Wall clock time and date at job start Tue Mar 31 2020 04:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.50698 * 119.99870 * 2 1 4 4 C 1.33106 * 119.99779 * 180.02562 * 2 1 3 5 5 F 1.35106 * 119.99714 * 185.20564 * 4 2 1 6 6 C 1.47300 * 120.00417 * 5.20939 * 4 2 1 7 7 O 1.21605 * 120.00012 * 268.44810 * 6 4 2 8 8 N 1.34779 * 119.99886 * 88.44595 * 6 4 2 9 9 C 1.47501 * 118.76096 * 355.02670 * 8 6 4 10 10 C 1.53561 * 111.03425 * 138.38705 * 9 8 6 11 11 C 1.51540 * 109.58291 * 320.02343 * 10 9 8 12 12 O 1.42152 * 108.75541 * 91.39539 * 11 10 9 13 13 C 1.38012 * 119.44360 * 272.77674 * 12 11 10 14 14 H 1.09003 * 109.47016 * 303.42251 * 13 12 11 15 15 C 1.53002 * 109.46952 * 183.43051 * 13 12 11 16 16 N 1.46492 * 109.47243 * 64.98832 * 15 13 12 17 17 C 1.36937 * 120.00082 * 179.72584 * 16 15 13 18 18 H 1.07998 * 119.99676 * 0.27510 * 17 16 15 19 19 C 1.38813 * 120.00171 * 180.27502 * 17 16 15 20 20 N 1.31617 * 119.99833 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00066 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47018 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46961 * 119.99815 * 21 19 17 24 24 H 1.48489 * 109.47183 * 240.00207 * 21 19 17 25 25 C 1.45123 * 118.75339 * 175.04037 * 8 6 4 26 26 H 1.08991 * 109.47013 * 264.86499 * 1 2 3 27 27 H 1.08999 * 109.46641 * 24.86592 * 1 2 3 28 28 H 1.09003 * 109.46765 * 144.86347 * 1 2 3 29 29 H 1.08997 * 109.47192 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47321 * 300.00326 * 3 2 1 31 31 H 1.09004 * 109.47123 * 59.99798 * 3 2 1 32 32 H 1.09003 * 109.16902 * 258.79264 * 9 8 6 33 33 H 1.09004 * 109.16750 * 17.98708 * 9 8 6 34 34 H 1.09005 * 109.45278 * 80.05617 * 10 9 8 35 35 H 1.08996 * 109.45673 * 200.01102 * 10 9 8 36 36 H 1.09004 * 109.59443 * 211.18094 * 11 10 9 37 37 H 1.09004 * 109.58873 * 331.61734 * 11 10 9 38 38 H 1.09004 * 109.47039 * 304.98529 * 15 13 12 39 39 H 1.09003 * 109.46975 * 184.99207 * 15 13 12 40 40 H 0.97001 * 120.00369 * 359.97438 * 16 15 13 41 41 H 0.97001 * 119.99485 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.45751 * 149.23846 * 25 8 6 43 43 H 1.09000 * 109.44960 * 29.28270 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1726 -1.1528 -0.0005 5 9 3.5194 -1.1552 0.1056 6 6 1.4407 -2.4258 -0.1169 7 8 1.0804 -3.0138 0.8847 8 7 1.1702 -2.9388 -1.3335 9 6 1.5206 -2.1505 -2.5300 10 6 2.1256 -3.0451 -3.6217 11 6 3.0508 -4.0644 -2.9882 12 8 2.3056 -5.2395 -2.6972 13 6 1.6385 -5.3389 -1.4931 14 1 2.3449 -5.2039 -0.6741 15 6 0.9881 -6.7194 -1.3829 16 7 2.0302 -7.7478 -1.3350 17 6 1.6844 -9.0687 -1.2301 18 1 0.6433 -9.3525 -1.1872 19 6 2.6721 -10.0428 -1.1789 20 7 3.9409 -9.6968 -1.2317 21 14 2.2004 -11.8445 -1.0351 22 1 0.7209 -11.9672 -0.9950 23 1 2.7267 -12.5890 -2.2071 24 1 2.7783 -12.4096 0.2106 25 6 0.5450 -4.2458 -1.4168 26 1 -0.3633 -0.0920 1.0235 27 1 -0.3632 0.9324 -0.4321 28 1 -0.3633 -0.8404 -0.5915 29 1 3.3322 1.1060 0.0005 30 1 1.9972 1.8767 -0.8899 31 1 1.9972 1.8767 0.8900 32 1 0.6222 -1.6703 -2.9180 33 1 2.2444 -1.3836 -2.2540 34 1 1.3256 -3.5615 -4.1525 35 1 2.6892 -2.4306 -4.3236 36 1 3.8578 -4.3055 -3.6801 37 1 3.4663 -3.6576 -2.0662 38 1 0.3488 -6.8900 -2.2492 39 1 0.3884 -6.7671 -0.4739 40 1 2.9653 -7.4930 -1.3739 41 1 4.6310 -10.3775 -1.1955 42 1 -0.0791 -4.2935 -2.3091 43 1 -0.0717 -4.4100 -0.5332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200239530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:14 Heat of formation + Delta-G solvation = -89.959874 kcal Electronic energy + Delta-G solvation = -25666.900497 eV Core-core repulsion = 21855.878359 eV Total energy + Delta-G solvation = -3811.022138 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.14660 -40.70666 -38.62021 -35.97227 -35.57739 -34.61576 -32.89284 -30.93051 -29.59338 -28.22467 -27.65379 -26.63356 -25.03473 -23.00171 -21.87047 -21.01978 -20.69097 -18.93804 -17.93726 -17.14832 -16.87291 -16.53265 -16.33280 -15.74669 -15.62159 -15.17360 -14.68936 -14.36792 -14.08880 -13.89017 -13.77760 -13.43369 -13.26551 -13.06503 -13.01499 -12.82698 -12.66422 -12.37744 -12.28854 -12.07457 -11.99735 -11.73694 -11.40497 -10.98759 -10.79967 -10.77224 -10.32278 -10.12942 -9.93484 -9.66170 -9.44963 -9.07092 -8.81588 -8.67742 -6.82783 -5.67256 -2.95635 1.14540 2.10464 2.66078 3.49462 3.54293 3.57076 3.77194 3.94630 4.23886 4.44184 4.53477 4.63193 4.69782 4.89401 4.93308 5.07306 5.16107 5.20000 5.21868 5.27651 5.32457 5.42336 5.45009 5.46888 5.52525 5.57104 5.65762 5.80100 5.84268 5.92361 5.96155 6.08239 6.09552 6.33985 6.36405 6.66064 6.78424 6.95356 7.76094 7.77458 7.98715 8.50814 9.62369 10.20431 10.56186 11.55742 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.026216 B = 0.003415 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.789660 B = 8197.026584 C = 8388.439305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.124 4.124 3 C -0.120 4.120 4 C 0.009 3.991 5 F -0.125 7.125 6 C 0.543 3.457 7 O -0.507 6.507 8 N -0.596 5.596 9 C 0.105 3.895 10 C -0.165 4.165 11 C 0.072 3.928 12 O -0.367 6.367 13 C 0.088 3.912 14 H 0.052 0.948 15 C 0.167 3.833 16 N -0.726 5.726 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.015 4.015 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.078 3.922 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.028 0.972 39 H 0.035 0.965 40 H 0.387 0.613 41 H 0.254 0.746 42 H 0.089 0.911 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.905 25.755 -3.328 26.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.126 4.126 3 C -0.177 4.177 4 C -0.014 4.014 5 F -0.104 7.104 6 C 0.328 3.672 7 O -0.382 6.382 8 N -0.329 5.329 9 C -0.017 4.017 10 C -0.204 4.204 11 C -0.005 4.005 12 O -0.285 6.285 13 C 0.028 3.972 14 H 0.070 0.930 15 C 0.038 3.962 16 N -0.371 5.371 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.211 4.211 20 N -0.581 5.581 21 Si 0.739 3.261 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.045 4.045 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.221 0.779 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.181 25.124 -2.920 26.037 hybrid contribution 0.486 -0.564 0.239 0.782 sum -5.695 24.559 -2.682 25.353 Atomic orbital electron populations 1.20787 0.89764 1.03296 1.03481 1.22427 0.97271 0.93832 0.99083 1.20821 1.00252 0.93558 1.03026 1.19228 0.77982 0.94257 1.09903 1.91517 1.28263 1.96948 1.93631 1.18473 0.80344 0.84268 0.84112 1.90883 1.51487 1.59831 1.35954 1.47933 1.60438 1.19100 1.05428 1.22036 1.00460 0.93733 0.85477 1.22502 1.01290 0.98671 0.97909 1.22138 0.93344 0.85680 0.99346 1.86441 1.65536 1.39012 1.37497 1.22294 0.92725 0.95555 0.86627 0.93043 1.20605 0.92193 0.84913 0.98441 1.42235 1.04295 1.01771 1.88758 1.19274 0.92498 0.82997 1.42036 0.91097 1.24746 0.95238 0.97973 1.03145 1.69691 0.98494 1.32140 1.57732 0.86104 0.77421 0.85444 0.77159 1.20557 1.21928 1.21933 1.22560 0.96847 0.80767 1.04340 0.90015 0.90478 0.91302 0.91005 0.90278 0.90485 0.90979 0.90108 0.89703 0.89493 0.89048 0.93496 0.95374 0.94716 0.77931 0.93655 0.89302 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.57 36.01 0.34 -0.52 16 2 C -0.12 -1.10 6.05 -101.13 -0.61 -1.71 16 3 C -0.12 -0.77 10.07 36.00 0.36 -0.41 16 4 C 0.01 0.10 4.95 -37.68 -0.19 -0.08 16 5 F -0.12 -1.64 16.08 2.25 0.04 -1.60 16 6 C 0.54 7.81 5.60 -12.57 -0.07 7.74 16 7 O -0.51 -9.23 16.51 5.27 0.09 -9.14 16 8 N -0.60 -7.48 2.17 -173.80 -0.38 -7.86 16 9 C 0.11 0.96 6.06 -3.20 -0.02 0.94 16 10 C -0.17 -1.60 5.78 -27.18 -0.16 -1.75 16 11 C 0.07 0.97 6.38 36.42 0.23 1.21 16 12 O -0.37 -6.60 9.38 -26.53 -0.25 -6.85 16 13 C 0.09 1.60 2.68 -25.78 -0.07 1.53 16 14 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 15 C 0.17 3.58 5.92 -4.05 -0.02 3.56 16 16 N -0.73 -19.70 5.54 -59.91 -0.33 -20.03 16 17 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 18 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -29.39 13.06 55.49 0.72 -28.66 16 21 Si 0.91 23.15 29.55 -169.99 -5.02 18.12 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 C 0.08 1.11 4.91 -3.83 -0.02 1.09 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.07 0.57 7.03 -51.93 -0.37 0.20 16 29 H 0.07 0.51 7.04 -51.93 -0.37 0.15 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.68 6.24 -51.93 -0.32 0.35 16 34 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.05 0.67 7.40 -51.93 -0.38 0.29 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.39 11.20 7.65 -40.82 -0.31 10.89 16 41 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 43 H 0.10 1.46 7.21 -51.93 -0.37 1.08 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -35.08 353.26 -7.01 -42.09 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.73 Total: 4.67 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.46 Total: 3.94 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.01 Total: -56.55 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.16 Total: -15.99 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.08 -7.01 -42.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200239530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.870 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds