Wall clock time and date at job start Tue Mar 31 2020 03:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.54450 * 112.29927 * 2 1 4 4 N 1.48338 * 104.32555 * 96.99157 * 3 2 1 5 5 C 1.36934 * 128.20165 * 221.77570 * 4 3 2 6 6 H 1.08001 * 119.99568 * 18.16484 * 5 4 3 7 7 C 1.38807 * 119.99956 * 198.16651 * 5 4 3 8 8 N 1.31621 * 119.99638 * 199.25651 * 7 5 4 9 9 Si 1.86792 * 120.00153 * 18.98426 * 7 5 4 10 10 H 1.48502 * 109.47091 * 267.02954 * 9 7 5 11 11 H 1.48506 * 109.47238 * 27.03074 * 9 7 5 12 12 H 1.48508 * 109.47212 * 147.02848 * 9 7 5 13 13 C 1.48331 * 103.60000 * 42.02952 * 4 3 2 14 14 C 1.54820 * 104.14492 * 317.93866 * 13 4 3 15 15 H 1.08994 * 112.45279 * 263.19651 * 14 13 4 16 16 C 1.53748 * 109.36293 * 137.74277 * 14 13 4 17 17 N 1.47193 * 106.42620 * 229.34350 * 16 14 13 18 18 C 1.34778 * 126.70571 * 211.36761 * 17 16 14 19 19 O 1.21281 * 120.00109 * 180.02562 * 18 17 16 20 20 C 1.50699 * 119.99852 * 0.03193 * 18 17 16 21 21 H 1.09003 * 115.55148 * 325.66484 * 20 18 17 22 22 C 1.52995 * 117.49920 * 111.37444 * 20 18 17 23 23 C 1.52995 * 60.00315 * 107.49041 * 22 20 18 24 24 F 1.39904 * 117.49929 * 252.51499 * 23 22 20 25 25 F 1.39895 * 117.52297 * 107.48116 * 23 22 20 26 26 C 1.47635 * 106.36625 * 31.85593 * 17 16 14 27 27 H 1.09008 * 109.47623 * 61.00982 * 1 2 3 28 28 H 1.09003 * 109.47656 * 181.01523 * 1 2 3 29 29 H 1.09003 * 109.47200 * 301.01527 * 1 2 3 30 30 H 1.08998 * 110.46668 * 338.27634 * 3 2 1 31 31 H 1.08999 * 110.57235 * 215.75102 * 3 2 1 32 32 H 0.97001 * 120.00252 * 355.03041 * 8 7 5 33 33 H 1.08997 * 110.46376 * 76.68000 * 13 4 3 34 34 H 1.09002 * 110.46711 * 199.26081 * 13 4 3 35 35 H 1.08998 * 110.06813 * 348.58580 * 16 14 13 36 36 H 1.09000 * 110.06372 * 110.05198 * 16 14 13 37 37 H 1.09002 * 117.49945 * 214.97645 * 22 20 18 38 38 H 1.08999 * 117.50228 * 359.97438 * 22 20 18 39 39 H 1.08997 * 109.48546 * 209.02440 * 26 17 16 40 40 H 1.09004 * 110.86056 * 87.37300 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1160 1.4290 0.0000 4 7 2.4171 1.7022 1.4266 5 6 2.2033 2.8567 2.1312 6 1 1.5146 3.5989 1.7554 7 6 2.8719 3.0731 3.3282 8 7 2.4148 3.9605 4.1861 9 14 4.4159 2.0996 3.7249 10 1 4.0517 0.8907 4.5067 11 1 5.0813 1.6904 2.4619 12 1 5.3424 2.9438 4.5215 13 6 3.0105 0.4306 1.9075 14 6 2.1220 -0.6660 1.2711 15 1 1.3493 -1.0227 1.9519 16 6 3.0131 -1.8063 0.7519 17 7 2.5821 -2.0754 -0.6295 18 6 2.6114 -3.2632 -1.2656 19 8 2.2243 -3.3470 -2.4119 20 6 3.1249 -4.4874 -0.5524 21 1 3.9373 -4.3141 0.1535 22 6 2.1126 -5.5823 -0.2102 23 6 3.1326 -5.8060 -1.3284 24 9 2.6623 -5.7829 -2.6458 25 9 4.1817 -6.6969 -1.0778 26 6 2.1238 -0.7849 -1.1811 27 1 -0.3634 0.4981 -0.8989 28 1 -0.3634 -1.0275 0.0182 29 1 -0.3634 0.5295 0.8808 30 1 1.3829 2.1416 -0.3780 31 1 3.0275 1.4691 -0.5962 32 1 1.6535 4.5141 3.9520 33 1 4.0404 0.3366 1.5635 34 1 2.9646 0.3760 2.9952 35 1 4.0588 -1.4990 0.7642 36 1 2.8779 -2.6961 1.3667 37 1 2.2588 -6.1296 0.7211 38 1 1.0751 -5.4172 -0.5005 39 1 1.3568 -0.9635 -1.9348 40 1 2.9556 -0.2318 -1.6173 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091652911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:59 Heat of formation + Delta-G solvation = -82.555780 kcal Electronic energy + Delta-G solvation = -25262.963117 eV Core-core repulsion = 21328.801739 eV Total energy + Delta-G solvation = -3934.161378 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.69463 -48.37241 -41.72224 -40.06104 -36.86089 -36.56152 -34.57166 -33.01288 -31.62011 -28.40222 -27.69048 -26.94141 -25.02151 -23.60534 -23.23648 -22.52356 -20.60216 -20.09192 -19.32381 -19.10061 -17.78152 -17.67416 -17.19939 -16.96789 -16.49597 -16.19793 -15.89872 -15.69503 -15.18869 -15.09864 -15.00300 -14.67806 -14.55258 -14.41113 -14.21359 -13.82083 -13.69196 -13.29686 -13.16380 -12.94659 -12.71157 -12.63339 -12.29176 -12.12018 -11.94054 -11.65835 -11.63440 -11.32679 -11.23077 -11.13257 -10.94151 -10.71204 -9.81065 -9.17471 -8.56902 -5.45957 1.15190 1.42734 1.58899 1.61996 1.73989 2.01929 2.26320 2.57428 3.05783 3.11419 3.20254 3.27737 3.42789 3.53174 3.67449 3.84255 3.84755 4.09512 4.18528 4.23891 4.39175 4.45785 4.57641 4.62909 4.67374 4.70942 4.77434 4.78802 4.83472 4.90330 4.96029 5.08089 5.14832 5.22234 5.27486 5.38784 5.60509 6.10663 6.41084 6.82171 6.95091 7.44060 8.21221 8.89815 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.025938 B = 0.003905 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.231722 B = 7167.960122 C = 7836.409671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.077 4.077 3 C 0.133 3.867 4 N -0.628 5.628 5 C -0.304 4.304 6 H 0.038 0.962 7 C -0.079 4.079 8 N -0.964 5.964 9 Si 1.105 2.895 10 H -0.266 1.266 11 H -0.256 1.256 12 H -0.313 1.313 13 C 0.105 3.895 14 C -0.100 4.100 15 H 0.099 0.901 16 C 0.105 3.895 17 N -0.605 5.605 18 C 0.555 3.445 19 O -0.570 6.570 20 C -0.190 4.190 21 H 0.180 0.820 22 C -0.112 4.112 23 C 0.199 3.801 24 F -0.166 7.166 25 F -0.160 7.160 26 C 0.122 3.878 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.246 0.754 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.174 0.826 38 H 0.129 0.871 39 H 0.075 0.925 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 -21.648 -7.116 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.079 4.079 3 C 0.007 3.993 4 N -0.353 5.353 5 C -0.432 4.432 6 H 0.056 0.944 7 C -0.272 4.272 8 N -0.608 5.608 9 Si 0.930 3.070 10 H -0.192 1.192 11 H -0.180 1.180 12 H -0.242 1.242 13 C -0.020 4.020 14 C -0.121 4.121 15 H 0.118 0.882 16 C -0.017 4.017 17 N -0.336 5.336 18 C 0.344 3.656 19 O -0.449 6.449 20 C -0.212 4.212 21 H 0.197 0.803 22 C -0.149 4.149 23 C 0.161 3.839 24 F -0.146 7.146 25 F -0.140 7.140 26 C -0.001 4.001 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.135 0.865 37 H 0.191 0.809 38 H 0.148 0.852 39 H 0.094 0.906 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.124 -21.929 -6.615 23.003 hybrid contribution -1.292 1.353 -1.403 2.339 sum 0.831 -20.576 -8.018 22.098 Atomic orbital electron populations 1.21526 0.92401 1.01746 1.01543 1.22200 0.96459 0.95071 0.94182 1.22056 0.97356 0.94038 0.85813 1.45470 1.73599 1.09470 1.06784 1.19903 1.20887 0.96840 1.05584 0.94441 1.27299 1.05056 1.01673 0.93178 1.71023 1.28198 1.26994 1.34580 0.83325 0.72957 0.74310 0.76421 1.19241 1.18005 1.24160 1.22564 0.95958 0.85276 0.98212 1.23044 0.98043 0.94462 0.96533 0.88230 1.22425 0.98655 0.99390 0.81218 1.48575 1.62758 1.07102 1.15206 1.19360 0.77922 0.82913 0.85442 1.90782 1.49776 1.85385 1.18990 1.23692 1.06348 0.88092 1.03059 0.80265 1.24495 0.96713 0.94921 0.98813 1.19934 0.91299 0.92796 0.79832 1.93069 1.87862 1.96608 1.37082 1.93039 1.58369 1.68984 1.93616 1.22148 0.99266 0.82965 0.95672 0.92090 0.91533 0.93831 0.93905 0.94109 0.94480 0.92815 0.92789 0.89609 0.86491 0.80873 0.85235 0.90629 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.05 8.61 71.98 0.62 -2.43 16 2 C -0.08 -2.13 1.08 -50.67 -0.05 -2.18 16 3 C 0.13 4.76 6.37 86.52 0.55 5.32 16 4 N -0.63 -27.95 3.18 -686.21 -2.19 -30.13 16 5 C -0.30 -16.89 10.64 84.03 0.89 -15.99 16 6 H 0.04 2.31 8.06 -2.91 -0.02 2.28 16 7 C -0.08 -4.53 5.48 84.86 0.46 -4.06 16 8 N -0.96 -60.60 13.70 21.65 0.30 -60.30 16 9 Si 1.10 49.88 24.95 68.60 1.71 51.60 16 10 H -0.27 -10.74 6.70 99.48 0.67 -10.08 16 11 H -0.26 -10.24 6.00 99.48 0.60 -9.64 16 12 H -0.31 -14.76 7.11 99.48 0.71 -14.06 16 13 C 0.10 3.70 4.25 86.65 0.37 4.07 16 14 C -0.10 -2.62 3.73 -9.15 -0.03 -2.66 16 15 H 0.10 2.50 7.93 -2.39 -0.02 2.48 16 16 C 0.11 1.94 6.22 86.50 0.54 2.47 16 17 N -0.60 -13.29 3.33 -814.24 -2.71 -16.00 16 18 C 0.55 12.94 7.67 87.66 0.67 13.61 16 19 O -0.57 -18.30 15.38 -3.03 -0.05 -18.35 16 20 C -0.19 -2.83 5.23 -11.54 -0.06 -2.89 16 21 H 0.18 1.52 7.72 -2.39 -0.02 1.50 16 22 C -0.11 -1.12 10.20 30.59 0.31 -0.80 16 23 C 0.20 3.63 5.19 30.59 0.16 3.79 16 24 F -0.17 -4.39 15.71 44.97 0.71 -3.68 16 25 F -0.16 -2.94 17.60 44.97 0.79 -2.15 16 26 C 0.12 3.05 6.27 86.41 0.54 3.59 16 27 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.04 1.61 7.92 -2.39 -0.02 1.59 16 31 H 0.04 1.40 7.17 -2.39 -0.02 1.38 16 32 H 0.25 15.65 8.73 -92.71 -0.81 14.84 16 33 H 0.05 1.77 5.92 -2.39 -0.01 1.76 16 34 H 0.05 2.06 5.14 -2.39 -0.01 2.04 16 35 H 0.09 1.49 7.15 -2.39 -0.02 1.47 16 36 H 0.12 1.30 7.38 -2.39 -0.02 1.28 16 37 H 0.17 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.96 7.62 -2.39 -0.02 1.94 16 40 H 0.08 1.89 7.11 -2.39 -0.02 1.87 16 Total: -1.00 -74.88 323.14 4.41 -70.47 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 0.87 Total: 6.71 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 4.97 Total: 1.83 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -4.60 Total: -106.43 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.05 Total: -18.35 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 1.50 Total: -5.83 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 1.71 Total: 51.60 kcal Total: -74.88 4.41 -70.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091652911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.085 kcal (2) G-P(sol) polarization free energy of solvation -74.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds