Wall clock time and date at job start Tue Mar 31 2020 03:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99661 * 2 1 4 4 H 1.48493 * 109.46955 * 274.99890 * 3 2 1 5 5 H 1.48498 * 109.47032 * 35.00048 * 3 2 1 6 6 H 1.48500 * 109.46995 * 155.00026 * 3 2 1 7 7 C 1.37877 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99884 * 184.93153 * 7 2 1 9 9 C 1.50702 * 119.99910 * 4.92352 * 7 2 1 10 10 O 1.42898 * 110.88736 * 298.63494 * 9 7 2 11 11 C 1.55155 * 111.00233 * 174.75297 * 9 7 2 12 12 C 1.54322 * 102.94241 * 206.42766 * 11 9 7 13 13 N 1.47021 * 107.27129 * 22.19227 * 12 11 9 14 14 C 1.34776 * 125.64726 * 181.02458 * 13 12 11 15 15 O 1.21593 * 119.99782 * 180.02562 * 14 13 12 16 16 N 1.34777 * 120.00412 * 0.02562 * 14 13 12 17 17 C 1.46492 * 120.00217 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47275 * 180.02562 * 17 16 14 19 19 H 1.09004 * 109.52209 * 304.99916 * 18 17 16 20 20 C 1.53135 * 109.52564 * 184.87246 * 18 17 16 21 21 O 1.43094 * 109.14598 * 184.85390 * 20 18 17 22 22 C 1.43080 * 113.64819 * 57.84469 * 21 20 18 23 23 C 1.53144 * 109.14887 * 302.08780 * 22 21 20 24 24 O 1.43070 * 109.52467 * 65.12905 * 18 17 16 25 25 C 1.47421 * 108.70430 * 1.28750 * 13 12 11 26 26 H 0.97000 * 119.99938 * 359.97438 * 1 2 3 27 27 H 0.96702 * 113.99815 * 56.11826 * 10 9 7 28 28 H 1.09005 * 110.71962 * 88.06196 * 11 9 7 29 29 H 1.08998 * 110.87478 * 324.86373 * 11 9 7 30 30 H 1.09006 * 109.87914 * 262.77934 * 12 11 9 31 31 H 1.08997 * 109.88307 * 141.61574 * 12 11 9 32 32 H 0.97005 * 119.99453 * 0.02562 * 16 14 13 33 33 H 1.09000 * 109.47569 * 60.00306 * 17 16 14 34 34 H 1.09002 * 109.47621 * 300.00221 * 17 16 14 35 35 H 1.08999 * 109.52346 * 304.68422 * 20 18 17 36 36 H 1.08996 * 109.52809 * 64.88195 * 20 18 17 37 37 H 1.09000 * 109.52390 * 182.18678 * 22 21 20 38 38 H 1.09001 * 109.57878 * 62.01978 * 22 21 20 39 39 H 1.08999 * 109.52569 * 295.40285 * 23 22 21 40 40 H 1.09004 * 109.52033 * 175.21470 * 23 22 21 41 41 H 1.09010 * 110.36697 * 94.47640 * 25 13 12 42 42 H 1.08991 * 110.37097 * 216.80244 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3909 2.1075 -1.3947 5 1 1.5033 2.6199 0.8031 6 1 3.5955 1.4121 0.5917 7 6 2.0046 -1.1940 0.0005 8 1 3.0816 -1.1957 0.0809 9 6 1.2553 -2.4968 -0.1109 10 8 0.3618 -2.6665 0.9913 11 6 2.2355 -3.6944 -0.2218 12 6 1.4065 -4.7502 -0.9830 13 7 0.3495 -4.0333 -1.7111 14 6 -0.5984 -4.6028 -2.4817 15 8 -1.4262 -3.9086 -3.0396 16 7 -0.6287 -5.9416 -2.6338 17 6 -1.6586 -6.5604 -3.4719 18 6 -1.4695 -8.0787 -3.4747 19 1 -0.4533 -8.3186 -3.7876 20 6 -2.4678 -8.7170 -4.4448 21 8 -2.3618 -10.1414 -4.3574 22 6 -2.5906 -10.6542 -3.0414 23 6 -1.5911 -10.0157 -2.0726 24 8 -1.6983 -8.5916 -2.1588 25 6 0.5018 -2.5880 -1.4639 26 1 -0.4850 0.8400 0.0004 27 1 -0.2698 -1.9425 1.1007 28 1 2.5110 -4.0601 0.7674 29 1 3.1235 -3.4181 -0.7903 30 1 0.9606 -5.4509 -0.2769 31 1 2.0441 -5.2853 -1.6867 32 1 0.0315 -6.4954 -2.1884 33 1 -1.5744 -6.1816 -4.4904 34 1 -2.6443 -6.3182 -3.0746 35 1 -3.4798 -8.4111 -4.1797 36 1 -2.2437 -8.3958 -5.4619 37 1 -2.4558 -11.7359 -3.0435 38 1 -3.6065 -10.4143 -2.7274 39 1 -0.5794 -10.3218 -2.3387 40 1 -1.8141 -10.3369 -1.0551 41 1 1.0880 -2.1268 -2.2589 42 1 -0.4752 -2.1113 -1.3864 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261452182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:34 Heat of formation + Delta-G solvation = -162.117966 kcal Electronic energy + Delta-G solvation = -25249.390680 eV Core-core repulsion = 21422.866742 eV Total energy + Delta-G solvation = -3826.523937 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.35405 -39.47983 -37.39514 -36.40678 -34.62985 -34.19246 -32.16355 -31.89244 -30.03906 -28.79614 -27.75022 -26.16730 -24.78646 -23.37040 -22.33173 -21.45942 -19.62635 -19.42045 -17.69977 -17.23287 -17.07208 -16.77929 -16.48282 -15.83244 -15.45856 -15.22481 -15.06604 -14.83038 -14.34808 -13.87203 -13.72461 -13.61840 -13.01380 -12.89256 -12.73409 -12.46895 -12.20253 -11.97798 -11.73299 -11.59596 -11.39791 -11.04768 -11.01538 -10.76748 -10.68444 -10.56682 -10.47560 -10.15701 -9.66747 -9.46776 -9.34334 -8.82162 -8.65937 -8.32402 -7.64182 -6.26631 -4.35921 3.06118 3.22153 3.28592 3.29923 3.32414 3.38860 3.78752 4.19758 4.28109 4.49884 4.56095 4.62583 4.72368 4.76727 4.91132 5.01162 5.13231 5.22686 5.35518 5.41326 5.44998 5.59234 5.68547 5.74919 5.83937 6.06757 6.13752 6.54658 6.58288 6.68475 6.73811 6.78618 6.90532 6.99647 7.26245 7.37458 7.67053 7.76673 8.04170 8.56584 8.68848 9.16095 9.32984 9.47607 10.80572 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.036894 B = 0.002999 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.741448 B = 9335.104513 C = 9662.851015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.116 4.116 12 C 0.106 3.894 13 N -0.627 5.627 14 C 0.717 3.283 15 O -0.599 6.599 16 N -0.747 5.747 17 C 0.152 3.848 18 C 0.043 3.957 19 H 0.075 0.925 20 C 0.034 3.966 21 O -0.379 6.379 22 C 0.022 3.978 23 C 0.024 3.976 24 O -0.369 6.369 25 C 0.113 3.887 26 H 0.271 0.729 27 H 0.385 0.615 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.396 0.604 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.106 0.894 41 H 0.057 0.943 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 -19.010 -5.775 19.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.363 5.363 14 C 0.419 3.581 15 O -0.478 6.478 16 N -0.404 5.404 17 C 0.027 3.973 18 C -0.015 4.015 19 H 0.093 0.907 20 C -0.044 4.044 21 O -0.297 6.297 22 C -0.055 4.055 23 C -0.053 4.053 24 O -0.288 6.288 25 C -0.009 4.009 26 H 0.081 0.919 27 H 0.236 0.764 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.230 0.770 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.124 0.876 41 H 0.075 0.925 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.331 -18.942 -6.162 20.055 hybrid contribution 0.414 1.037 0.135 1.124 sum -1.917 -17.905 -6.027 18.989 Atomic orbital electron populations 1.69645 1.06014 1.27944 1.49447 1.25095 0.95020 0.99775 0.93391 0.86390 0.79834 0.82532 0.78155 1.20449 1.21013 1.19686 1.21485 0.94007 0.90150 1.52084 0.91478 1.19649 0.85779 0.91443 0.82364 1.86072 1.51156 1.50788 1.51323 1.22590 0.97829 0.95512 0.99467 1.21922 0.89496 0.95830 0.94520 1.47874 1.29592 1.09956 1.48893 1.15483 0.81450 0.81315 0.79855 1.90882 1.41548 1.61985 1.53400 1.44932 1.34978 1.05774 1.54731 1.20992 0.92775 0.87706 0.95858 1.23050 0.99528 0.94422 0.84511 0.90686 1.23170 0.99200 0.81154 1.00838 1.88099 1.92374 1.20593 1.28655 1.23282 0.99051 0.99613 0.83539 1.23259 0.99225 0.81698 1.01120 1.88208 1.92281 1.20283 1.28012 1.23152 1.02456 0.76166 0.99126 0.91926 0.76414 0.90830 0.90470 0.92585 0.93263 0.77016 0.90057 0.90827 0.91482 0.87214 0.87768 0.91949 0.92074 0.87592 0.92515 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.98 10.71 55.43 0.59 -23.38 16 2 C 0.07 1.84 5.26 -17.82 -0.09 1.75 16 3 Si 0.90 20.37 29.54 -169.99 -5.02 15.34 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.54 -14.02 8.26 -34.44 -0.28 -14.31 16 8 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 9 C 0.25 6.07 0.89 -89.50 -0.08 5.99 16 10 O -0.58 -15.17 13.20 -35.23 -0.47 -15.63 16 11 C -0.12 -2.31 6.12 -24.90 -0.15 -2.46 16 12 C 0.11 1.89 6.15 -3.07 -0.02 1.87 16 13 N -0.63 -13.31 3.32 -176.10 -0.59 -13.90 16 14 C 0.72 14.99 8.49 -86.92 -0.74 14.25 16 15 O -0.60 -14.75 16.60 5.28 0.09 -14.66 16 16 N -0.75 -11.74 5.47 -65.23 -0.36 -12.09 16 17 C 0.15 1.96 5.35 -4.04 -0.02 1.93 16 18 C 0.04 0.44 2.87 -26.66 -0.08 0.36 16 19 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 20 C 0.03 0.30 6.34 37.23 0.24 0.53 16 21 O -0.38 -3.66 10.85 -48.80 -0.53 -4.19 16 22 C 0.02 0.16 7.05 37.23 0.26 0.43 16 23 C 0.02 0.19 7.05 37.23 0.26 0.45 16 24 O -0.37 -4.16 10.44 -48.80 -0.51 -4.67 16 25 C 0.11 2.77 5.52 -2.41 -0.01 2.76 16 26 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.38 10.34 7.18 45.56 0.33 10.67 16 28 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 29 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.40 5.48 7.46 -40.82 -0.30 5.17 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 1.42 8.04 -51.92 -0.42 1.00 16 42 H 0.08 2.29 7.50 -51.93 -0.39 1.90 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -31.91 342.80 -8.16 -40.06 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -5.82 Total: 14.40 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: -0.72 Total: 13.56 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.35 Total: -49.38 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -1.42 Total: -39.15 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.91 -8.16 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261452182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.055 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds