712 19 C 0.521 3.479 20 O -0.512 6.512 21 C 0.039 3.961 22 H 0.093 0.907 23 C 0.037 3.963 24 O -0.374 6.374 25 C 0.020 3.980 26 C 0.023 3.977 27 O -0.349 6.349 28 H 0.033 0.967 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.027 0.973 33 H 0.254 0.746 34 H 0.030 0.970 35 H 0.035 0.965 36 H 0.397 0.603 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 -2.464 19.406 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C -0.004 4.004 4 H 0.086 0.914 5 C 0.016 3.984 6 N -0.328 5.328 7 C -0.352 4.352 8 H 0.098 0.902 9 C -0.205 4.205 10 N -0.571 5.571 11 Si 0.748 3.252 12 H -0.211 1.211 13 H -0.215 1.215 14 H -0.211 1.211 15 C 0.003 3.997 16 C 0.032 3.968 17 H 0.121 0.879 18 N -0.365 5.365 19 C 0.304 3.696 20 O -0.385 6.385 21 C -0.023 4.023 22 H 0.111 0.889 23 C -0.041 4.041 24 O -0.293 6.293 25 C -0.057 4.057 26 C -0.054 4.054 27 O -0.267 6.267 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.131 0.869 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.231 0.769 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.125 0.875 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.424 -2.946 18.886 19.167 hybrid contribution -0.331 0.991 -0.376 1.110 sum -1.756 -1.955 18.510 18.695 Atomic orbital electron populations 1.22713 0.81570 1.01997 0.99929 1.87857 1.19232 1.27686 1.95076 1.24040 0.92468 0.83803 1.00097 0.91375 1.22299 0.94681 0.92076 0.89355 1.44292 1.37305 1.35415 1.15782 1.19052 1.14019 1.06111 0.96049 0.90226 1.24800 0.98500 0.99325 0.97837 1.69734 1.24562 1.38636 1.24213 0.86106 0.77706 0.81000 0.80409 1.21085 1.21521 1.21107 1.21602 0.95935 0.93933 0.88195 1.22219 0.97016 1.00309 0.77230 0.87946 1.45929 1.19861 1.63342 1.07336 1.19829 0.84002 0.79051 0.86678 1.90749 1.27614 1.41540 1.78644 1.22594 0.92050 0.95725 0.91927 0.88912 1.23169 1.04624 0.93540 0.82734 1.88114 1.45504 1.77364 1.18273 1.23321 0.90557 0.93686 0.98115 1.23342 1.03710 0.96060 0.82279 1.88254 1.43597 1.76839 1.18049 0.94800 0.93489 0.90271 0.86926 0.95467 0.93521 0.95247 0.94754 0.76863 0.91045 0.86925 0.87499 0.91722 0.91906 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.85 101.05 1.10 1.57 16 2 O -0.38 -6.79 10.51 -35.23 -0.37 -7.16 16 3 C 0.06 1.03 3.15 -24.58 -0.08 0.96 16 4 H 0.07 1.16 7.69 -51.93 -0.40 0.76 16 5 C 0.14 3.39 5.62 -2.53 -0.01 3.38 16 6 N -0.60 -15.24 3.39 -170.08 -0.58 -15.82 16 7 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 10 N -0.92 -26.29 10.09 55.49 0.56 -25.73 16 11 Si 0.92 21.76 29.55 -169.99 -5.02 16.73 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.13 2.80 6.99 -3.06 -0.02 2.78 16 16 C 0.14 2.53 2.97 -66.09 -0.20 2.34 16 17 H 0.10 2.12 7.69 -51.93 -0.40 1.72 16 18 N -0.71 -10.32 5.10 -52.03 -0.27 -10.58 16 19 C 0.52 8.09 7.18 -10.98 -0.08 8.01 16 20 O -0.51 -10.35 16.24 -14.25 -0.23 -10.58 16 21 C 0.04 0.47 3.25 -27.81 -0.09 0.37 16 22 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 23 C 0.04 0.38 6.29 37.23 0.23 0.62 16 24 O -0.37 -3.89 10.85 -48.80 -0.53 -4.42 16 25 C 0.02 0.16 7.05 37.23 0.26 0.43 16 26 C 0.02 0.20 7.05 37.23 0.26 0.46 16 27 O -0.35 -4.65 10.03 -62.50 -0.63 -5.27 16 28 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.11 2.97 5.87 -51.93 -0.30 2.66 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.40 4.43 8.45 -40.82 -0.34 4.09 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.11 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.11 0.73 8.14 -51.92 -0.42 0.30 16 LS Contribution 344.75 15.07 5.20 5.20 Total: -1.00 -33.98 344.75 -7.22 -41.20 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.48 Total: 2.21 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 1.13 Total: 14.23 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.28 Total: -52.13 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -1.76 Total: -27.44 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.98 -7.22 -41.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081384153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.195 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds