Wall clock time and date at job start Tue Mar 31 2020 04:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00045 * 2 1 4 4 H 1.08999 * 110.91901 * 26.09991 * 3 2 1 5 5 C 1.54904 * 111.00685 * 262.19454 * 3 2 1 6 6 N 1.47420 * 104.83643 * 204.91455 * 5 3 2 7 7 C 1.36938 * 125.65332 * 204.16605 * 6 5 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 6 5 9 9 C 1.38812 * 119.99761 * 359.95531 * 7 6 5 10 10 N 1.31618 * 120.00169 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99939 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47138 * 60.00414 * 11 9 7 13 13 H 1.48500 * 109.46980 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46968 * 300.00364 * 11 9 7 15 15 C 1.47026 * 108.70145 * 24.13252 * 6 5 3 16 16 C 1.54322 * 107.27088 * 358.93906 * 15 6 5 17 17 H 1.08993 * 110.71836 * 96.34647 * 16 15 6 18 18 N 1.46496 * 110.71841 * 219.44729 * 16 15 6 19 19 C 1.34778 * 119.99925 * 273.54228 * 18 16 15 20 20 O 1.21278 * 119.99913 * 0.02562 * 19 18 16 21 21 C 1.50706 * 119.99793 * 180.02562 * 19 18 16 22 22 H 1.08999 * 109.52303 * 54.87646 * 21 19 18 23 23 C 1.53135 * 109.52346 * 294.67249 * 21 19 18 24 24 O 1.43077 * 109.14883 * 184.78841 * 23 21 19 25 25 C 1.43075 * 113.59432 * 57.95616 * 24 23 21 26 26 C 1.53147 * 109.14560 * 302.04523 * 25 24 23 27 27 O 1.43077 * 109.15352 * 55.31716 * 26 25 24 28 28 H 1.09000 * 109.47364 * 299.99896 * 1 2 3 29 29 H 1.09000 * 109.47189 * 60.00073 * 1 2 3 30 30 H 1.09004 * 109.47378 * 179.97438 * 1 2 3 31 31 H 1.09001 * 110.36866 * 86.07521 * 5 3 2 32 32 H 1.09002 * 110.46302 * 323.80518 * 5 3 2 33 33 H 0.97000 * 120.00248 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.87812 * 239.52236 * 15 6 5 35 35 H 1.09000 * 110.01200 * 118.43041 * 15 6 5 36 36 H 0.97002 * 120.00307 * 93.55303 * 18 16 15 37 37 H 1.08996 * 109.52848 * 304.69120 * 23 21 19 38 38 H 1.08998 * 109.52416 * 64.88640 * 23 21 19 39 39 H 1.09002 * 109.52456 * 182.14543 * 25 24 23 40 40 H 1.08992 * 109.52574 * 61.94674 * 25 24 23 41 41 H 1.08996 * 109.52869 * 295.40908 * 26 25 24 42 42 H 1.09008 * 109.51765 * 175.21152 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3332 2.0329 0.4479 5 6 2.4154 1.7329 -1.4327 6 7 3.4908 2.7229 -1.2413 7 6 3.8421 3.7021 -2.1318 8 1 4.6479 4.3818 -1.8971 9 6 3.1627 3.8207 -3.3365 10 7 2.1806 2.9925 -3.6225 11 14 3.6413 5.1569 -4.5511 12 1 5.0586 4.9740 -4.9550 13 1 2.7694 5.0713 -5.7501 14 1 3.4762 6.4877 -3.9133 15 6 4.1233 2.4854 0.0646 16 6 3.3824 1.3033 0.7243 17 1 3.9135 0.3682 0.5470 18 7 3.2108 1.5357 2.1604 19 6 4.1855 1.1821 3.0215 20 8 5.2049 0.6720 2.6073 21 6 4.0087 1.4207 4.4990 22 1 3.0848 0.9508 4.8359 23 6 3.9474 2.9265 4.7705 24 8 3.8921 3.1469 6.1832 25 6 5.0003 2.5866 6.8939 26 6 5.0616 1.0806 6.6223 27 8 5.1169 0.8603 5.2097 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.5686 2.1873 -1.9469 32 1 2.7847 0.8758 -1.9959 33 1 1.7056 3.0756 -4.4642 34 1 4.0315 3.3748 0.6881 35 1 5.1753 2.2346 -0.0706 36 1 2.3956 1.9439 2.4918 37 1 4.8361 3.4070 4.3614 38 1 3.0571 3.3453 4.3014 39 1 4.8724 2.7591 7.9626 40 1 5.9243 3.0556 6.5562 41 1 4.1729 0.6001 7.0314 42 1 5.9520 0.6619 7.0915 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081384153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:32 Heat of formation + Delta-G solvation = -152.884194 kcal Electronic energy + Delta-G solvation = -25517.693703 eV Core-core repulsion = 21691.570173 eV Total energy + Delta-G solvation = -3826.123531 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.67048 -40.50311 -39.40040 -37.53929 -37.07363 -35.70371 -33.89973 -32.68771 -30.62524 -29.47092 -28.52018 -27.48977 -26.35656 -25.71849 -23.14367 -22.44327 -22.02198 -21.34177 -19.30761 -18.64489 -18.24418 -17.85822 -17.40565 -17.21710 -16.93287 -16.52407 -16.31619 -16.02865 -15.81350 -15.68434 -15.31687 -15.05860 -14.76758 -14.46795 -14.18285 -13.92055 -13.72624 -13.29244 -13.18030 -13.02042 -12.70117 -12.65029 -12.55915 -12.34343 -12.09355 -11.92583 -11.89261 -11.65141 -11.58699 -10.96624 -10.78819 -10.59424 -10.28153 -10.19352 -8.97598 -7.80756 -5.28100 1.38869 1.47904 1.51181 1.57029 1.61530 2.44984 2.63057 2.72879 2.85641 3.30151 3.38423 3.51968 3.59512 3.82840 3.84341 3.94984 3.96224 4.04622 4.14253 4.24893 4.34875 4.46219 4.48811 4.55062 4.61912 4.67542 4.78973 4.80986 4.83327 4.88558 4.90305 5.27299 5.36860 5.44593 5.68473 5.85021 5.87147 6.19144 6.31341 6.41420 7.04340 7.09287 7.69114 8.31302 9.20451 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.018371 B = 0.003773 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.794572 B = 7420.277512 C = 8334.376994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.079 3.921 4 H 0.096 0.904 5 C 0.146 3.854 6 N -0.618 5.618 7 C -0.246 4.246 8 H 0.082 0.918 9 C -0.059 4.059 10 N -0.946 5.946 11 Si 0.984 3.016 12 H -0.282 1.282 13 H -0.291 1.291 14 H -0.272 1.272 15 C 0.131 3.869 16 C 0.153 3.847 17 H 0.077 0.923 18 N -0.694 5.694 19 C 0.521 3.479 20 O -0.565 6.565 21 C 0.048 3.952 22 H 0.123 0.877 23 C 0.041 3.959 24 O -0.381 6.381 25 C 0.016 3.984 26 C 0.019 3.981 27 O -0.386 6.386 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.102 0.898 31 H 0.089 0.911 32 H -0.013 1.013 33 H 0.250 0.750 34 H 0.045 0.955 35 H 0.013 0.987 36 H 0.419 0.581 37 H 0.056 0.944 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.469 -1.663 21.778 22.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C 0.020 3.980 4 H 0.114 0.886 5 C 0.020 3.980 6 N -0.346 5.346 7 C -0.375 4.375 8 H 0.100 0.900 9 C -0.252 4.252 10 N -0.595 5.595 11 Si 0.811 3.189 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.198 1.198 15 C 0.005 3.995 16 C 0.047 3.953 17 H 0.096 0.904 18 N -0.348 5.348 19 C 0.307 3.693 20 O -0.443 6.443 21 C -0.014 4.014 22 H 0.140 0.860 23 C -0.037 4.037 24 O -0.299 6.299 25 C -0.060 4.060 26 C -0.057 4.057 27 O -0.305 6.305 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.005 0.995 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.257 0.743 37 H 0.074 0.926 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.687 -2.132 21.317 21.591 hybrid contribution 0.079 0.678 -1.070 1.269 sum -2.608 -1.454 20.247 20.466 Atomic orbital electron populations 1.23005 0.79160 1.03945 1.00873 1.87849 1.21866 1.26839 1.94949 1.23608 0.92994 0.85034 0.96383 0.88602 1.22069 0.93301 0.90221 0.92454 1.44535 1.38105 1.35143 1.16809 1.19417 1.14270 1.06759 0.97005 0.89993 1.25634 0.98607 1.01525 0.99472 1.69975 1.25312 1.39973 1.24275 0.85086 0.77125 0.78764 0.77920 1.20877 1.21692 1.19800 1.21666 0.94963 0.95690 0.87213 1.21683 0.96262 0.97848 0.79498 0.90441 1.45639 1.20761 1.63039 1.05376 1.20559 0.82919 0.77515 0.88348 1.90729 1.29788 1.43938 1.79799 1.22573 0.92877 0.97065 0.88836 0.86010 1.23171 1.05083 0.92199 0.83242 1.88111 1.46329 1.77530 1.17959 1.23523 0.89831 0.93145 0.99523 1.23621 1.05379 0.96709 0.80028 1.88205 1.44401 1.77402 1.20504 0.91751 0.94560 0.87964 0.89312 0.99461 0.94001 0.93667 0.96885 0.74344 0.92568 0.84641 0.84516 0.92282 0.90340 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.85 113.37 1.23 1.88 16 2 O -0.40 -13.76 10.51 -148.98 -1.57 -15.33 16 3 C 0.08 2.92 3.15 31.99 0.10 3.02 16 4 H 0.10 3.01 7.69 -2.39 -0.02 2.99 16 5 C 0.15 7.20 5.62 86.85 0.49 7.69 16 6 N -0.62 -32.19 3.39 -692.00 -2.35 -34.54 16 7 C -0.25 -13.80 10.27 84.03 0.86 -12.94 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 10 N -0.95 -55.26 10.09 21.65 0.22 -55.05 16 11 Si 0.98 45.05 29.55 68.60 2.03 47.08 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 C 0.13 5.73 6.99 86.73 0.61 6.34 16 16 C 0.15 5.67 2.97 46.18 0.14 5.81 16 17 H 0.08 3.31 7.69 -2.39 -0.02 3.29 16 18 N -0.69 -18.97 5.10 -436.92 -2.23 -21.20 16 19 C 0.52 15.68 7.18 87.66 0.63 16.31 16 20 O -0.57 -23.26 16.24 15.92 0.26 -23.00 16 21 C 0.05 1.04 3.25 29.90 0.10 1.14 16 22 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 23 C 0.04 0.75 6.29 72.03 0.45 1.20 16 24 O -0.38 -6.81 10.85 -136.01 -1.48 -8.28 16 25 C 0.02 0.22 7.05 72.03 0.51 0.73 16 26 C 0.02 0.28 7.05 72.03 0.51 0.78 16 27 O -0.39 -9.72 10.03 -122.90 -1.23 -10.95 16 28 H 0.06 1.25 8.12 -2.39 -0.02 1.23 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.09 4.83 5.87 -2.39 -0.01 4.82 16 32 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 33 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 34 H 0.05 1.83 8.03 -2.39 -0.02 1.81 16 35 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.42 7.95 8.45 -92.71 -0.78 7.16 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.14 1.81 8.08 -2.39 -0.02 1.79 16 39 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -76.91 344.75 -0.02 -76.93 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.24 Total: 15.25 kcal Atomic # 6 Polarization: 23.00 SS G_CDS: 6.09 Total: 29.09 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -4.36 Total: -110.78 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -4.02 Total: -57.56 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -76.91 -0.02 -76.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081384153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.957 kcal (2) G-P(sol) polarization free energy of solvation -76.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds