Wall clock time and date at job start Tue Mar 31 2020 04:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48499 * 109.47443 * 270.00316 * 3 2 1 5 5 H 1.48496 * 109.47119 * 30.00671 * 3 2 1 6 6 H 1.48503 * 109.46856 * 150.00157 * 3 2 1 7 7 C 1.38815 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99821 * 359.97438 * 7 2 1 9 9 N 1.36929 * 119.99998 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99988 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47373 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47000 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.46626 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46623 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.46997 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47373 * 180.02562 * 15 14 13 17 17 C 1.34767 * 119.99818 * 179.97438 * 16 15 14 18 18 O 1.21282 * 120.00273 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00042 * 179.97438 * 17 16 15 20 20 H 1.09007 * 109.52578 * 305.13316 * 19 17 16 21 21 C 1.53139 * 109.52288 * 65.32584 * 19 17 16 22 22 O 1.43076 * 109.15185 * 175.21816 * 21 19 17 23 23 C 1.43082 * 113.59195 * 302.04939 * 22 21 19 24 24 C 1.53136 * 109.14873 * 57.95098 * 23 22 21 25 25 O 1.43072 * 109.52813 * 185.00214 * 19 17 16 26 26 H 0.96997 * 119.99631 * 359.97438 * 1 2 3 27 27 H 0.97003 * 120.00480 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.47042 * 59.99809 * 10 9 7 29 29 H 1.09000 * 109.47175 * 299.99767 * 10 9 7 30 30 H 1.08993 * 109.46765 * 59.99662 * 11 10 9 31 31 H 1.09000 * 109.46866 * 300.00062 * 11 10 9 32 32 H 1.08993 * 109.47839 * 60.00073 * 12 11 10 33 33 H 1.09000 * 109.47160 * 299.99635 * 12 11 10 34 34 H 1.09000 * 109.47050 * 299.99699 * 13 12 11 35 35 H 1.09001 * 109.46801 * 59.99811 * 13 12 11 36 36 H 1.09000 * 109.47486 * 299.99829 * 14 13 12 37 37 H 1.09001 * 109.47362 * 60.00551 * 14 13 12 38 38 H 1.09000 * 109.46866 * 300.00212 * 15 14 13 39 39 H 1.08996 * 109.47261 * 59.99820 * 15 14 13 40 40 H 0.97003 * 119.99531 * 0.02562 * 16 15 14 41 41 H 1.08995 * 109.53137 * 295.12039 * 21 19 17 42 42 H 1.09000 * 109.52234 * 55.31920 * 21 19 17 43 43 H 1.09001 * 109.52124 * 298.04783 * 23 22 21 44 44 H 1.09001 * 109.52581 * 177.85600 * 23 22 21 45 45 H 1.09005 * 109.52734 * 184.78559 * 24 23 22 46 46 H 1.09001 * 109.58170 * 64.62549 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6164 -2.1914 -0.0024 12 6 6.3813 -3.5165 -0.0030 13 6 7.8856 -3.2369 -0.0036 14 6 8.6505 -4.5620 -0.0036 15 6 10.1548 -4.2825 -0.0049 16 7 10.8873 -5.5512 -0.0056 17 6 12.2349 -5.5512 -0.0072 18 8 12.8414 -4.5008 -0.0078 19 6 12.9885 -6.8563 -0.0073 20 1 12.6597 -7.4668 0.8337 21 6 12.7209 -7.6016 -1.3180 22 8 13.5255 -8.7840 -1.3583 23 6 14.9282 -8.5264 -1.2426 24 6 15.1956 -7.7811 0.0681 25 8 14.3911 -6.5987 0.1084 26 1 -0.4849 0.8400 0.0004 27 1 3.8647 -0.3622 -0.0014 28 1 3.8483 -3.0427 -0.8908 29 1 3.8491 -3.0423 0.8892 30 1 5.8803 -1.6195 0.8871 31 1 5.8790 -1.6203 -0.8928 32 1 6.1172 -4.0881 -0.8927 33 1 6.1187 -4.0880 0.8872 34 1 8.1485 -2.6652 -0.8937 35 1 8.1492 -2.6655 0.8863 36 1 8.3875 -5.1333 0.8866 37 1 8.3868 -5.1337 -0.8934 38 1 10.4174 -3.7113 -0.8954 39 1 10.4188 -3.7105 0.8845 40 1 10.4022 -6.3912 -0.0055 41 1 11.6675 -7.8759 -1.3728 42 1 12.9754 -6.9591 -2.1609 43 1 15.2567 -7.9150 -2.0830 44 1 15.4732 -9.4704 -1.2427 45 1 16.2492 -7.5068 0.1229 46 1 14.9421 -8.4231 0.9117 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177923726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:54 Heat of formation + Delta-G solvation = -159.344422 kcal Electronic energy + Delta-G solvation = -23327.711183 eV Core-core repulsion = 19637.140610 eV Total energy + Delta-G solvation = -3690.570573 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.58263 -40.05833 -37.98311 -37.18991 -36.76549 -35.38522 -33.81146 -32.94353 -31.68100 -29.48516 -28.22573 -26.24372 -25.36133 -23.60275 -22.84377 -22.27532 -22.06575 -21.33654 -19.61764 -18.72838 -18.15172 -17.65639 -17.10991 -16.94846 -16.67717 -16.57875 -16.38045 -16.02295 -15.83752 -15.62169 -15.15578 -14.88763 -14.55358 -14.21806 -14.14124 -14.07040 -13.48510 -13.34242 -13.29740 -13.02419 -12.69773 -12.64299 -12.46704 -12.07965 -11.99199 -11.87378 -11.84773 -11.80532 -11.68607 -11.49234 -11.32540 -10.97429 -10.89662 -10.34289 -10.18631 -9.30975 -8.04701 -5.38402 1.37148 1.37730 1.40859 1.48492 1.69196 2.47399 2.61554 2.86482 3.26620 3.39319 3.55245 3.62701 3.81442 3.89721 3.93096 4.03225 4.10379 4.20619 4.23246 4.25356 4.31173 4.45350 4.51528 4.59686 4.61886 4.76125 4.77983 4.78211 4.84213 4.97754 4.99596 5.05917 5.15643 5.28808 5.30003 5.39145 5.54190 5.56885 5.73835 5.82223 5.85281 6.19981 6.42653 7.06570 7.09143 7.83666 8.02776 9.16866 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.048162 B = 0.001610 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.232740 B =17383.398665 C =17774.686951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.252 1.252 7 C -0.242 4.242 8 H 0.055 0.945 9 N -0.763 5.763 10 C 0.149 3.851 11 C -0.121 4.121 12 C -0.106 4.106 13 C -0.114 4.114 14 C -0.119 4.119 15 C 0.120 3.880 16 N -0.708 5.708 17 C 0.517 3.483 18 O -0.570 6.570 19 C 0.039 3.961 20 H 0.118 0.882 21 C 0.040 3.960 22 O -0.384 6.384 23 C 0.017 3.983 24 C 0.019 3.981 25 O -0.387 6.387 26 H 0.259 0.741 27 H 0.366 0.634 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.420 0.580 41 H 0.139 0.861 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.134 0.866 45 H 0.125 0.875 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.036 -21.107 -0.984 40.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.257 4.257 3 Si 0.786 3.214 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.176 1.176 7 C -0.373 4.373 8 H 0.073 0.927 9 N -0.409 5.409 10 C 0.023 3.977 11 C -0.159 4.159 12 C -0.144 4.144 13 C -0.152 4.152 14 C -0.156 4.156 15 C -0.004 4.004 16 N -0.363 5.363 17 C 0.303 3.697 18 O -0.449 6.449 19 C -0.022 4.022 20 H 0.135 0.865 21 C -0.037 4.037 22 O -0.303 6.303 23 C -0.059 4.059 24 C -0.057 4.057 25 O -0.306 6.306 26 H 0.067 0.933 27 H 0.199 0.801 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.258 0.742 41 H 0.157 0.843 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.151 0.849 45 H 0.143 0.857 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 34.273 -20.475 -0.983 39.935 hybrid contribution -0.316 0.973 0.056 1.025 sum 33.957 -19.502 -0.927 39.170 Atomic orbital electron populations 1.69894 1.07174 1.26795 1.59566 1.25571 0.96210 1.01462 1.02433 0.85346 0.78612 0.79242 0.78208 1.20271 1.22016 1.17628 1.19097 0.82940 0.93560 1.41665 0.92699 1.42802 1.02536 1.04530 1.91013 1.20881 0.91705 0.87115 0.97954 1.21707 0.92968 0.99220 1.02015 1.21425 0.94268 0.95876 1.02828 1.21456 0.93910 0.97241 1.02587 1.21712 0.91195 0.98450 1.04268 1.21409 0.91974 0.85199 1.01771 1.45809 1.04925 1.11135 1.74381 1.20401 0.83064 0.90293 0.75953 1.90733 1.69173 1.34835 1.50133 1.22678 0.83862 0.93999 1.01667 0.86485 1.23211 0.98534 0.87426 0.94526 1.88119 1.18005 1.30002 1.94153 1.23497 0.82051 1.03171 0.97211 1.23588 0.97107 0.86796 0.98234 1.88195 1.15596 1.32231 1.94593 0.93262 0.80106 0.95911 0.96039 0.92072 0.91906 0.91205 0.91325 0.91697 0.91828 0.89866 0.89681 0.92234 0.92429 0.74238 0.84312 0.92416 0.92131 0.84857 0.85730 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.02 13.97 21.65 0.30 -63.72 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.96 46.11 27.73 68.60 1.90 48.01 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 6 H -0.25 -10.92 6.52 99.48 0.65 -10.27 16 7 C -0.24 -14.23 10.47 84.04 0.88 -13.35 16 8 H 0.05 3.53 8.06 -2.91 -0.02 3.50 16 9 N -0.76 -36.73 5.41 -343.44 -1.86 -38.58 16 10 C 0.15 5.65 6.26 86.38 0.54 6.20 16 11 C -0.12 -3.31 5.33 30.60 0.16 -3.15 16 12 C -0.11 -2.03 5.21 30.60 0.16 -1.87 16 13 C -0.11 -1.71 5.21 30.60 0.16 -1.55 16 14 C -0.12 -1.22 5.33 30.60 0.16 -1.05 16 15 C 0.12 1.64 5.67 86.38 0.49 2.13 16 16 N -0.71 -7.95 5.52 -463.06 -2.56 -10.50 16 17 C 0.52 9.35 7.18 87.66 0.63 9.98 16 18 O -0.57 -16.65 16.51 15.91 0.26 -16.39 16 19 C 0.04 0.51 3.25 29.90 0.10 0.61 16 20 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 21 C 0.04 0.40 6.29 72.03 0.45 0.85 16 22 O -0.38 -4.42 10.85 -136.00 -1.48 -5.90 16 23 C 0.02 0.14 7.05 72.03 0.51 0.64 16 24 C 0.02 0.17 7.05 72.03 0.51 0.68 16 25 O -0.39 -6.99 10.03 -122.90 -1.23 -8.22 16 26 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 27 H 0.37 16.66 5.53 -92.71 -0.51 16.14 16 28 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.42 1.59 8.41 -92.71 -0.78 0.81 16 41 H 0.14 0.50 8.07 -2.39 -0.02 0.48 16 42 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -82.23 375.51 0.17 -82.06 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -0.39 Total: 16.58 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 5.22 Total: -3.35 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -4.11 Total: -112.80 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -2.45 Total: -30.51 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.90 Total: 48.01 kcal Total: -82.23 0.17 -82.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177923726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.281 kcal (2) G-P(sol) polarization free energy of solvation -82.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds