Wall clock time and date at job start Tue Mar 31 2020 04:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34775 * 119.99717 * 2 1 4 4 O 1.21586 * 120.00051 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00178 * 180.02562 * 3 2 1 6 6 C 1.46495 * 120.00555 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.47447 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00133 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99946 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99632 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.45802 * 35.00062 * 10 9 7 12 12 C 1.53042 * 109.45861 * 275.02435 * 10 9 7 13 13 C 1.53195 * 109.30819 * 178.61601 * 12 10 9 14 14 N 1.46920 * 108.77526 * 54.63969 * 13 12 10 15 15 C 1.36935 * 120.63511 * 126.41179 * 14 13 12 16 16 H 1.07996 * 120.00464 * 207.67159 * 15 14 13 17 17 C 1.38818 * 119.99851 * 27.66571 * 15 14 13 18 18 N 1.31621 * 119.99793 * 17.36671 * 17 15 14 19 19 Si 1.86793 * 120.00122 * 197.37116 * 17 15 14 20 20 H 1.48501 * 109.47257 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47460 * 119.99956 * 19 17 15 22 22 H 1.48505 * 109.47413 * 239.99873 * 19 17 15 23 23 C 1.46927 * 118.73925 * 306.38422 * 14 13 12 24 24 C 1.53040 * 109.45733 * 154.97271 * 10 9 7 25 25 H 1.09003 * 109.49669 * 61.43202 * 24 10 9 26 26 O 1.42902 * 109.49920 * 301.33890 * 24 10 9 27 27 H 1.08999 * 109.46747 * 60.00527 * 1 2 3 28 28 H 1.09001 * 109.46740 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47124 * 300.00382 * 1 2 3 30 30 H 0.96995 * 120.00224 * 179.97438 * 2 1 3 31 31 H 0.97007 * 119.99592 * 0.26702 * 5 3 2 32 32 H 1.09000 * 109.46990 * 299.99767 * 6 5 3 33 33 H 1.09004 * 109.46816 * 59.99537 * 6 5 3 34 34 H 0.96993 * 120.00464 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.49984 * 298.56629 * 12 10 9 36 36 H 1.08999 * 109.49411 * 58.63848 * 12 10 9 37 37 H 1.09001 * 109.57987 * 174.42162 * 13 12 10 38 38 H 1.09000 * 109.58667 * 294.70557 * 13 12 10 39 39 H 0.97002 * 119.99950 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.59064 * 173.39673 * 23 14 13 41 41 H 1.08999 * 109.59063 * 293.68080 * 23 14 13 42 42 H 0.96700 * 114.00292 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1673 -0.0005 6 6 4.2191 2.4360 -0.0011 7 6 5.7007 2.1607 -0.0010 8 8 6.1050 1.0173 0.0000 9 7 6.5765 3.1852 -0.0009 10 6 8.0169 2.9174 -0.0014 11 1 8.2199 2.0236 -0.5911 12 6 8.4954 2.6996 1.4359 13 6 9.9949 2.3859 1.4285 14 7 10.6991 3.4594 0.7143 15 6 11.7458 4.1185 1.3017 16 1 11.9688 5.1371 1.0205 17 6 12.5204 3.4774 2.2588 18 7 12.4860 2.1657 2.3624 19 14 13.6114 4.4761 3.3995 20 1 13.4711 5.9196 3.0805 21 1 13.2045 4.2381 4.8077 22 1 15.0266 4.0646 3.2170 23 6 10.2593 3.8121 -0.6425 24 6 8.7569 4.1099 -0.6117 25 1 8.5743 4.9990 -0.0080 26 8 8.2874 4.3320 -1.9430 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9501 -0.8400 0.0004 31 1 3.9716 0.3272 -0.0048 32 1 3.9554 3.0073 -0.8911 33 1 3.9560 3.0078 0.8889 34 1 6.2532 4.0996 -0.0013 35 1 8.3154 3.6021 2.0200 36 1 7.9509 1.8653 1.8781 37 1 10.3609 2.3276 2.4536 38 1 10.1667 1.4348 0.9245 39 1 13.0275 1.7176 3.0310 40 1 10.7998 4.6948 -0.9841 41 1 10.4553 2.9795 -1.3182 42 1 8.7144 5.0745 -2.3919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099859177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:46 Heat of formation + Delta-G solvation = -89.616467 kcal Electronic energy + Delta-G solvation = -24741.910778 eV Core-core repulsion = 20950.823493 eV Total energy + Delta-G solvation = -3791.087285 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.40870 -39.58976 -38.03854 -35.45944 -34.93801 -34.61458 -34.27911 -32.04614 -30.28329 -28.95042 -28.16152 -26.08258 -24.83145 -22.48980 -21.94732 -21.07982 -20.42472 -19.62599 -18.96987 -17.35255 -16.98664 -16.51320 -16.37681 -16.11507 -15.77055 -15.06208 -14.88281 -14.56779 -14.44400 -13.95886 -13.82962 -13.58698 -13.29352 -13.14604 -12.85241 -12.59727 -12.51727 -12.31663 -12.04628 -11.62824 -11.15763 -10.92562 -10.74497 -10.49532 -10.38114 -10.29795 -10.02918 -9.93991 -9.77964 -9.57425 -9.50508 -9.11041 -8.85269 -8.50980 -6.82274 -5.89157 -3.33201 2.38180 2.62532 3.00642 3.28756 3.32519 3.39540 3.41317 4.09599 4.31817 4.46323 4.70530 4.90713 5.19758 5.22145 5.23938 5.26404 5.28233 5.42926 5.49558 5.50147 5.71720 5.90810 6.04154 6.15424 6.16624 6.22891 6.42839 6.45480 6.60402 6.64845 6.71912 6.77343 7.23335 7.54057 7.58257 7.69473 7.78307 7.86908 8.23845 8.33263 8.37195 9.08854 9.71231 10.26690 11.19478 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.028855 B = 0.002806 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.133375 B = 9976.339110 C =10485.282166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.751 5.751 3 C 0.706 3.294 4 O -0.594 6.594 5 N -0.733 5.733 6 C 0.120 3.880 7 C 0.507 3.493 8 O -0.542 6.542 9 N -0.709 5.709 10 C 0.163 3.837 11 H 0.089 0.911 12 C -0.147 4.147 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.259 4.259 16 H 0.068 0.932 17 C 0.005 3.995 18 N -0.899 5.899 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.289 1.289 23 C 0.121 3.879 24 C 0.080 3.920 25 H 0.058 0.942 26 O -0.572 6.572 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.400 0.600 31 H 0.409 0.591 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.400 0.600 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.024 0.976 39 H 0.255 0.745 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.166 -1.113 -5.018 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.406 5.406 3 C 0.405 3.595 4 O -0.473 6.473 5 N -0.392 5.392 6 C -0.008 4.008 7 C 0.292 3.708 8 O -0.419 6.419 9 N -0.359 5.359 10 C 0.059 3.941 11 H 0.107 0.893 12 C -0.187 4.187 13 C 0.045 3.955 14 N -0.312 5.312 15 C -0.388 4.388 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.543 5.543 19 Si 0.734 3.266 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.216 1.216 23 C -0.007 4.007 24 C 0.019 3.981 25 H 0.075 0.925 26 O -0.376 6.376 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.233 0.767 31 H 0.246 0.754 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.234 0.766 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -18.702 -1.567 -4.760 19.362 hybrid contribution 1.282 0.576 0.490 1.488 sum -17.421 -0.991 -4.270 17.964 Atomic orbital electron populations 1.21394 0.78030 1.01974 1.02278 1.44877 1.07780 1.07200 1.80788 1.15836 0.81419 0.84378 0.77858 1.90929 1.67980 1.30268 1.58075 1.44733 1.04591 1.09846 1.79988 1.20890 0.88588 0.86666 1.04680 1.20402 0.88140 0.85747 0.76471 1.90697 1.79787 1.21225 1.50215 1.45996 1.07081 1.08931 1.73848 1.21059 0.77103 0.98233 0.97687 0.89309 1.22611 1.00883 1.01331 0.93874 1.20829 0.85325 0.89632 0.99751 1.44058 1.35550 1.41320 1.10292 1.19200 1.06021 0.94503 1.19120 0.91443 1.25079 0.97693 0.95209 1.01487 1.70044 1.42187 1.06585 1.35439 0.86204 0.80008 0.79596 0.80814 1.20208 1.21438 1.21633 1.21529 0.90859 0.99115 0.89218 1.22778 0.96249 0.96705 0.82391 0.92451 1.86473 1.66858 1.55733 1.28535 0.92369 0.90642 0.92362 0.76719 0.75403 0.88556 0.88570 0.76646 0.92231 0.91910 0.88812 0.95801 0.93459 0.92114 0.95295 0.77874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.73 10.70 59.85 0.64 1.37 16 2 N -0.75 -6.36 5.72 -72.07 -0.41 -6.77 16 3 C 0.71 8.57 8.57 -86.92 -0.74 7.82 16 4 O -0.59 -9.32 16.34 5.29 0.09 -9.24 16 5 N -0.73 -8.32 5.53 -66.42 -0.37 -8.68 16 6 C 0.12 1.36 6.15 -5.20 -0.03 1.33 16 7 C 0.51 7.09 7.86 -10.99 -0.09 7.01 16 8 O -0.54 -9.36 15.33 5.56 0.09 -9.27 16 9 N -0.71 -9.72 4.92 -53.76 -0.26 -9.98 16 10 C 0.16 2.77 2.12 -67.88 -0.14 2.63 16 11 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 12 C -0.15 -2.76 5.65 -26.61 -0.15 -2.91 16 13 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16 14 N -0.59 -14.05 2.99 -172.32 -0.52 -14.56 16 15 C -0.26 -6.80 9.59 -15.06 -0.14 -6.94 16 16 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 17 C 0.00 0.12 4.91 -17.43 -0.09 0.04 16 18 N -0.90 -25.46 11.19 55.49 0.62 -24.84 16 19 Si 0.90 21.00 29.59 -169.99 -5.03 15.97 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.12 2.37 6.14 -3.71 -0.02 2.35 16 24 C 0.08 1.29 3.14 -26.61 -0.08 1.21 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 26 O -0.57 -8.11 13.16 -35.23 -0.46 -8.57 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.40 2.33 8.84 -40.82 -0.36 1.97 16 31 H 0.41 4.40 7.45 -40.82 -0.30 4.09 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.40 4.44 8.60 -40.82 -0.35 4.09 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.09 2.44 6.04 -51.93 -0.31 2.12 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.37 3.78 9.08 45.56 0.41 4.19 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -34.23 349.38 -7.37 -41.59 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.50 Total: 11.23 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: -0.87 Total: 17.86 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -0.94 Total: -64.84 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.29 Total: -27.08 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.23 -7.37 -41.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099859177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.026 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds