Wall clock time and date at job start Tue Mar 31 2020 03:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35663 * 117.00371 * 2 1 4 4 C 1.38085 * 120.21762 * 0.02562 * 3 2 1 5 5 C 1.39147 * 119.98496 * 179.97438 * 4 3 2 6 6 N 1.39355 * 119.78736 * 179.97438 * 5 4 3 7 7 C 1.35937 * 120.34358 * 309.72025 * 6 5 4 8 8 N 1.30397 * 121.37152 * 179.72381 * 7 6 5 9 9 C 1.33758 * 122.06877 * 0.54891 * 8 7 6 10 10 C 1.50696 * 119.76068 * 179.72981 * 9 8 7 11 11 N 1.46902 * 109.46844 * 275.02074 * 10 9 8 12 12 C 1.35663 * 120.47962 * 359.74332 * 9 8 7 13 13 C 1.38304 * 120.34211 * 130.00375 * 6 5 4 14 14 N 1.31444 * 120.93339 * 0.02562 * 13 6 5 15 15 C 1.39642 * 120.42078 * 359.97438 * 5 4 3 16 16 C 1.36226 * 120.44400 * 0.02562 * 15 5 4 17 17 C 1.40860 * 120.00452 * 359.74355 * 16 15 5 18 18 C 1.40942 * 120.21181 * 180.27678 * 17 16 15 19 19 H 1.07998 * 120.00053 * 204.96163 * 18 17 16 20 20 C 1.39914 * 119.99967 * 24.96299 * 18 17 16 21 21 N 1.30899 * 119.99698 * 17.68850 * 20 18 17 22 22 Si 1.86799 * 120.00132 * 197.69663 * 20 18 17 23 23 H 1.48493 * 109.47350 * 89.99575 * 22 20 18 24 24 H 1.48498 * 109.47044 * 210.00184 * 22 20 18 25 25 H 1.48500 * 109.46791 * 329.99547 * 22 20 18 26 26 H 1.08998 * 109.47474 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47092 * 60.00009 * 1 2 3 28 28 H 1.09003 * 109.47097 * 300.00456 * 1 2 3 29 29 H 1.08007 * 120.00683 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.31265 * 359.97438 * 7 6 5 31 31 H 1.09004 * 109.47086 * 35.01834 * 10 9 8 32 32 H 1.09000 * 109.47565 * 155.01787 * 10 9 8 33 33 H 1.00907 * 110.99684 * 180.02562 * 11 10 9 34 34 H 1.00898 * 110.99767 * 303.94519 * 11 10 9 35 35 H 1.08001 * 120.68555 * 179.97438 * 12 9 8 36 36 H 0.96998 * 119.99856 * 180.02562 * 14 13 6 37 37 H 1.07997 * 119.77667 * 180.02562 * 15 5 4 38 38 H 1.07999 * 119.99976 * 180.02562 * 16 15 5 39 39 H 0.96995 * 119.99572 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2974 2.3697 0.0005 5 6 1.9342 3.6069 0.0011 6 7 1.1757 4.7759 0.0011 7 6 0.1734 4.9442 -0.9016 8 7 -0.5523 6.0275 -0.9162 9 6 -0.3462 7.0319 -0.0573 10 6 -1.2123 8.2633 -0.1245 11 7 -0.6679 9.1908 -1.1251 12 6 0.6371 6.9503 0.8738 13 6 1.4388 5.7794 0.9157 14 7 2.4042 5.6528 1.7987 15 6 3.3285 3.6845 0.0016 16 6 4.0829 2.5502 0.0011 17 6 3.4573 1.2881 0.0055 18 6 4.2336 0.1118 0.0108 19 1 3.8237 -0.8075 -0.3806 20 6 5.5353 0.1350 0.5234 21 7 5.9157 1.1182 1.2992 22 14 6.7303 -1.2370 0.1003 23 1 7.4758 -0.8812 -1.1337 24 1 7.6872 -1.4230 1.2205 25 1 5.9777 -2.4977 -0.1222 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 0.2186 2.3175 0.0005 30 1 -0.0288 4.1627 -1.6191 31 1 -2.2263 7.9793 -0.4060 32 1 -1.2288 8.7497 0.8508 33 1 -1.2314 10.0255 -1.1889 34 1 0.2937 9.4188 -0.9214 35 1 0.8067 7.7595 1.5687 36 1 2.5767 6.3650 2.4342 37 1 3.8119 4.6502 0.0024 38 1 5.1607 2.6185 0.0019 39 1 6.8180 1.1341 1.6548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167357882.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:05 Heat of formation + Delta-G solvation = 40.896254 kcal Electronic energy + Delta-G solvation = -23676.268108 eV Core-core repulsion = 20198.149199 eV Total energy + Delta-G solvation = -3478.118909 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.27527 -40.37995 -38.30911 -37.07030 -35.68110 -35.47736 -34.03384 -31.24739 -30.76740 -30.55707 -28.07252 -27.58164 -26.01756 -25.27668 -23.32925 -22.63584 -21.92347 -19.52138 -19.31680 -18.64093 -17.94513 -17.31933 -17.05930 -16.72951 -16.36162 -16.19579 -16.01012 -15.78716 -15.66548 -15.25396 -14.98620 -14.61399 -14.18028 -13.84260 -13.56138 -13.41572 -13.05622 -12.88604 -12.80485 -12.60746 -12.49341 -12.18541 -11.98588 -11.74427 -11.55106 -11.26953 -10.99071 -10.91021 -10.18087 -9.65828 -9.46946 -8.98565 -8.67179 -8.51697 -6.24205 -0.28885 0.75606 0.98293 1.07379 1.40172 1.49281 1.54253 1.63585 2.21424 2.55201 2.71346 2.89301 3.14096 3.53912 3.60216 3.82411 3.94761 4.08917 4.20783 4.39310 4.45513 4.46662 4.52118 4.54372 4.60648 4.78419 4.83968 4.95413 5.06317 5.10780 5.21599 5.35466 5.53726 5.56349 5.82841 6.00630 6.12743 6.14531 6.28242 6.45901 6.57511 6.72547 6.83779 6.98462 7.16160 7.44521 8.28200 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.023044 B = 0.003833 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.759498 B = 7304.090626 C = 8135.262486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.333 6.333 3 C 0.014 3.986 4 C -0.161 4.161 5 C 0.000 4.000 6 N -0.428 5.428 7 C 0.385 3.615 8 N -0.557 5.557 9 C 0.168 3.832 10 C 0.118 3.882 11 N -0.849 5.849 12 C -0.287 4.287 13 C 0.399 3.601 14 N -0.798 5.798 15 C -0.071 4.071 16 C -0.166 4.166 17 C 0.076 3.924 18 C -0.465 4.465 19 H 0.080 0.920 20 C 0.032 3.968 21 N -0.816 5.816 22 Si 0.985 3.015 23 H -0.259 1.259 24 H -0.269 1.269 25 H -0.257 1.257 26 H 0.113 0.887 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.134 0.866 30 H 0.226 0.774 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.360 0.640 34 H 0.344 0.656 35 H 0.157 0.843 36 H 0.346 0.654 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.149 8.575 -3.048 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.248 6.248 3 C -0.031 4.031 4 C -0.182 4.182 5 C -0.092 4.092 6 N -0.123 5.123 7 C 0.103 3.897 8 N -0.279 5.279 9 C 0.046 3.954 10 C -0.013 4.013 11 N -0.382 5.382 12 C -0.317 4.317 13 C 0.128 3.872 14 N -0.431 5.431 15 C -0.091 4.091 16 C -0.186 4.186 17 C 0.073 3.927 18 C -0.494 4.494 19 H 0.099 0.901 20 C -0.184 4.184 21 N -0.441 5.441 22 Si 0.805 3.195 23 H -0.184 1.184 24 H -0.194 1.194 25 H -0.181 1.181 26 H 0.131 0.869 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.152 0.848 30 H 0.242 0.758 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.176 0.824 34 H 0.157 0.843 35 H 0.174 0.826 36 H 0.163 0.837 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.916 7.310 -3.664 13.639 hybrid contribution 1.049 1.196 1.903 2.480 sum -9.867 8.507 -1.761 13.147 Atomic orbital electron populations 1.23131 0.78422 1.04474 1.01080 1.85949 1.21602 1.27056 1.90177 1.18929 0.91733 0.83677 1.08795 1.20587 0.98796 0.90224 1.08546 1.16741 0.89639 0.83389 1.19480 1.42452 1.28754 1.14562 1.26554 1.25775 0.80719 0.95551 0.87693 1.68120 1.29826 1.01756 1.28216 1.21104 0.92035 0.94087 0.88125 1.20607 0.97266 0.88205 0.95230 1.58512 1.07700 1.20145 1.51794 1.22552 1.02145 0.99444 1.07543 1.19245 0.92200 0.86655 0.89140 1.69801 1.22875 1.37800 1.12650 1.20104 0.92156 0.97031 0.99794 1.20563 0.99062 0.90863 1.08105 1.17476 0.88986 0.94322 0.91942 1.19681 0.98026 0.96670 1.35005 0.90138 1.26841 1.00129 0.99535 0.91875 1.69923 1.20142 1.32120 1.21891 0.85153 0.77206 0.78092 0.79024 1.18374 1.19364 1.18102 0.86918 0.92003 0.93695 0.84802 0.75805 0.88786 0.91653 0.82409 0.84345 0.82571 0.83702 0.89189 0.87267 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 9.81 113.37 1.11 1.82 16 2 O -0.33 -14.44 9.78 -89.79 -0.88 -15.32 16 3 C 0.01 0.66 6.72 23.03 0.15 0.82 16 4 C -0.16 -6.66 8.34 22.45 0.19 -6.47 16 5 C 0.00 -0.01 5.45 38.50 0.21 0.20 16 6 N -0.43 -15.68 2.82 -347.21 -0.98 -16.66 16 7 C 0.39 11.38 11.09 180.01 2.00 13.38 16 8 N -0.56 -15.76 10.28 -187.26 -1.93 -17.69 16 9 C 0.17 4.36 6.27 41.67 0.26 4.62 16 10 C 0.12 2.13 7.10 85.56 0.61 2.73 16 11 N -0.85 -14.10 9.61 -190.00 -1.83 -15.93 16 12 C -0.29 -8.15 9.56 22.60 0.22 -7.94 16 13 C 0.40 14.67 7.31 134.29 0.98 15.65 16 14 N -0.80 -32.72 12.07 -54.48 -0.66 -33.38 16 15 C -0.07 -3.44 8.61 22.14 0.19 -3.25 16 16 C -0.17 -8.80 8.62 22.44 0.19 -8.61 16 17 C 0.08 4.06 5.58 -21.18 -0.12 3.94 16 18 C -0.47 -24.97 8.70 23.34 0.20 -24.76 16 19 H 0.08 4.26 7.64 -2.91 -0.02 4.23 16 20 C 0.03 1.61 5.13 85.24 0.44 2.05 16 21 N -0.82 -42.90 10.97 21.83 0.24 -42.66 16 22 Si 0.98 38.02 29.60 68.60 2.03 40.05 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 24 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 25 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 26 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 27 H 0.06 1.56 7.66 -2.39 -0.02 1.55 16 28 H 0.04 1.28 7.66 -2.39 -0.02 1.26 16 29 H 0.13 4.54 6.16 -2.91 -0.02 4.52 16 30 H 0.23 5.17 7.86 -2.91 -0.02 5.15 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 0.90 8.04 -2.39 -0.02 0.88 16 33 H 0.36 3.96 9.08 -89.69 -0.81 3.15 16 34 H 0.34 5.56 8.98 -89.70 -0.81 4.75 16 35 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.35 12.39 8.77 -92.71 -0.81 11.57 16 37 H 0.09 4.42 7.45 -2.91 -0.02 4.40 16 38 H 0.11 6.10 6.17 -2.91 -0.02 6.08 16 39 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 Total: -1.00 -67.48 332.86 1.33 -66.14 By element: Atomic # 1 Polarization: 42.57 SS G_CDS: -1.30 Total: 41.27 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 6.63 Total: -5.83 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -5.15 Total: -126.31 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.88 Total: -15.32 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -67.48 1.33 -66.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167357882.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.039 kcal (2) G-P(sol) polarization free energy of solvation -67.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds