Wall clock time and date at job start Tue Mar 31 2020 04:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.50698 * 119.99870 * 2 1 4 4 C 1.33106 * 119.99779 * 180.02562 * 2 1 3 5 5 F 1.35106 * 119.99714 * 185.20564 * 4 2 1 6 6 C 1.47300 * 120.00417 * 5.20939 * 4 2 1 7 7 O 1.21605 * 120.00012 * 268.44810 * 6 4 2 8 8 N 1.34779 * 119.99886 * 88.44595 * 6 4 2 9 9 C 1.47501 * 118.76096 * 355.02670 * 8 6 4 10 10 C 1.53561 * 111.03425 * 138.38705 * 9 8 6 11 11 C 1.51540 * 109.58291 * 320.02343 * 10 9 8 12 12 O 1.42152 * 108.75541 * 91.39539 * 11 10 9 13 13 C 1.38012 * 119.44360 * 272.77674 * 12 11 10 14 14 H 1.09003 * 109.47016 * 303.42251 * 13 12 11 15 15 C 1.53002 * 109.46952 * 183.43051 * 13 12 11 16 16 N 1.46492 * 109.47243 * 64.98832 * 15 13 12 17 17 C 1.36937 * 120.00082 * 179.72584 * 16 15 13 18 18 H 1.07998 * 119.99676 * 0.27510 * 17 16 15 19 19 C 1.38813 * 120.00171 * 180.27502 * 17 16 15 20 20 N 1.31617 * 119.99833 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00066 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47018 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46961 * 119.99815 * 21 19 17 24 24 H 1.48489 * 109.47183 * 240.00207 * 21 19 17 25 25 C 1.45123 * 118.75339 * 175.04037 * 8 6 4 26 26 H 1.08991 * 109.47013 * 264.86499 * 1 2 3 27 27 H 1.08999 * 109.46641 * 24.86592 * 1 2 3 28 28 H 1.09003 * 109.46765 * 144.86347 * 1 2 3 29 29 H 1.08997 * 109.47192 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47321 * 300.00326 * 3 2 1 31 31 H 1.09004 * 109.47123 * 59.99798 * 3 2 1 32 32 H 1.09003 * 109.16902 * 258.79264 * 9 8 6 33 33 H 1.09004 * 109.16750 * 17.98708 * 9 8 6 34 34 H 1.09005 * 109.45278 * 80.05617 * 10 9 8 35 35 H 1.08996 * 109.45673 * 200.01102 * 10 9 8 36 36 H 1.09004 * 109.59443 * 211.18094 * 11 10 9 37 37 H 1.09004 * 109.58873 * 331.61734 * 11 10 9 38 38 H 1.09004 * 109.47039 * 304.98529 * 15 13 12 39 39 H 1.09003 * 109.46975 * 184.99207 * 15 13 12 40 40 H 0.97001 * 120.00369 * 359.97438 * 16 15 13 41 41 H 0.97001 * 119.99485 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.45751 * 149.23846 * 25 8 6 43 43 H 1.09000 * 109.44960 * 29.28270 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1726 -1.1528 -0.0005 5 9 3.5194 -1.1552 0.1056 6 6 1.4407 -2.4258 -0.1169 7 8 1.0804 -3.0138 0.8847 8 7 1.1702 -2.9388 -1.3335 9 6 1.5206 -2.1505 -2.5300 10 6 2.1256 -3.0451 -3.6217 11 6 3.0508 -4.0644 -2.9882 12 8 2.3056 -5.2395 -2.6972 13 6 1.6385 -5.3389 -1.4931 14 1 2.3449 -5.2039 -0.6741 15 6 0.9881 -6.7194 -1.3829 16 7 2.0302 -7.7478 -1.3350 17 6 1.6844 -9.0687 -1.2301 18 1 0.6433 -9.3525 -1.1872 19 6 2.6721 -10.0428 -1.1789 20 7 3.9409 -9.6968 -1.2317 21 14 2.2004 -11.8445 -1.0351 22 1 0.7209 -11.9672 -0.9950 23 1 2.7267 -12.5890 -2.2071 24 1 2.7783 -12.4096 0.2106 25 6 0.5450 -4.2458 -1.4168 26 1 -0.3633 -0.0920 1.0235 27 1 -0.3632 0.9324 -0.4321 28 1 -0.3633 -0.8404 -0.5915 29 1 3.3322 1.1060 0.0005 30 1 1.9972 1.8767 -0.8899 31 1 1.9972 1.8767 0.8900 32 1 0.6222 -1.6703 -2.9180 33 1 2.2444 -1.3836 -2.2540 34 1 1.3256 -3.5615 -4.1525 35 1 2.6892 -2.4306 -4.3236 36 1 3.8578 -4.3055 -3.6801 37 1 3.4663 -3.6576 -2.0662 38 1 0.3488 -6.8900 -2.2492 39 1 0.3884 -6.7671 -0.4739 40 1 2.9653 -7.4930 -1.3739 41 1 4.6310 -10.3775 -1.1955 42 1 -0.0791 -4.2935 -2.3091 43 1 -0.0717 -4.4100 -0.5332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200239530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:13 Heat of formation + Delta-G solvation = -114.072736 kcal Electronic energy + Delta-G solvation = -25667.946109 eV Core-core repulsion = 21855.878359 eV Total energy + Delta-G solvation = -3812.067750 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.03139 -41.81590 -39.87404 -37.07092 -36.54704 -36.28286 -34.38377 -32.72104 -30.81434 -29.13262 -28.55386 -27.65078 -26.59527 -24.68659 -23.15400 -22.38525 -21.63910 -19.85993 -19.27813 -18.90029 -18.02574 -17.75074 -17.27098 -16.97699 -16.77653 -16.33828 -16.14586 -15.77295 -15.19471 -14.98489 -14.87188 -14.78009 -14.65357 -14.21329 -13.95404 -13.88378 -13.65263 -13.40411 -13.30379 -13.16281 -13.01306 -12.80696 -12.69405 -12.59191 -12.38267 -12.15805 -12.02938 -11.84140 -11.56787 -11.21178 -11.00530 -10.64762 -9.88246 -9.80236 -9.03502 -7.95427 -5.25792 0.37038 1.02435 1.46131 1.48596 1.58768 1.70029 2.55165 2.65151 2.92668 3.38307 3.51268 3.55508 3.74991 3.83370 3.90781 3.99822 4.02476 4.21402 4.26440 4.33980 4.38003 4.47577 4.54496 4.61886 4.66128 4.66735 4.75863 4.79550 4.84754 4.86542 5.01318 5.03715 5.06820 5.11846 5.24431 5.34826 5.41788 5.46656 5.95707 6.24925 6.66129 6.72080 7.30882 8.04449 8.29430 9.28840 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.026216 B = 0.003415 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.789660 B = 8197.026584 C = 8388.439305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.082 4.082 3 C -0.123 4.123 4 C -0.038 4.038 5 F -0.139 7.139 6 C 0.541 3.459 7 O -0.560 6.560 8 N -0.591 5.591 9 C 0.101 3.899 10 C -0.154 4.154 11 C 0.063 3.937 12 O -0.393 6.393 13 C 0.102 3.898 14 H 0.013 0.987 15 C 0.163 3.837 16 N -0.743 5.743 17 C -0.247 4.247 18 H 0.081 0.919 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.981 3.019 22 H -0.262 1.262 23 H -0.291 1.291 24 H -0.293 1.293 25 C 0.091 3.909 26 H 0.078 0.922 27 H 0.111 0.889 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.098 0.902 37 H 0.032 0.968 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.372 0.628 41 H 0.251 0.749 42 H 0.117 0.883 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.666 28.125 -4.818 29.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.084 4.084 3 C -0.179 4.179 4 C -0.060 4.060 5 F -0.118 7.118 6 C 0.328 3.672 7 O -0.439 6.439 8 N -0.322 5.322 9 C -0.020 4.020 10 C -0.192 4.192 11 C -0.013 4.013 12 O -0.312 6.312 13 C 0.042 3.958 14 H 0.031 0.969 15 C 0.037 3.963 16 N -0.385 5.385 17 C -0.378 4.378 18 H 0.098 0.902 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.809 3.191 22 H -0.187 1.187 23 H -0.218 1.218 24 H -0.221 1.221 25 C -0.033 4.033 26 H 0.097 0.903 27 H 0.130 0.870 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.128 0.872 31 H 0.111 0.889 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.140 0.860 36 H 0.116 0.884 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.203 0.797 41 H 0.060 0.940 42 H 0.135 0.865 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.977 27.544 -4.450 29.019 hybrid contribution 1.025 -1.165 0.675 1.692 sum -6.951 26.379 -3.775 27.540 Atomic orbital electron populations 1.20928 0.88518 1.04840 1.03480 1.22899 0.98097 0.93754 0.93674 1.20982 0.99396 0.92399 1.05132 1.19056 0.77676 0.93997 1.15289 1.91475 1.29035 1.96937 1.94331 1.18943 0.79693 0.84807 0.83785 1.90838 1.53684 1.61644 1.37719 1.48029 1.59495 1.18369 1.06331 1.22355 1.02378 0.93401 0.83848 1.22430 1.00688 0.97855 0.98207 1.22413 0.94307 0.85430 0.99159 1.86362 1.66254 1.41780 1.36821 1.21923 0.93022 0.95169 0.85674 0.96892 1.20760 0.91323 0.85590 0.98674 1.42462 1.04714 1.02458 1.88851 1.19736 0.92990 0.84159 1.40919 0.90155 1.25686 0.95191 1.02751 1.03557 1.69870 0.99616 1.33433 1.59374 0.84966 0.77982 0.79464 0.76683 1.18658 1.21787 1.22052 1.22282 0.95349 0.80537 1.05130 0.90320 0.87005 0.92006 0.91945 0.87232 0.88889 0.87519 0.88991 0.89573 0.86005 0.88417 0.94962 0.94306 0.94449 0.79663 0.94023 0.86530 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 9.57 71.24 0.68 -0.76 16 2 C -0.08 -1.26 6.05 -17.60 -0.11 -1.37 16 3 C -0.12 -1.15 10.07 71.24 0.72 -0.44 16 4 C -0.04 -0.90 4.95 23.50 0.12 -0.78 16 5 F -0.14 -3.70 16.08 44.97 0.72 -2.98 16 6 C 0.54 15.81 5.60 86.63 0.48 16.30 16 7 O -0.56 -21.48 16.51 -4.05 -0.07 -21.55 16 8 N -0.59 -14.44 2.17 -822.03 -1.79 -16.23 16 9 C 0.10 1.56 6.06 86.38 0.52 2.08 16 10 C -0.15 -2.56 5.78 30.30 0.18 -2.38 16 11 C 0.06 1.70 6.38 71.50 0.46 2.15 16 12 O -0.39 -14.45 9.38 -117.83 -1.11 -15.56 16 13 C 0.10 3.87 2.68 31.21 0.08 3.95 16 14 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 15 C 0.16 7.22 5.92 86.38 0.51 7.73 16 16 N -0.74 -41.71 5.54 -343.46 -1.90 -43.61 16 17 C -0.25 -14.67 9.99 84.03 0.84 -13.83 16 18 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 19 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 20 N -0.97 -63.09 13.06 21.65 0.28 -62.81 16 21 Si 0.98 48.17 29.55 68.60 2.03 50.20 16 22 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 25 C 0.09 2.57 4.91 87.25 0.43 3.00 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.11 0.58 8.09 -2.39 -0.02 0.56 16 28 H 0.06 0.86 7.03 -2.39 -0.02 0.85 16 29 H 0.06 0.75 7.04 -2.39 -0.02 0.74 16 30 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.28 6.24 -2.38 -0.01 1.27 16 34 H 0.09 1.48 8.01 -2.38 -0.02 1.46 16 35 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.03 0.95 7.40 -2.38 -0.02 0.94 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.37 22.68 7.65 -92.71 -0.71 21.97 16 41 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.12 2.64 8.11 -2.39 -0.02 2.63 16 43 H 0.09 2.68 7.21 -2.39 -0.02 2.66 16 Total: -1.00 -80.50 353.26 3.85 -76.65 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.30 Total: 24.63 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 5.38 Total: 11.25 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -3.41 Total: -122.65 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.17 Total: -37.11 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.72 Total: -2.98 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.20 kcal Total: -80.50 3.85 -76.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200239530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.422 kcal (2) G-P(sol) polarization free energy of solvation -80.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds