Wall clock time and date at job start Tue Mar 31 2020 04:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.47043 * 2 1 4 4 C 1.42897 * 114.00285 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47290 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.46710 * 65.00600 * 5 4 3 7 7 N 1.41598 * 113.99529 * 179.97438 * 6 5 4 8 8 C 1.34778 * 120.00002 * 179.97438 * 7 6 5 9 9 O 1.21356 * 119.99800 * 359.97438 * 8 7 6 10 10 C 1.49450 * 120.00518 * 180.02562 * 8 7 6 11 11 O 1.21354 * 119.99602 * 4.97019 * 10 8 7 12 12 N 1.34771 * 119.99952 * 184.97328 * 10 8 7 13 13 C 1.46507 * 119.99624 * 174.27882 * 12 10 8 14 14 C 1.52998 * 109.46883 * 183.79109 * 13 12 10 15 15 C 1.50698 * 115.55381 * 306.41422 * 14 13 12 16 16 H 1.08000 * 119.99829 * 145.14928 * 15 14 13 17 17 C 1.37868 * 120.00083 * 325.15749 * 15 14 13 18 18 N 1.31516 * 120.00202 * 349.98902 * 17 15 14 19 19 Si 1.86804 * 120.00009 * 169.99659 * 17 15 14 20 20 H 1.48497 * 109.47552 * 59.99552 * 19 17 15 21 21 H 1.48503 * 109.47112 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47107 * 299.99262 * 19 17 15 23 23 C 1.53002 * 117.49364 * 160.74567 * 14 13 12 24 24 C 1.53005 * 117.49759 * 92.08767 * 14 13 12 25 25 H 1.08997 * 109.46905 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47072 * 300.00066 * 1 2 3 27 27 H 1.08998 * 109.47304 * 60.00033 * 1 2 3 28 28 H 1.09000 * 109.47072 * 239.99934 * 2 1 3 29 29 H 1.09000 * 109.47140 * 119.99446 * 2 1 3 30 30 H 1.09003 * 109.46922 * 59.99401 * 4 3 2 31 31 H 1.08998 * 109.46818 * 300.00490 * 4 3 2 32 32 H 1.08998 * 109.47252 * 304.99895 * 5 4 3 33 33 H 1.09005 * 109.46677 * 184.99887 * 5 4 3 34 34 H 0.97001 * 120.00806 * 359.97438 * 7 6 5 35 35 H 0.96996 * 120.00463 * 354.01002 * 12 10 8 36 36 H 1.08999 * 109.47288 * 303.79655 * 13 12 10 37 37 H 1.09000 * 109.46808 * 63.79952 * 13 12 10 38 38 H 0.97000 * 120.00173 * 185.03834 * 18 17 15 39 39 H 1.08998 * 117.50481 * 0.02562 * 23 14 13 40 40 H 1.09001 * 117.49673 * 145.02407 * 23 14 13 41 41 H 1.08997 * 117.50128 * 214.97712 * 24 14 13 42 42 H 1.09003 * 117.49406 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 8 3.3975 3.5461 1.2205 7 7 3.7163 4.9221 1.3214 8 6 3.3681 5.6154 2.4234 9 8 2.7809 5.0605 3.3291 10 6 3.7039 7.0678 2.5298 11 8 4.2088 7.6442 1.5888 12 7 3.4461 7.7372 3.6707 13 6 3.8881 9.1260 3.8210 14 6 3.5561 9.6170 5.2315 15 6 2.1191 9.4543 5.6550 16 1 1.8819 9.2240 6.6832 17 6 1.1071 9.5993 4.7300 18 7 1.3743 10.0699 3.5313 19 14 -0.6437 9.1277 5.1793 20 1 -1.0949 9.9430 6.3354 21 1 -1.5368 9.3774 4.0194 22 1 -0.6914 7.6880 5.5402 23 6 4.3103 10.8439 5.7480 24 6 4.6322 9.4558 6.3071 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8340 0.9764 -0.8891 31 1 3.8332 0.9767 0.8908 32 1 3.3499 3.4410 -0.8424 33 1 4.9082 3.0255 -0.0892 34 1 4.1852 5.3658 0.5974 35 1 2.9646 7.3009 4.3909 36 1 4.9645 9.1842 3.6598 37 1 3.3767 9.7511 3.0890 38 1 0.6532 10.2408 2.9055 39 1 5.0426 11.3016 5.0829 40 1 3.7671 11.5332 6.3945 41 1 4.3008 9.2324 7.3212 42 1 5.5765 8.9995 6.0099 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261227307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:08 Heat of formation + Delta-G solvation = -82.905974 kcal Electronic energy + Delta-G solvation = -24298.155948 eV Core-core repulsion = 20475.066900 eV Total energy + Delta-G solvation = -3823.089048 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -39.96117 -38.69337 -38.00711 -36.94142 -36.70387 -33.46576 -32.64146 -32.18776 -31.43096 -29.12000 -26.74440 -25.52397 -23.31453 -23.08886 -23.00279 -21.25116 -19.84357 -19.39236 -18.59939 -17.64953 -17.25934 -16.40917 -16.19442 -15.87601 -15.66016 -15.07754 -14.94573 -14.65243 -14.50731 -14.02367 -13.70531 -13.55302 -13.11403 -12.94657 -12.75624 -12.66613 -12.05059 -11.84447 -11.66025 -11.55306 -11.51255 -11.17088 -11.10639 -10.97676 -10.82474 -10.51786 -10.28867 -9.94703 -9.66225 -9.20341 -9.05496 -8.91914 -8.87258 -8.36857 -8.03620 -6.09344 -4.19330 1.65663 1.94909 3.28126 3.29347 3.35036 3.38639 3.74320 3.81954 4.32245 4.38448 4.57027 4.74018 4.78110 4.85367 4.89371 5.01412 5.04566 5.07026 5.16274 5.33222 5.44100 5.47122 5.63943 5.87687 5.94931 6.23893 6.47916 6.52385 6.64455 6.68851 6.81628 6.85883 6.99061 7.05632 7.22462 7.33071 7.48895 7.87467 8.05812 8.26938 8.33512 8.71179 8.79553 9.42719 10.87842 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.016789 B = 0.003297 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.309211 B = 8491.491994 C = 9553.219365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.381 6.381 4 C 0.072 3.928 5 C 0.031 3.969 6 O -0.134 6.134 7 N -0.578 5.578 8 C 0.518 3.482 9 O -0.501 6.501 10 C 0.509 3.491 11 O -0.543 6.543 12 N -0.644 5.644 13 C 0.158 3.842 14 C 0.035 3.965 15 C -0.501 4.501 16 H 0.064 0.936 17 C 0.075 3.925 18 N -0.871 5.871 19 Si 0.892 3.108 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.271 1.271 23 C -0.193 4.193 24 C -0.211 4.211 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.418 0.582 35 H 0.415 0.585 36 H 0.035 0.965 37 H 0.118 0.882 38 H 0.265 0.735 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.807 -15.944 -8.933 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.301 6.301 4 C -0.006 4.006 5 C -0.046 4.046 6 O -0.137 6.137 7 N -0.283 5.283 8 C 0.300 3.700 9 O -0.372 6.372 10 C 0.287 3.713 11 O -0.423 6.423 12 N -0.293 5.293 13 C 0.036 3.964 14 C 0.034 3.966 15 C -0.538 4.538 16 H 0.082 0.918 17 C -0.129 4.129 18 N -0.507 5.507 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.231 4.231 24 C -0.248 4.248 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.260 0.740 35 H 0.252 0.748 36 H 0.053 0.947 37 H 0.136 0.864 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.420 -15.884 -8.944 18.757 hybrid contribution -0.658 -0.548 -0.072 0.860 sum 3.761 -16.431 -9.016 19.116 Atomic orbital electron populations 1.21748 0.93552 1.02198 1.03525 1.22477 0.95931 0.83516 0.99959 1.88012 1.20079 1.26592 1.95407 1.22407 0.82749 0.93924 1.01570 1.23076 0.99770 0.93273 0.88515 1.90662 1.80003 1.05660 1.37415 1.47200 1.60733 0.98869 1.21453 1.20756 0.80013 0.87878 0.81352 1.90776 1.38652 1.69927 1.37875 1.19266 0.81836 0.85427 0.84738 1.90704 1.45473 1.68951 1.37175 1.45682 1.53329 1.14582 1.15689 1.21276 0.95563 0.79870 0.99714 1.19153 0.92003 0.96169 0.89229 1.20474 0.88265 1.49617 0.95472 0.91800 1.24976 0.99219 0.94062 0.94681 1.69795 1.32508 1.41990 1.06366 0.86639 0.83834 0.79644 0.77992 1.20169 1.21149 1.19637 1.22932 1.04329 0.91255 1.04634 1.22987 1.00535 1.01461 0.99855 0.91098 0.91492 0.91829 0.93473 0.93218 0.90867 0.91887 0.90864 0.90277 0.74026 0.74763 0.94662 0.86398 0.92427 0.91401 0.90045 0.90413 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.86 16 2 C 0.06 0.49 6.66 37.16 0.25 0.74 16 3 O -0.38 -4.47 10.31 -40.08 -0.41 -4.88 16 4 C 0.07 0.63 6.32 37.16 0.23 0.87 16 5 C 0.03 0.31 6.61 37.16 0.25 0.55 16 6 O -0.13 -2.05 11.07 -34.82 -0.39 -2.44 16 7 N -0.58 -9.14 6.38 30.91 0.20 -8.95 16 8 C 0.52 10.09 8.03 -11.58 -0.09 10.00 16 9 O -0.50 -11.17 16.90 -12.69 -0.21 -11.38 16 10 C 0.51 10.57 7.88 -11.59 -0.09 10.48 16 11 O -0.54 -11.72 16.50 5.49 0.09 -11.63 16 12 N -0.64 -14.18 5.27 -60.73 -0.32 -14.50 16 13 C 0.16 3.62 4.73 -4.04 -0.02 3.60 16 14 C 0.04 0.82 2.00 -155.66 -0.31 0.51 16 15 C -0.50 -12.85 8.27 -34.44 -0.28 -13.13 16 16 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 17 C 0.08 1.96 5.13 -17.82 -0.09 1.86 16 18 N -0.87 -23.25 10.72 55.43 0.59 -22.65 16 19 Si 0.89 20.74 29.55 -169.99 -5.02 15.71 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.19 -4.13 9.96 -26.69 -0.27 -4.40 16 24 C -0.21 -4.34 9.92 -26.69 -0.26 -4.60 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.42 5.45 8.02 -40.82 -0.33 5.12 16 35 H 0.42 9.37 7.40 -40.82 -0.30 9.07 16 36 H 0.04 0.76 8.08 -51.93 -0.42 0.34 16 37 H 0.12 3.05 6.03 -51.93 -0.31 2.73 16 38 H 0.27 6.94 8.32 -40.82 -0.34 6.60 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 41 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 365.35 15.07 5.51 5.51 Total: -1.00 -31.04 365.35 -6.69 -37.73 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -6.40 Total: 11.86 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -0.31 Total: 5.62 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.47 Total: -46.10 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.92 Total: -30.33 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.04 -6.69 -37.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261227307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.180 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds