Wall clock time and date at job start Tue Mar 31 2020 04:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 119.99941 * 2 1 4 4 C 1.53002 * 109.47339 * 270.00192 * 3 2 1 5 5 C 1.53004 * 109.46771 * 180.02562 * 4 3 2 6 6 O 1.42904 * 109.46545 * 180.02562 * 5 4 3 7 7 C 1.34776 * 119.99694 * 180.02562 * 2 1 3 8 8 O 1.21344 * 120.00075 * 182.20863 * 7 2 1 9 9 C 1.49454 * 119.99976 * 2.20942 * 7 2 1 10 10 O 1.21344 * 120.00405 * 356.17017 * 9 7 2 11 11 N 1.34781 * 119.99731 * 176.17798 * 9 7 2 12 12 C 1.47016 * 125.64960 * 359.94693 * 11 9 7 13 13 C 1.54371 * 107.29023 * 181.12891 * 12 11 9 14 14 C 1.55160 * 102.91527 * 22.14407 * 13 12 11 15 15 O 1.42901 * 111.00406 * 82.63873 * 14 13 12 16 16 C 1.50704 * 111.00280 * 206.44782 * 14 13 12 17 17 H 1.07996 * 120.00004 * 350.76737 * 16 14 13 18 18 C 1.37877 * 119.99894 * 170.49187 * 16 14 13 19 19 N 1.31515 * 120.00078 * 355.34957 * 18 16 14 20 20 Si 1.86797 * 119.99921 * 175.35606 * 18 16 14 21 21 H 1.48498 * 109.47218 * 94.97616 * 20 18 16 22 22 H 1.48510 * 109.46926 * 214.97677 * 20 18 16 23 23 H 1.48501 * 109.47042 * 334.97496 * 20 18 16 24 24 C 1.47424 * 125.64582 * 179.97438 * 11 9 7 25 25 H 1.09008 * 109.46835 * 263.85303 * 1 2 3 26 26 H 1.08998 * 109.47093 * 23.84992 * 1 2 3 27 27 H 1.08993 * 109.47242 * 143.85286 * 1 2 3 28 28 H 1.09002 * 109.47492 * 30.00658 * 3 2 1 29 29 H 1.09008 * 109.47112 * 150.00600 * 3 2 1 30 30 H 1.08998 * 109.47337 * 300.00154 * 4 3 2 31 31 H 1.08995 * 109.46697 * 60.00401 * 4 3 2 32 32 H 1.08998 * 109.47044 * 300.00001 * 5 4 3 33 33 H 1.08995 * 109.47455 * 60.00532 * 5 4 3 34 34 H 0.96703 * 113.99608 * 179.97438 * 6 5 4 35 35 H 1.08990 * 109.88763 * 300.52161 * 12 11 9 36 36 H 1.09008 * 109.87779 * 61.68796 * 12 11 9 37 37 H 1.08996 * 110.71032 * 263.80104 * 13 12 11 38 38 H 1.09004 * 110.75522 * 140.50659 * 13 12 11 39 39 H 0.96701 * 114.00466 * 183.17677 * 15 14 13 40 40 H 0.97004 * 120.00195 * 180.02562 * 19 18 16 41 41 H 1.09003 * 110.36496 * 36.99698 * 24 11 9 42 42 H 1.09000 * 110.36631 * 274.67182 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2180 3.0352 -1.4424 6 8 3.4556 3.4480 -2.7897 7 6 2.1388 -1.1672 -0.0005 8 8 3.3516 -1.1677 0.0400 9 6 1.3923 -2.4610 -0.0510 10 8 0.1793 -2.4632 -0.0213 11 7 2.0666 -3.6254 -0.1293 12 6 3.5292 -3.7673 -0.1737 13 6 3.8406 -5.2748 -0.2900 14 6 2.5257 -5.8565 -0.8731 15 8 2.4828 -5.7025 -2.2932 16 6 2.3556 -7.3026 -0.4843 17 1 3.1662 -7.8320 -0.0058 18 6 1.1632 -7.9480 -0.7343 19 7 0.1441 -7.2790 -1.2277 20 14 0.9950 -9.7728 -0.3720 21 1 0.4040 -9.9571 0.9778 22 1 0.1127 -10.4001 -1.3886 23 1 2.3347 -10.4119 -0.4172 24 6 1.4595 -4.9677 -0.1852 25 1 -0.3633 -0.1101 1.0218 26 1 -0.3633 0.9399 -0.4155 27 1 -0.3633 -0.8298 -0.6061 28 1 1.6085 2.0283 0.5139 29 1 3.1500 1.1383 0.5138 30 1 3.0415 0.9508 -1.9564 31 1 1.5000 1.8408 -1.9562 32 1 2.6293 3.7949 -0.9283 33 1 4.1705 2.9044 -0.9288 34 1 3.9376 4.2829 -2.8660 35 1 3.9268 -3.2393 -1.0403 36 1 3.9683 -3.3673 0.7403 37 1 4.0497 -5.7020 0.6907 38 1 4.6736 -5.4457 -0.9719 39 1 1.6589 -6.0072 -2.6972 40 1 -0.6949 -7.7330 -1.4033 41 1 0.5445 -4.9458 -0.7774 42 1 1.2526 -5.3327 0.8208 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118249369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:45 Heat of formation + Delta-G solvation = -177.680355 kcal Electronic energy + Delta-G solvation = -25419.214482 eV Core-core repulsion = 21592.015709 eV Total energy + Delta-G solvation = -3827.198773 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.96694 -40.16415 -38.93428 -38.14823 -37.06568 -35.93376 -34.29801 -33.13204 -31.94986 -29.68374 -28.12614 -27.99260 -26.77899 -24.76424 -23.32336 -22.20414 -21.51401 -20.30471 -19.13579 -18.45134 -18.33554 -17.95406 -17.37726 -17.13481 -16.85829 -16.54619 -16.18684 -16.05365 -15.47741 -14.98972 -14.70092 -14.67679 -14.41205 -14.12335 -14.04782 -13.89783 -13.61542 -13.45172 -13.35825 -13.19147 -12.82529 -12.61591 -12.37567 -12.29346 -12.20510 -12.13305 -12.08900 -12.00825 -11.15117 -10.88051 -10.72335 -10.46772 -10.28037 -9.98439 -9.56004 -8.24670 -6.42818 0.32994 1.23022 1.42919 1.46177 1.56151 2.08713 2.32971 2.41920 3.00339 3.12178 3.37022 3.74777 3.87176 4.03287 4.10846 4.15388 4.30911 4.31107 4.34224 4.38256 4.57962 4.58191 4.66146 4.71443 4.74362 4.94310 5.00578 5.02449 5.06647 5.11173 5.22138 5.33742 5.39001 5.43653 5.73628 5.88328 6.03600 6.31749 6.57065 6.66909 6.90649 6.93001 7.22961 7.32453 8.79509 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.028954 B = 0.003354 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.804968 B = 8345.710233 C = 8692.798512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.582 5.582 3 C 0.117 3.883 4 C -0.136 4.136 5 C 0.083 3.917 6 O -0.601 6.601 7 C 0.509 3.491 8 O -0.533 6.533 9 C 0.499 3.501 10 O -0.547 6.547 11 N -0.585 5.585 12 C 0.120 3.880 13 C -0.114 4.114 14 C 0.231 3.769 15 O -0.586 6.586 16 C -0.556 4.556 17 H 0.069 0.931 18 C 0.029 3.971 19 N -0.911 5.911 20 Si 0.965 3.035 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.268 1.268 24 C 0.112 3.888 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.400 0.600 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.372 0.628 40 H 0.270 0.730 41 H 0.063 0.937 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 19.133 3.456 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.315 5.315 3 C -0.004 4.004 4 C -0.175 4.175 5 C 0.005 3.995 6 O -0.410 6.410 7 C 0.291 3.709 8 O -0.410 6.410 9 C 0.283 3.717 10 O -0.428 6.428 11 N -0.317 5.317 12 C -0.002 4.002 13 C -0.152 4.152 14 C 0.191 3.809 15 O -0.393 6.393 16 C -0.595 4.595 17 H 0.087 0.913 18 C -0.173 4.173 19 N -0.550 5.550 20 Si 0.790 3.210 21 H -0.202 1.202 22 H -0.209 1.209 23 H -0.192 1.192 24 C -0.010 4.010 25 H 0.084 0.916 26 H 0.120 0.880 27 H 0.098 0.902 28 H 0.142 0.858 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.250 0.750 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.220 0.780 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.391 18.902 3.433 19.508 hybrid contribution -0.766 -0.968 -0.003 1.235 sum 2.625 17.934 3.431 18.447 Atomic orbital electron populations 1.22420 0.76510 1.04909 1.03673 1.47783 1.09055 1.04824 1.69858 1.21661 0.98644 0.83608 0.96516 1.21845 1.01173 0.97269 0.97192 1.22057 0.99226 0.95007 0.83237 1.86443 1.80567 1.46185 1.27796 1.19942 0.87228 0.85352 0.78345 1.90697 1.13702 1.87313 1.49285 1.20212 0.87313 0.85007 0.79167 1.90623 1.13969 1.86711 1.51476 1.48775 1.09553 1.06108 1.67275 1.22130 0.78646 0.97248 1.02206 1.22723 0.97900 0.92773 1.01824 1.19878 0.90410 0.92107 0.78480 1.86152 1.43210 1.87245 1.22719 1.21727 0.99989 0.96344 1.41397 0.91295 1.25807 0.95022 1.02792 0.93650 1.69922 1.03148 1.37632 1.44291 0.85434 0.78147 0.79569 0.77816 1.20203 1.20850 1.19210 1.23013 0.98888 0.78925 1.00130 0.91567 0.88036 0.90198 0.85796 0.89674 0.94170 0.91053 0.90551 0.92576 0.74999 0.91708 0.89834 0.88925 0.89688 0.78026 0.92080 0.91839 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.52 9.52 127.77 1.22 2.74 16 2 N -0.58 -15.23 2.87 -848.34 -2.44 -17.67 16 3 C 0.12 2.14 5.40 86.38 0.47 2.61 16 4 C -0.14 -2.69 5.91 30.60 0.18 -2.51 16 5 C 0.08 1.17 7.05 71.98 0.51 1.67 16 6 O -0.60 -10.37 13.66 -148.98 -2.04 -12.40 16 7 C 0.51 17.61 7.70 87.27 0.67 18.28 16 8 O -0.53 -19.45 13.71 -3.23 -0.04 -19.50 16 9 C 0.50 20.53 7.81 87.27 0.68 21.21 16 10 O -0.55 -23.87 13.39 -3.23 -0.04 -23.91 16 11 N -0.59 -25.47 3.33 -813.25 -2.70 -28.18 16 12 C 0.12 4.66 5.49 86.75 0.48 5.14 16 13 C -0.11 -4.64 6.14 31.80 0.20 -4.45 16 14 C 0.23 11.32 0.89 -10.14 -0.01 11.31 16 15 O -0.59 -30.15 13.18 -148.98 -1.96 -32.12 16 16 C -0.56 -28.76 8.28 25.60 0.21 -28.55 16 17 H 0.07 3.47 7.80 -2.91 -0.02 3.45 16 18 C 0.03 1.48 5.26 84.65 0.45 1.93 16 19 N -0.91 -48.66 10.69 21.45 0.23 -48.43 16 20 Si 0.97 41.22 29.54 68.60 2.03 43.25 16 21 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 C 0.11 5.52 5.19 86.86 0.45 5.97 16 25 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.10 1.55 8.03 -2.39 -0.02 1.53 16 27 H 0.08 2.41 5.40 -2.41 -0.01 2.39 16 28 H 0.12 1.30 8.07 -2.39 -0.02 1.28 16 29 H 0.08 1.68 7.39 -2.38 -0.02 1.66 16 30 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.40 2.75 9.12 -74.06 -0.68 2.08 16 35 H 0.06 2.56 7.67 -2.39 -0.02 2.54 16 36 H 0.08 2.95 7.62 -2.38 -0.02 2.93 16 37 H 0.09 3.46 8.03 -2.39 -0.02 3.45 16 38 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 39 H 0.37 19.58 7.94 -74.06 -0.59 18.99 16 40 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 41 H 0.06 3.50 7.12 -2.39 -0.02 3.48 16 42 H 0.05 2.69 8.03 -2.39 -0.02 2.67 16 Total: -1.00 -66.63 345.67 -1.69 -68.32 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: -0.21 Total: 35.28 kcal Atomic # 6 Polarization: 29.86 SS G_CDS: 5.49 Total: 35.36 kcal Atomic # 7 Polarization: -89.37 SS G_CDS: -4.91 Total: -94.28 kcal Atomic # 8 Polarization: -83.84 SS G_CDS: -4.09 Total: -87.93 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -66.63 -1.69 -68.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118249369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.356 kcal (2) G-P(sol) polarization free energy of solvation -66.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds