Wall clock time and date at job start Tue Mar 31 2020 04:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34775 * 119.99717 * 2 1 4 4 O 1.21586 * 120.00051 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00178 * 180.02562 * 3 2 1 6 6 C 1.46495 * 120.00555 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.47447 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00133 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99946 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99632 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.45802 * 35.00062 * 10 9 7 12 12 C 1.53042 * 109.45861 * 275.02435 * 10 9 7 13 13 C 1.53195 * 109.30819 * 178.61601 * 12 10 9 14 14 N 1.46920 * 108.77526 * 54.63969 * 13 12 10 15 15 C 1.36935 * 120.63511 * 126.41179 * 14 13 12 16 16 H 1.07996 * 120.00464 * 207.67159 * 15 14 13 17 17 C 1.38818 * 119.99851 * 27.66571 * 15 14 13 18 18 N 1.31621 * 119.99793 * 17.36671 * 17 15 14 19 19 Si 1.86793 * 120.00122 * 197.37116 * 17 15 14 20 20 H 1.48501 * 109.47257 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47460 * 119.99956 * 19 17 15 22 22 H 1.48505 * 109.47413 * 239.99873 * 19 17 15 23 23 C 1.46927 * 118.73925 * 306.38422 * 14 13 12 24 24 C 1.53040 * 109.45733 * 154.97271 * 10 9 7 25 25 H 1.09003 * 109.49669 * 61.43202 * 24 10 9 26 26 O 1.42902 * 109.49920 * 301.33890 * 24 10 9 27 27 H 1.08999 * 109.46747 * 60.00527 * 1 2 3 28 28 H 1.09001 * 109.46740 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47124 * 300.00382 * 1 2 3 30 30 H 0.96995 * 120.00224 * 179.97438 * 2 1 3 31 31 H 0.97007 * 119.99592 * 0.26702 * 5 3 2 32 32 H 1.09000 * 109.46990 * 299.99767 * 6 5 3 33 33 H 1.09004 * 109.46816 * 59.99537 * 6 5 3 34 34 H 0.96993 * 120.00464 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.49984 * 298.56629 * 12 10 9 36 36 H 1.08999 * 109.49411 * 58.63848 * 12 10 9 37 37 H 1.09001 * 109.57987 * 174.42162 * 13 12 10 38 38 H 1.09000 * 109.58667 * 294.70557 * 13 12 10 39 39 H 0.97002 * 119.99950 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.59064 * 173.39673 * 23 14 13 41 41 H 1.08999 * 109.59063 * 293.68080 * 23 14 13 42 42 H 0.96700 * 114.00292 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1673 -0.0005 6 6 4.2191 2.4360 -0.0011 7 6 5.7007 2.1607 -0.0010 8 8 6.1050 1.0173 0.0000 9 7 6.5765 3.1852 -0.0009 10 6 8.0169 2.9174 -0.0014 11 1 8.2199 2.0236 -0.5911 12 6 8.4954 2.6996 1.4359 13 6 9.9949 2.3859 1.4285 14 7 10.6991 3.4594 0.7143 15 6 11.7458 4.1185 1.3017 16 1 11.9688 5.1371 1.0205 17 6 12.5204 3.4774 2.2588 18 7 12.4860 2.1657 2.3624 19 14 13.6114 4.4761 3.3995 20 1 13.4711 5.9196 3.0805 21 1 13.2045 4.2381 4.8077 22 1 15.0266 4.0646 3.2170 23 6 10.2593 3.8121 -0.6425 24 6 8.7569 4.1099 -0.6117 25 1 8.5743 4.9990 -0.0080 26 8 8.2874 4.3320 -1.9430 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9501 -0.8400 0.0004 31 1 3.9716 0.3272 -0.0048 32 1 3.9554 3.0073 -0.8911 33 1 3.9560 3.0078 0.8889 34 1 6.2532 4.0996 -0.0013 35 1 8.3154 3.6021 2.0200 36 1 7.9509 1.8653 1.8781 37 1 10.3609 2.3276 2.4536 38 1 10.1667 1.4348 0.9245 39 1 13.0275 1.7176 3.0310 40 1 10.7998 4.6948 -0.9841 41 1 10.4553 2.9795 -1.3182 42 1 8.7144 5.0745 -2.3919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099859177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:45 Heat of formation + Delta-G solvation = -120.612263 kcal Electronic energy + Delta-G solvation = -24743.254857 eV Core-core repulsion = 20950.823493 eV Total energy + Delta-G solvation = -3792.431364 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.46956 -40.70825 -39.42291 -36.96678 -35.94414 -35.63161 -35.39643 -33.81300 -31.90297 -30.37873 -29.29631 -27.21620 -26.26404 -24.05757 -23.55434 -21.97733 -21.61812 -21.15152 -19.92035 -18.93729 -18.11046 -17.91375 -17.51944 -17.11015 -16.98856 -16.64925 -16.05955 -15.76427 -15.65254 -15.29231 -15.21911 -14.98590 -14.54112 -14.28019 -14.25733 -13.86145 -13.68603 -13.36774 -13.25864 -13.00917 -12.96629 -12.75846 -12.37729 -12.09220 -12.04715 -11.88386 -11.53144 -11.40306 -11.11237 -10.94977 -10.58065 -10.48588 -10.08998 -9.84206 -8.76965 -7.90827 -5.37712 1.47292 1.49930 1.49980 1.51552 1.60047 2.08473 2.23339 2.49030 3.12781 3.26433 3.33709 3.62577 3.63964 3.88801 4.06879 4.22728 4.34610 4.35860 4.40246 4.49080 4.53719 4.69125 4.69275 4.85115 4.93884 4.97856 5.02655 5.13032 5.26980 5.38147 5.43270 5.48488 5.60996 5.66740 5.91632 6.33872 6.47159 6.89214 6.99451 7.09764 7.14873 7.50081 7.78190 8.30166 9.16576 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.028855 B = 0.002806 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.133375 B = 9976.339110 C =10485.282166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.740 5.740 3 C 0.701 3.299 4 O -0.632 6.632 5 N -0.732 5.732 6 C 0.128 3.872 7 C 0.510 3.490 8 O -0.576 6.576 9 N -0.697 5.697 10 C 0.171 3.829 11 H 0.059 0.941 12 C -0.129 4.129 13 C 0.179 3.821 14 N -0.604 5.604 15 C -0.263 4.263 16 H 0.077 0.923 17 C -0.052 4.052 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.262 1.262 21 H -0.291 1.291 22 H -0.295 1.295 23 C 0.117 3.883 24 C 0.102 3.898 25 H 0.075 0.925 26 O -0.570 6.570 27 H 0.049 0.951 28 H 0.112 0.888 29 H 0.049 0.951 30 H 0.413 0.587 31 H 0.412 0.588 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.417 0.583 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.062 0.938 38 H -0.008 1.008 39 H 0.250 0.750 40 H 0.074 0.926 41 H 0.012 0.988 42 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.706 0.368 -5.471 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.395 5.395 3 C 0.400 3.600 4 O -0.514 6.514 5 N -0.390 5.390 6 C 0.000 4.000 7 C 0.297 3.703 8 O -0.456 6.456 9 N -0.348 5.348 10 C 0.066 3.934 11 H 0.077 0.923 12 C -0.169 4.169 13 C 0.052 3.948 14 N -0.329 5.329 15 C -0.393 4.393 16 H 0.094 0.906 17 C -0.247 4.247 18 N -0.582 5.582 19 Si 0.797 3.203 20 H -0.186 1.186 21 H -0.218 1.218 22 H -0.222 1.222 23 C -0.010 4.010 24 C 0.041 3.959 25 H 0.093 0.907 26 O -0.378 6.378 27 H 0.068 0.932 28 H 0.130 0.870 29 H 0.067 0.933 30 H 0.249 0.751 31 H 0.249 0.751 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.254 0.746 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.010 0.990 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.030 0.970 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -20.272 -0.063 -5.253 20.941 hybrid contribution 1.742 0.069 0.530 1.822 sum -18.530 0.005 -4.723 19.122 Atomic orbital electron populations 1.21568 0.76885 1.04157 1.01425 1.44883 1.08523 1.06784 1.79353 1.16036 0.81436 0.84799 0.77734 1.90899 1.68655 1.31845 1.59997 1.44724 1.04504 1.10004 1.79808 1.20867 0.86206 0.86963 1.05930 1.20836 0.89180 0.85046 0.75273 1.90692 1.80539 1.22734 1.51673 1.45731 1.05490 1.09991 1.73584 1.20660 0.79245 0.97689 0.95822 0.92259 1.22325 0.97411 1.01604 0.95592 1.20556 0.88201 0.88572 0.97444 1.44273 1.35452 1.41084 1.12068 1.19590 1.05947 0.94939 1.18776 0.90557 1.25867 0.99569 0.96026 1.03254 1.70207 1.43545 1.08238 1.36230 0.85181 0.77700 0.78918 0.78461 1.18553 1.21811 1.22231 1.21703 0.93640 0.98918 0.86744 1.22309 0.93195 0.96638 0.83797 0.90711 1.86447 1.66723 1.57150 1.27461 0.93192 0.86975 0.93258 0.75087 0.75060 0.87254 0.87203 0.74613 0.91121 0.92134 0.91957 0.98996 0.94042 0.90711 0.97001 0.75351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.23 10.70 127.77 1.37 2.59 16 2 N -0.74 -11.25 5.72 -500.19 -2.86 -14.11 16 3 C 0.70 16.06 8.57 179.06 1.53 17.59 16 4 O -0.63 -19.17 16.34 -3.99 -0.07 -19.23 16 5 N -0.73 -15.54 5.53 -482.32 -2.67 -18.20 16 6 C 0.13 2.65 6.15 85.63 0.53 3.18 16 7 C 0.51 13.48 7.86 87.66 0.69 14.17 16 8 O -0.58 -19.65 15.33 -3.02 -0.05 -19.69 16 9 N -0.70 -17.65 4.92 -442.39 -2.18 -19.82 16 10 C 0.17 5.65 2.12 45.02 0.10 5.75 16 11 H 0.06 2.35 7.58 -2.39 -0.02 2.34 16 12 C -0.13 -4.84 5.65 30.67 0.17 -4.66 16 13 C 0.18 8.59 5.31 86.36 0.46 9.05 16 14 N -0.60 -29.01 2.99 -699.10 -2.09 -31.10 16 15 C -0.26 -13.72 9.59 84.04 0.81 -12.92 16 16 H 0.08 3.79 7.89 -2.91 -0.02 3.76 16 17 C -0.05 -2.80 4.91 84.86 0.42 -2.39 16 18 N -0.94 -54.79 11.19 21.65 0.24 -54.55 16 19 Si 0.97 43.43 29.59 68.60 2.03 45.46 16 20 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 23 C 0.12 4.48 6.14 86.36 0.53 5.01 16 24 C 0.10 3.07 3.14 30.67 0.10 3.17 16 25 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 26 O -0.57 -14.43 13.16 -148.98 -1.96 -16.39 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.41 3.99 8.84 -92.71 -0.82 3.17 16 31 H 0.41 8.38 7.45 -92.70 -0.69 7.68 16 32 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.42 7.89 8.60 -92.71 -0.80 7.09 16 35 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.06 3.38 6.04 -2.39 -0.01 3.36 16 38 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 40 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.40 6.50 9.08 -74.06 -0.67 5.83 16 Total: -1.00 -75.64 349.38 -4.80 -80.44 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -1.90 Total: 26.66 kcal Atomic # 6 Polarization: 33.85 SS G_CDS: 6.69 Total: 40.54 kcal Atomic # 7 Polarization: -128.24 SS G_CDS: -9.55 Total: -137.79 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -2.07 Total: -55.31 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -75.64 -4.80 -80.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099859177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.173 kcal (2) G-P(sol) polarization free energy of solvation -75.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds