Wall clock time and date at job start Tue Mar 31 2020 04:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 119.99941 * 2 1 4 4 C 1.53002 * 109.47339 * 270.00192 * 3 2 1 5 5 C 1.53004 * 109.46771 * 180.02562 * 4 3 2 6 6 O 1.42904 * 109.46545 * 180.02562 * 5 4 3 7 7 C 1.34776 * 119.99694 * 180.02562 * 2 1 3 8 8 O 1.21344 * 120.00075 * 182.20863 * 7 2 1 9 9 C 1.49454 * 119.99976 * 2.20942 * 7 2 1 10 10 O 1.21344 * 120.00405 * 356.17017 * 9 7 2 11 11 N 1.34781 * 119.99731 * 176.17798 * 9 7 2 12 12 C 1.47016 * 125.64960 * 359.94693 * 11 9 7 13 13 C 1.54371 * 107.29023 * 181.12891 * 12 11 9 14 14 C 1.55160 * 102.91527 * 22.14407 * 13 12 11 15 15 O 1.42901 * 111.00406 * 82.63873 * 14 13 12 16 16 C 1.50704 * 111.00280 * 206.44782 * 14 13 12 17 17 H 1.07996 * 120.00004 * 350.76737 * 16 14 13 18 18 C 1.37877 * 119.99894 * 170.49187 * 16 14 13 19 19 N 1.31515 * 120.00078 * 355.34957 * 18 16 14 20 20 Si 1.86797 * 119.99921 * 175.35606 * 18 16 14 21 21 H 1.48498 * 109.47218 * 94.97616 * 20 18 16 22 22 H 1.48510 * 109.46926 * 214.97677 * 20 18 16 23 23 H 1.48501 * 109.47042 * 334.97496 * 20 18 16 24 24 C 1.47424 * 125.64582 * 179.97438 * 11 9 7 25 25 H 1.09008 * 109.46835 * 263.85303 * 1 2 3 26 26 H 1.08998 * 109.47093 * 23.84992 * 1 2 3 27 27 H 1.08993 * 109.47242 * 143.85286 * 1 2 3 28 28 H 1.09002 * 109.47492 * 30.00658 * 3 2 1 29 29 H 1.09008 * 109.47112 * 150.00600 * 3 2 1 30 30 H 1.08998 * 109.47337 * 300.00154 * 4 3 2 31 31 H 1.08995 * 109.46697 * 60.00401 * 4 3 2 32 32 H 1.08998 * 109.47044 * 300.00001 * 5 4 3 33 33 H 1.08995 * 109.47455 * 60.00532 * 5 4 3 34 34 H 0.96703 * 113.99608 * 179.97438 * 6 5 4 35 35 H 1.08990 * 109.88763 * 300.52161 * 12 11 9 36 36 H 1.09008 * 109.87779 * 61.68796 * 12 11 9 37 37 H 1.08996 * 110.71032 * 263.80104 * 13 12 11 38 38 H 1.09004 * 110.75522 * 140.50659 * 13 12 11 39 39 H 0.96701 * 114.00466 * 183.17677 * 15 14 13 40 40 H 0.97004 * 120.00195 * 180.02562 * 19 18 16 41 41 H 1.09003 * 110.36496 * 36.99698 * 24 11 9 42 42 H 1.09000 * 110.36631 * 274.67182 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2180 3.0352 -1.4424 6 8 3.4556 3.4480 -2.7897 7 6 2.1388 -1.1672 -0.0005 8 8 3.3516 -1.1677 0.0400 9 6 1.3923 -2.4610 -0.0510 10 8 0.1793 -2.4632 -0.0213 11 7 2.0666 -3.6254 -0.1293 12 6 3.5292 -3.7673 -0.1737 13 6 3.8406 -5.2748 -0.2900 14 6 2.5257 -5.8565 -0.8731 15 8 2.4828 -5.7025 -2.2932 16 6 2.3556 -7.3026 -0.4843 17 1 3.1662 -7.8320 -0.0058 18 6 1.1632 -7.9480 -0.7343 19 7 0.1441 -7.2790 -1.2277 20 14 0.9950 -9.7728 -0.3720 21 1 0.4040 -9.9571 0.9778 22 1 0.1127 -10.4001 -1.3886 23 1 2.3347 -10.4119 -0.4172 24 6 1.4595 -4.9677 -0.1852 25 1 -0.3633 -0.1101 1.0218 26 1 -0.3633 0.9399 -0.4155 27 1 -0.3633 -0.8298 -0.6061 28 1 1.6085 2.0283 0.5139 29 1 3.1500 1.1383 0.5138 30 1 3.0415 0.9508 -1.9564 31 1 1.5000 1.8408 -1.9562 32 1 2.6293 3.7949 -0.9283 33 1 4.1705 2.9044 -0.9288 34 1 3.9376 4.2829 -2.8660 35 1 3.9268 -3.2393 -1.0403 36 1 3.9683 -3.3673 0.7403 37 1 4.0497 -5.7020 0.6907 38 1 4.6736 -5.4457 -0.9719 39 1 1.6589 -6.0072 -2.6972 40 1 -0.6949 -7.7330 -1.4033 41 1 0.5445 -4.9458 -0.7774 42 1 1.2526 -5.3327 0.8208 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118249369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:45 Heat of formation + Delta-G solvation = -152.429675 kcal Electronic energy + Delta-G solvation = -25418.119530 eV Core-core repulsion = 21592.015709 eV Total energy + Delta-G solvation = -3826.103821 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52265 -38.62882 -37.37734 -37.23651 -35.87582 -34.19227 -32.31383 -32.22090 -30.21770 -27.89594 -27.06002 -26.61502 -25.22296 -23.28535 -22.14812 -21.03824 -19.68109 -18.89164 -17.66081 -17.22652 -16.85556 -16.71476 -15.94401 -15.72573 -15.47185 -15.15674 -14.66983 -14.39967 -14.27377 -13.64160 -13.19238 -13.15852 -13.10446 -12.91399 -12.75550 -12.43405 -12.26840 -12.22114 -11.72202 -11.50089 -11.41774 -11.24225 -11.04999 -10.91487 -10.63200 -10.56365 -10.50400 -10.25527 -10.22102 -9.31909 -8.99301 -8.76617 -8.72293 -8.41337 -7.86301 -6.30052 -4.40735 1.80690 2.55289 3.18897 3.27336 3.31094 3.58200 3.71343 4.03886 4.24678 4.54148 4.70941 4.88238 4.96764 5.01735 5.06814 5.20963 5.29505 5.37683 5.49151 5.68758 5.78134 5.81945 5.84141 5.94881 6.05254 6.10748 6.29949 6.40635 6.54323 6.74274 6.85127 6.88567 7.10978 7.22453 7.31991 7.32779 7.71079 7.81619 7.99329 8.08492 8.47748 8.64231 9.23909 9.32034 10.75640 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.028954 B = 0.003354 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.804968 B = 8345.710233 C = 8692.798512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.594 5.594 3 C 0.118 3.882 4 C -0.139 4.139 5 C 0.081 3.919 6 O -0.574 6.574 7 C 0.509 3.491 8 O -0.518 6.518 9 C 0.508 3.492 10 O -0.532 6.532 11 N -0.574 5.574 12 C 0.111 3.889 13 C -0.121 4.121 14 C 0.246 3.754 15 O -0.581 6.581 16 C -0.538 4.538 17 H 0.068 0.932 18 C 0.070 3.930 19 N -0.891 5.891 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.096 3.904 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.379 0.621 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.378 0.622 40 H 0.270 0.730 41 H 0.095 0.905 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 17.398 2.549 17.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.328 5.328 3 C -0.005 4.005 4 C -0.178 4.178 5 C 0.002 3.998 6 O -0.379 6.379 7 C 0.292 3.708 8 O -0.393 6.393 9 C 0.291 3.709 10 O -0.412 6.412 11 N -0.306 5.306 12 C -0.012 4.012 13 C -0.159 4.159 14 C 0.206 3.794 15 O -0.388 6.388 16 C -0.576 4.576 17 H 0.086 0.914 18 C -0.133 4.133 19 N -0.529 5.529 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.024 4.024 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.128 0.872 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.226 0.774 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.226 0.774 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.907 17.105 2.524 17.533 hybrid contribution -0.556 -0.533 0.312 0.831 sum 2.351 16.572 2.836 16.977 Atomic orbital electron populations 1.22399 0.77522 1.04041 1.03534 1.47647 1.08267 1.04833 1.72036 1.21373 0.98274 0.84639 0.96235 1.21898 1.01485 0.96746 0.97626 1.22047 0.98678 0.95697 0.83339 1.86505 1.79945 1.44486 1.26981 1.20479 0.87563 0.85389 0.77362 1.90710 1.13501 1.87236 1.47860 1.19513 0.87200 0.84136 0.80097 1.90620 1.13121 1.86141 1.51289 1.48729 1.08904 1.06505 1.66430 1.22145 0.79665 0.97900 1.01470 1.22712 0.99465 0.92453 1.01232 1.19666 0.88421 0.92254 0.79085 1.86157 1.43560 1.87244 1.21845 1.21457 0.99744 0.95352 1.41057 0.91379 1.25099 0.95316 0.99096 0.93826 1.69807 1.02906 1.36369 1.43833 0.86383 0.78243 0.84166 0.78098 1.20522 1.20928 1.19620 1.23479 1.00005 0.77208 1.01751 0.92315 0.91979 0.87151 0.90038 0.89411 0.90510 0.90887 0.93591 0.93305 0.77409 0.91381 0.91657 0.90308 0.90582 0.77376 0.92026 0.88692 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 9.52 59.85 0.57 1.40 16 2 N -0.59 -8.27 2.87 -182.08 -0.52 -8.79 16 3 C 0.12 1.25 5.40 -4.04 -0.02 1.23 16 4 C -0.14 -1.50 5.91 -26.73 -0.16 -1.66 16 5 C 0.08 0.68 7.05 37.16 0.26 0.94 16 6 O -0.57 -5.52 13.66 -35.23 -0.48 -6.00 16 7 C 0.51 8.93 7.70 -11.58 -0.09 8.84 16 8 O -0.52 -9.63 13.71 5.50 0.08 -9.56 16 9 C 0.51 10.30 7.81 -11.58 -0.09 10.21 16 10 O -0.53 -11.32 13.39 5.50 0.07 -11.25 16 11 N -0.57 -12.29 3.33 -170.99 -0.57 -12.86 16 12 C 0.11 2.18 5.49 -3.04 -0.02 2.16 16 13 C -0.12 -2.48 6.14 -24.87 -0.15 -2.63 16 14 C 0.25 5.93 0.89 -89.61 -0.08 5.85 16 15 O -0.58 -14.59 13.18 -35.23 -0.46 -15.06 16 16 C -0.54 -13.80 8.28 -34.44 -0.29 -14.08 16 17 H 0.07 1.72 7.80 -52.49 -0.41 1.31 16 18 C 0.07 1.80 5.26 -17.82 -0.09 1.70 16 19 N -0.89 -23.26 10.69 55.43 0.59 -22.67 16 20 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 C 0.10 2.29 5.19 -2.52 -0.01 2.27 16 25 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.06 0.58 8.03 -51.93 -0.42 0.16 16 27 H 0.11 1.68 5.40 -51.93 -0.28 1.39 16 28 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 29 H 0.09 0.98 7.39 -51.92 -0.38 0.59 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.38 1.73 9.12 45.56 0.42 2.14 16 35 H 0.07 1.35 7.67 -51.93 -0.40 0.96 16 36 H 0.07 1.19 7.62 -51.92 -0.40 0.79 16 37 H 0.08 1.51 8.03 -51.93 -0.42 1.10 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.38 9.57 7.94 45.56 0.36 9.93 16 40 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 41 H 0.09 2.50 7.12 -51.93 -0.37 2.13 16 42 H 0.07 1.66 8.03 -51.93 -0.42 1.24 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -30.33 345.67 -6.08 -36.41 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -4.80 Total: 13.29 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: -0.17 Total: 16.24 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -0.50 Total: -44.32 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -0.80 Total: -41.87 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.33 -6.08 -36.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118249369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.018 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds