Wall clock time and date at job start Tue Mar 31 2020 03:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00133 * 2 1 4 4 H 1.48498 * 109.47136 * 270.00366 * 3 2 1 5 5 H 1.48504 * 109.46915 * 30.00445 * 3 2 1 6 6 H 1.48503 * 109.47098 * 150.00300 * 3 2 1 7 7 C 1.38815 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00097 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99976 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99838 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46748 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 11 15 15 O 1.21483 * 120.00334 * 359.72053 * 14 13 12 16 16 C 1.48380 * 119.99690 * 179.72343 * 14 13 12 17 17 C 1.40211 * 119.21793 * 179.97438 * 16 14 13 18 18 C 1.36645 * 119.90606 * 179.97438 * 17 16 14 19 19 C 1.40556 * 118.10826 * 0.02562 * 18 17 16 20 20 C 1.40408 * 122.06433 * 180.02562 * 19 18 17 21 21 N 1.31240 * 119.87286 * 179.97438 * 20 19 18 22 22 C 1.32607 * 122.68757 * 359.95627 * 21 20 19 23 23 C 1.36100 * 121.99045 * 0.04473 * 22 21 20 24 24 C 1.40954 * 118.76723 * 359.97438 * 23 22 21 25 25 N 1.31985 * 119.22227 * 359.72659 * 16 14 13 26 26 H 0.96996 * 119.99959 * 359.97438 * 1 2 3 27 27 H 0.96992 * 120.00189 * 0.02562 * 9 7 2 28 28 H 1.08995 * 109.46761 * 60.00109 * 10 9 7 29 29 H 1.09007 * 109.46829 * 300.00128 * 10 9 7 30 30 H 1.08995 * 109.47672 * 60.00334 * 11 10 9 31 31 H 1.09006 * 109.46819 * 299.99764 * 11 10 9 32 32 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 33 33 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 34 34 H 0.97001 * 119.99790 * 359.97438 * 13 12 11 35 35 H 1.08002 * 120.04652 * 0.02562 * 17 16 14 36 36 H 1.08001 * 120.94454 * 180.02562 * 18 17 16 37 37 H 1.08003 * 120.06156 * 359.97438 * 20 19 18 38 38 H 1.07996 * 119.00277 * 180.02562 * 22 21 20 39 39 H 1.07994 * 120.61733 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1914 -0.0011 12 6 6.3814 -3.5164 -0.0017 13 7 7.8217 -3.2487 -0.0023 14 6 8.6974 -4.2732 -0.0086 15 8 8.2925 -5.4186 -0.0087 16 6 10.1562 -4.0021 -0.0155 17 6 11.0527 -5.0801 -0.0214 18 6 12.3991 -4.8466 -0.0283 19 6 12.8396 -3.5118 -0.0285 20 6 14.2032 -3.1770 -0.0359 21 7 14.5666 -1.9159 -0.0363 22 6 13.6925 -0.9187 -0.0309 23 6 12.3492 -1.1374 -0.0236 24 6 11.8782 -2.4659 -0.0223 25 7 10.5792 -2.7518 -0.0208 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3622 -0.0007 28 1 3.8484 -3.0427 -0.8908 29 1 3.8491 -3.0424 0.8892 30 1 5.8797 -1.6199 0.8889 31 1 5.8796 -1.6198 -0.8911 32 1 6.1179 -4.0876 -0.8920 33 1 6.1181 -4.0884 0.8880 34 1 8.1450 -2.3342 -0.0027 35 1 10.6797 -6.0936 -0.0214 36 1 13.1045 -5.6643 -0.0334 37 1 14.9515 -3.9557 -0.0411 38 1 14.0576 0.0977 -0.0321 39 1 11.6570 -0.3084 -0.0189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167309218.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:19 Heat of formation + Delta-G solvation = 42.898012 kcal Electronic energy + Delta-G solvation = -22153.837493 eV Core-core repulsion = 18675.805387 eV Total energy + Delta-G solvation = -3478.032107 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.80643 -39.98939 -38.22117 -36.26992 -34.69013 -34.15700 -32.46098 -31.82902 -30.98869 -30.04748 -26.72367 -25.22059 -24.56041 -23.24031 -22.37600 -21.40802 -20.98545 -19.18086 -18.56591 -17.79132 -17.46686 -16.48746 -16.10526 -16.01788 -15.35667 -15.30757 -14.89884 -14.74128 -14.47762 -14.36319 -13.89928 -13.63777 -13.37420 -13.22152 -12.82974 -12.79693 -12.54385 -12.04911 -11.30273 -11.23934 -11.06235 -10.94588 -10.72961 -10.67224 -10.32590 -10.16384 -9.94370 -9.87666 -9.60551 -9.22430 -9.08857 -8.91442 -7.25713 -5.77861 -3.14067 -0.51790 -0.00317 1.25193 1.97705 2.73879 2.87892 3.36083 3.38524 3.43305 3.44337 3.54558 3.76959 3.91183 4.09102 4.14270 4.28990 4.57797 4.60002 4.74526 4.88551 5.02136 5.09456 5.16225 5.18559 5.33069 5.45170 5.47158 5.52360 5.73433 5.76123 5.88209 5.91522 6.01234 6.10383 6.24330 6.66312 6.69590 6.94434 7.30900 7.32751 7.87585 7.98117 8.40919 9.19585 9.91708 10.11112 11.40455 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.021427 B = 0.002456 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.427454 B =11397.022356 C =12677.684162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.161 3.839 11 C -0.143 4.143 12 C 0.120 3.880 13 N -0.703 5.703 14 C 0.563 3.437 15 O -0.526 6.526 16 C 0.144 3.856 17 C -0.131 4.131 18 C -0.036 4.036 19 C -0.155 4.155 20 C 0.160 3.840 21 N -0.483 5.483 22 C 0.089 3.911 23 C -0.134 4.134 24 C 0.153 3.847 25 N -0.448 5.448 26 H 0.260 0.740 27 H 0.361 0.639 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.411 0.589 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.170 0.830 38 H 0.163 0.837 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.475 -7.612 -0.060 33.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.403 5.403 10 C 0.033 3.967 11 C -0.181 4.181 12 C -0.004 4.004 13 N -0.354 5.354 14 C 0.346 3.654 15 O -0.401 6.401 16 C -0.012 4.012 17 C -0.151 4.151 18 C -0.064 4.064 19 C -0.159 4.159 20 C -0.014 4.014 21 N -0.191 5.191 22 C -0.055 4.055 23 C -0.154 4.154 24 C 0.025 3.975 25 N -0.160 5.160 26 H 0.070 0.930 27 H 0.193 0.807 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.248 0.752 35 H 0.175 0.825 36 H 0.172 0.828 37 H 0.187 0.813 38 H 0.180 0.820 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 32.177 -7.366 -0.062 33.009 hybrid contribution 0.324 0.891 0.012 0.948 sum 32.501 -6.475 -0.050 33.140 Atomic orbital electron populations 1.69704 1.05099 1.25854 1.57497 1.24697 0.95282 0.97282 1.02016 0.86514 0.79164 0.84878 0.77756 1.21061 1.21702 1.20358 1.19069 0.80552 0.94830 1.43093 0.89130 1.42687 1.04124 1.02153 1.91303 1.20495 0.87514 0.89561 0.99125 1.22005 0.97163 0.96081 1.02836 1.21473 0.77503 0.98289 1.03098 1.45953 1.07022 1.09889 1.72500 1.17874 0.84402 0.85374 0.77711 1.90812 1.78708 1.20854 1.49765 1.21634 0.95154 0.89142 0.95243 1.21853 0.92997 1.01302 0.98991 1.21482 0.96008 0.95473 0.93458 1.19970 0.96586 0.95220 1.04161 1.23283 0.92411 0.93874 0.91832 1.67510 1.39666 1.00364 1.11517 1.22322 0.89043 0.98763 0.95343 1.21843 0.97347 0.95447 1.00778 1.18876 0.88280 0.93962 0.96429 1.67871 1.16043 1.20833 1.11211 0.93029 0.80665 0.95098 0.95168 0.91186 0.91185 0.90680 0.90674 0.75245 0.82508 0.82774 0.81302 0.81997 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.50 13.97 55.49 0.78 -28.73 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 22.07 27.74 -169.99 -4.71 17.36 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 7 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.76 -17.99 5.41 -59.90 -0.32 -18.31 16 10 C 0.16 3.02 6.26 -4.04 -0.03 2.99 16 11 C -0.14 -2.01 5.44 -26.73 -0.15 -2.16 16 12 C 0.12 1.52 5.67 -4.04 -0.02 1.49 16 13 N -0.70 -8.21 5.54 -61.08 -0.34 -8.54 16 14 C 0.56 7.01 7.82 -12.08 -0.09 6.92 16 15 O -0.53 -7.85 16.28 5.38 0.09 -7.76 16 16 C 0.14 1.51 6.75 -82.88 -0.56 0.95 16 17 C -0.13 -1.06 9.54 -39.42 -0.38 -1.44 16 18 C -0.04 -0.21 9.92 -39.28 -0.39 -0.60 16 19 C -0.16 -1.16 5.75 -106.74 -0.61 -1.78 16 20 C 0.16 1.00 11.05 -16.99 -0.19 0.81 16 21 N -0.48 -3.82 10.30 -13.18 -0.14 -3.95 16 22 C 0.09 0.62 11.06 -17.99 -0.20 0.42 16 23 C -0.13 -1.03 10.08 -39.32 -0.40 -1.42 16 24 C 0.15 1.42 6.63 -84.86 -0.56 0.86 16 25 N -0.45 -4.67 9.50 -7.49 -0.07 -4.74 16 26 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 27 H 0.36 8.27 5.53 -40.82 -0.23 8.05 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.41 4.29 7.78 -40.82 -0.32 3.97 16 35 H 0.16 1.13 7.60 -52.49 -0.40 0.73 16 36 H 0.15 0.31 8.06 -52.49 -0.42 -0.11 16 37 H 0.17 0.46 8.06 -52.48 -0.42 0.04 16 38 H 0.16 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 339.77 15.07 5.12 5.12 Total: -1.00 -35.36 339.77 -8.19 -43.55 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -4.76 Total: 6.14 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -3.83 Total: -0.14 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -0.09 Total: -64.27 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.09 Total: -7.76 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.36 -8.19 -43.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167309218.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.451 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds