Wall clock time and date at job start Tue Mar 31 2020 03:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00133 * 2 1 4 4 H 1.48498 * 109.47136 * 270.00366 * 3 2 1 5 5 H 1.48504 * 109.46915 * 30.00445 * 3 2 1 6 6 H 1.48503 * 109.47098 * 150.00300 * 3 2 1 7 7 C 1.38815 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00097 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99976 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99838 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46748 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 11 15 15 O 1.21483 * 120.00334 * 359.72053 * 14 13 12 16 16 C 1.48380 * 119.99690 * 179.72343 * 14 13 12 17 17 C 1.40211 * 119.21793 * 179.97438 * 16 14 13 18 18 C 1.36645 * 119.90606 * 179.97438 * 17 16 14 19 19 C 1.40556 * 118.10826 * 0.02562 * 18 17 16 20 20 C 1.40408 * 122.06433 * 180.02562 * 19 18 17 21 21 N 1.31240 * 119.87286 * 179.97438 * 20 19 18 22 22 C 1.32607 * 122.68757 * 359.95627 * 21 20 19 23 23 C 1.36100 * 121.99045 * 0.04473 * 22 21 20 24 24 C 1.40954 * 118.76723 * 359.97438 * 23 22 21 25 25 N 1.31985 * 119.22227 * 359.72659 * 16 14 13 26 26 H 0.96996 * 119.99959 * 359.97438 * 1 2 3 27 27 H 0.96992 * 120.00189 * 0.02562 * 9 7 2 28 28 H 1.08995 * 109.46761 * 60.00109 * 10 9 7 29 29 H 1.09007 * 109.46829 * 300.00128 * 10 9 7 30 30 H 1.08995 * 109.47672 * 60.00334 * 11 10 9 31 31 H 1.09006 * 109.46819 * 299.99764 * 11 10 9 32 32 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 33 33 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 34 34 H 0.97001 * 119.99790 * 359.97438 * 13 12 11 35 35 H 1.08002 * 120.04652 * 0.02562 * 17 16 14 36 36 H 1.08001 * 120.94454 * 180.02562 * 18 17 16 37 37 H 1.08003 * 120.06156 * 359.97438 * 20 19 18 38 38 H 1.07996 * 119.00277 * 180.02562 * 22 21 20 39 39 H 1.07994 * 120.61733 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1914 -0.0011 12 6 6.3814 -3.5164 -0.0017 13 7 7.8217 -3.2487 -0.0023 14 6 8.6974 -4.2732 -0.0086 15 8 8.2925 -5.4186 -0.0087 16 6 10.1562 -4.0021 -0.0155 17 6 11.0527 -5.0801 -0.0214 18 6 12.3991 -4.8466 -0.0283 19 6 12.8396 -3.5118 -0.0285 20 6 14.2032 -3.1770 -0.0359 21 7 14.5666 -1.9159 -0.0363 22 6 13.6925 -0.9187 -0.0309 23 6 12.3492 -1.1374 -0.0236 24 6 11.8782 -2.4659 -0.0223 25 7 10.5792 -2.7518 -0.0208 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3622 -0.0007 28 1 3.8484 -3.0427 -0.8908 29 1 3.8491 -3.0424 0.8892 30 1 5.8797 -1.6199 0.8889 31 1 5.8796 -1.6198 -0.8911 32 1 6.1179 -4.0876 -0.8920 33 1 6.1181 -4.0884 0.8880 34 1 8.1450 -2.3342 -0.0027 35 1 10.6797 -6.0936 -0.0214 36 1 13.1045 -5.6643 -0.0334 37 1 14.9515 -3.9557 -0.0411 38 1 14.0576 0.0977 -0.0321 39 1 11.6570 -0.3084 -0.0189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167309218.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:18 Heat of formation + Delta-G solvation = 16.351347 kcal Electronic energy + Delta-G solvation = -22154.988643 eV Core-core repulsion = 18675.805387 eV Total energy + Delta-G solvation = -3479.183256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.39500 -40.85602 -38.87170 -37.67155 -36.10243 -34.80972 -33.92281 -32.91444 -31.65856 -31.46395 -27.80098 -26.34200 -25.26930 -24.04247 -23.73450 -22.72408 -22.03749 -19.94924 -19.62836 -19.13648 -18.34242 -17.22860 -17.06794 -17.01521 -16.52270 -16.15172 -15.91459 -15.66379 -15.44182 -15.38373 -15.19633 -14.81988 -14.32231 -14.10983 -14.04006 -13.79725 -13.65491 -13.34559 -12.89760 -12.58893 -12.56365 -12.13106 -12.03271 -11.82870 -11.82336 -11.58554 -10.98981 -10.97467 -10.56945 -10.54292 -10.19492 -9.60363 -9.32769 -8.04129 -5.39003 -1.10093 -0.56476 0.70807 1.27000 1.37705 1.42414 1.49725 1.85209 2.15837 2.48061 2.74185 2.96001 3.26981 3.34527 3.43116 3.50485 3.54608 3.58846 3.76010 4.00741 4.04123 4.20053 4.23060 4.26832 4.51741 4.64079 4.67014 4.68512 4.75113 4.83085 4.83655 4.93449 5.17728 5.26060 5.26131 5.29081 5.52294 5.73842 6.18315 6.19582 6.49834 6.83690 6.95282 7.06121 7.81009 8.01185 9.17269 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.021427 B = 0.002456 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.427454 B =11397.022356 C =12677.684162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.068 4.068 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.248 1.248 7 C -0.241 4.241 8 H 0.055 0.945 9 N -0.759 5.759 10 C 0.155 3.845 11 C -0.124 4.124 12 C 0.128 3.872 13 N -0.698 5.698 14 C 0.562 3.438 15 O -0.557 6.557 16 C 0.125 3.875 17 C -0.146 4.146 18 C -0.011 4.011 19 C -0.165 4.165 20 C 0.170 3.830 21 N -0.505 5.505 22 C 0.091 3.909 23 C -0.149 4.149 24 C 0.129 3.871 25 N -0.465 5.465 26 H 0.259 0.741 27 H 0.368 0.632 28 H 0.029 0.971 29 H 0.027 0.973 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.418 0.582 35 H 0.162 0.838 36 H 0.200 0.800 37 H 0.208 0.792 38 H 0.184 0.816 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.408 -7.192 -0.044 37.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.259 4.259 3 Si 0.788 3.212 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.172 1.172 7 C -0.371 4.371 8 H 0.073 0.927 9 N -0.406 5.406 10 C 0.028 3.972 11 C -0.162 4.162 12 C 0.004 3.996 13 N -0.349 5.349 14 C 0.347 3.653 15 O -0.435 6.435 16 C -0.029 4.029 17 C -0.167 4.167 18 C -0.038 4.038 19 C -0.169 4.169 20 C -0.004 4.004 21 N -0.213 5.213 22 C -0.052 4.052 23 C -0.170 4.170 24 C 0.001 3.999 25 N -0.177 5.177 26 H 0.067 0.933 27 H 0.201 0.799 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.256 0.744 35 H 0.180 0.820 36 H 0.217 0.783 37 H 0.225 0.775 38 H 0.201 0.799 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 36.162 -6.955 -0.045 36.824 hybrid contribution -0.836 0.657 0.002 1.064 sum 35.326 -6.297 -0.043 35.883 Atomic orbital electron populations 1.69899 1.07265 1.26848 1.59445 1.25616 0.96251 1.01657 1.02391 0.85316 0.78696 0.78989 0.78210 1.20247 1.22235 1.17202 1.19051 0.82771 0.93568 1.41756 0.92707 1.42676 1.02523 1.04236 1.91123 1.20655 0.90208 0.87569 0.98734 1.21773 0.93695 0.96938 1.03824 1.21262 0.78138 0.97325 1.02853 1.45854 1.06455 1.10304 1.72238 1.18211 0.85444 0.84869 0.76781 1.90784 1.79488 1.21947 1.51295 1.21454 0.94156 0.90184 0.97073 1.21978 0.93774 1.00858 1.00076 1.21951 0.95686 0.96027 0.90179 1.20237 0.96978 0.95539 1.04194 1.23905 0.92558 0.94258 0.89631 1.67601 1.40055 1.01165 1.12498 1.22691 0.88708 0.99774 0.94012 1.21981 0.97930 0.95256 1.01798 1.19249 0.88339 0.95291 0.97012 1.67770 1.17022 1.20853 1.12102 0.93253 0.79853 0.95337 0.95448 0.90235 0.90129 0.91013 0.91027 0.74424 0.81991 0.78267 0.77534 0.79859 0.82507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.76 13.97 21.65 0.30 -63.46 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.96 45.23 27.74 68.60 1.90 47.13 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.25 -10.32 6.52 99.48 0.65 -9.68 16 7 C -0.24 -13.95 10.47 84.03 0.88 -13.07 16 8 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 9 N -0.76 -35.43 5.41 -343.44 -1.86 -37.29 16 10 C 0.15 5.73 6.26 86.38 0.54 6.27 16 11 C -0.12 -3.30 5.44 30.59 0.17 -3.14 16 12 C 0.13 3.15 5.67 86.38 0.49 3.64 16 13 N -0.70 -15.83 5.54 -465.45 -2.58 -18.41 16 14 C 0.56 13.91 7.82 86.94 0.68 14.59 16 15 O -0.56 -16.75 16.28 -3.66 -0.06 -16.81 16 16 C 0.13 2.57 6.75 42.30 0.29 2.85 16 17 C -0.15 -2.15 9.54 22.38 0.21 -1.94 16 18 C -0.01 -0.09 9.92 22.46 0.22 0.13 16 19 C -0.17 -2.06 5.75 -21.24 -0.12 -2.18 16 20 C 0.17 1.57 11.05 85.31 0.94 2.51 16 21 N -0.51 -6.70 10.30 -195.61 -2.02 -8.72 16 22 C 0.09 1.10 11.06 84.08 0.93 2.03 16 23 C -0.15 -2.13 10.08 22.44 0.23 -1.90 16 24 C 0.13 2.26 6.63 40.58 0.27 2.53 16 25 N -0.47 -9.41 9.50 -177.61 -1.69 -11.10 16 26 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 27 H 0.37 16.01 5.53 -92.71 -0.51 15.50 16 28 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.42 8.32 7.78 -92.71 -0.72 7.60 16 35 H 0.16 2.14 7.60 -2.91 -0.02 2.12 16 36 H 0.20 -0.20 8.06 -2.91 -0.02 -0.23 16 37 H 0.21 0.14 8.06 -2.91 -0.02 0.11 16 38 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 39 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -78.51 339.77 0.00 -78.52 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -0.20 Total: 21.38 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 6.19 Total: 8.75 kcal Atomic # 7 Polarization: -131.14 SS G_CDS: -7.84 Total: -138.97 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.06 Total: -16.81 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.90 Total: 47.13 kcal Total: -78.51 0.00 -78.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167309218.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.867 kcal (2) G-P(sol) polarization free energy of solvation -78.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds