Wall clock time and date at job start Tue Mar 31 2020 03:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99683 * 2 1 4 4 H 1.48507 * 109.47112 * 240.00044 * 3 2 1 5 5 H 1.48500 * 109.47315 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47082 * 120.00307 * 3 2 1 7 7 C 1.37879 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00158 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99850 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.46862 * 179.97438 * 9 7 2 11 11 C 1.42897 * 113.99417 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46912 * 180.02562 * 11 10 9 13 13 O 1.45202 * 109.47197 * 64.99789 * 12 11 10 14 14 C 1.34222 * 117.00025 * 179.97438 * 13 12 11 15 15 O 1.20826 * 120.00250 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99915 * 180.02562 * 14 13 12 17 17 H 1.08996 * 109.50216 * 59.94055 * 16 14 13 18 18 C 1.53048 * 109.49614 * 180.02562 * 16 14 13 19 19 C 1.53040 * 109.53641 * 181.31595 * 18 16 14 20 20 C 1.53198 * 109.31268 * 298.63405 * 19 18 16 21 21 N 1.46925 * 108.77332 * 54.63430 * 20 19 18 22 22 C 1.34777 * 120.62725 * 126.37173 * 21 20 19 23 23 N 1.34772 * 120.00143 * 5.22146 * 22 21 20 24 24 O 1.21587 * 120.00151 * 185.22272 * 22 21 20 25 25 C 1.46919 * 118.74063 * 306.64341 * 21 20 19 26 26 H 0.96990 * 120.00324 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46859 * 60.00019 * 9 7 2 28 28 H 1.08997 * 109.47211 * 300.00139 * 9 7 2 29 29 H 1.09005 * 109.47471 * 60.00781 * 11 10 9 30 30 H 1.09004 * 109.47704 * 300.00214 * 11 10 9 31 31 H 1.09003 * 109.47009 * 305.00230 * 12 11 10 32 32 H 1.08995 * 109.47443 * 185.00206 * 12 11 10 33 33 H 1.08997 * 109.46246 * 61.29784 * 18 16 14 34 34 H 1.09001 * 109.46221 * 301.33299 * 18 16 14 35 35 H 1.08998 * 109.49946 * 178.68669 * 19 18 16 36 36 H 1.09004 * 109.49964 * 58.58145 * 19 18 16 37 37 H 1.09004 * 109.58640 * 294.84958 * 20 19 18 38 38 H 1.08998 * 109.58475 * 174.42185 * 20 19 18 39 39 H 0.97000 * 120.00175 * 175.02582 * 23 22 21 40 40 H 0.97006 * 120.00282 * 354.75375 * 23 22 21 41 41 H 1.09004 * 109.58744 * 173.15042 * 25 21 20 42 42 H 1.09005 * 109.58981 * 293.56914 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5853 -0.0017 11 6 1.5652 -4.8754 -0.0013 12 6 2.6482 -5.9562 -0.0020 13 8 3.4004 -5.8885 1.2382 14 6 4.3945 -6.7762 1.3971 15 8 4.6288 -7.5828 0.5285 16 6 5.2185 -6.7668 2.6588 17 1 4.5704 -6.9400 3.5179 18 6 6.2766 -7.8702 2.5861 19 6 7.0926 -7.8829 3.8807 20 6 7.8073 -6.5375 4.0424 21 7 6.8105 -5.4606 3.9678 22 6 6.7219 -4.5380 4.9463 23 7 7.6187 -4.5345 5.9523 24 8 5.8329 -3.7089 4.9215 25 6 5.9082 -5.4122 2.8094 26 1 -0.4850 0.8399 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8896 29 1 0.9441 -4.9824 -0.8907 30 1 0.9460 -4.9826 0.8894 31 1 3.3212 -5.7956 -0.8443 32 1 2.1822 -6.9374 -0.0912 33 1 6.9391 -7.6829 1.7411 34 1 5.7867 -8.8352 2.4562 35 1 7.8306 -8.6839 3.8378 36 1 6.4272 -8.0455 4.7287 37 1 8.5389 -6.4141 3.2438 38 1 8.3094 -6.5043 5.0092 39 1 7.5993 -3.8282 6.6170 40 1 8.2813 -5.2403 6.0141 41 1 5.1578 -4.6366 2.9629 42 1 6.4818 -5.1951 1.9082 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324941405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:59 Heat of formation + Delta-G solvation = -194.313645 kcal Electronic energy + Delta-G solvation = -24744.345316 eV Core-core repulsion = 20916.425269 eV Total energy + Delta-G solvation = -3827.920047 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.97864 -41.10123 -38.94724 -38.34495 -37.40359 -35.15916 -34.96319 -33.40016 -32.59944 -31.46670 -29.05296 -26.51234 -25.86012 -24.58080 -23.75250 -22.81562 -21.61380 -20.58306 -19.48445 -18.82191 -18.69941 -18.08075 -17.81044 -17.52202 -17.11900 -16.50123 -16.38972 -16.12613 -15.84119 -15.50116 -15.36631 -15.20317 -14.51332 -14.37633 -14.24359 -14.06151 -13.73106 -13.65541 -13.20424 -12.95152 -12.72407 -12.62329 -12.45856 -12.07830 -12.02810 -12.02228 -11.78266 -11.71303 -11.53349 -11.31747 -11.29553 -10.90882 -10.73271 -10.29256 -9.69866 -8.34169 -6.46250 0.99983 1.37528 1.43134 1.51104 1.53156 1.81592 2.10173 2.33112 2.99658 3.04609 3.21177 3.46536 3.63323 3.67984 3.90290 3.98288 4.03542 4.08150 4.10953 4.39728 4.47688 4.49570 4.53364 4.64285 4.69937 4.73907 4.82439 4.86197 5.00941 5.10711 5.15160 5.33223 5.35046 5.44853 5.52205 5.79636 5.93068 5.99867 6.47620 6.62415 6.77413 6.90912 7.25135 7.60296 8.78071 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.003777 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.046030 B = 7410.869868 C = 9220.681649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.553 4.553 8 H 0.058 0.942 9 C 0.209 3.791 10 O -0.410 6.410 11 C 0.052 3.948 12 C 0.077 3.923 13 O -0.361 6.361 14 C 0.468 3.532 15 O -0.526 6.526 16 C -0.086 4.086 17 H 0.117 0.883 18 C -0.100 4.100 19 C -0.125 4.125 20 C 0.100 3.900 21 N -0.623 5.623 22 C 0.698 3.302 23 N -0.843 5.843 24 O -0.646 6.646 25 C 0.140 3.860 26 H 0.272 0.728 27 H -0.005 1.005 28 H -0.013 1.013 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.420 0.580 40 H 0.414 0.586 41 H 0.071 0.929 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.611 -19.726 10.845 29.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.189 4.189 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.590 4.590 8 H 0.076 0.924 9 C 0.134 3.866 10 O -0.330 6.330 11 C -0.025 4.025 12 C 0.004 3.996 13 O -0.277 6.277 14 C 0.311 3.689 15 O -0.415 6.415 16 C -0.106 4.106 17 H 0.135 0.865 18 C -0.137 4.137 19 C -0.163 4.163 20 C -0.021 4.021 21 N -0.361 5.361 22 C 0.398 3.602 23 N -0.415 5.415 24 O -0.527 6.527 25 C 0.015 3.985 26 H 0.081 0.919 27 H 0.013 0.987 28 H 0.004 0.996 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.129 0.871 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.134 0.866 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.130 0.870 39 H 0.253 0.747 40 H 0.248 0.752 41 H 0.090 0.910 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.094 -19.353 10.410 28.466 hybrid contribution -0.398 0.843 -0.055 0.933 sum 17.696 -18.511 10.355 27.623 Atomic orbital electron populations 1.70043 1.07624 1.28787 1.50331 1.25920 0.95991 1.03245 0.93793 0.85281 0.78222 0.76909 0.79303 1.18741 1.19488 1.19554 1.21362 0.94031 0.91073 1.52568 0.92392 1.19853 0.88525 0.84362 0.93816 1.87864 1.35555 1.14255 1.95315 1.22672 0.94657 0.83421 1.01752 1.23218 0.93148 0.99154 0.84056 1.86639 1.44232 1.54934 1.41871 1.23989 0.78556 0.77157 0.89153 1.90621 1.68344 1.38636 1.43921 1.21442 0.97057 0.98969 0.93178 0.86507 1.21473 0.95912 0.96520 0.99835 1.21950 1.00221 0.97590 0.96547 1.22110 0.90081 0.85243 1.04664 1.47191 1.37879 1.29866 1.21172 1.16173 0.82109 0.81245 0.80681 1.42884 1.35935 1.33539 1.29163 1.91020 1.38565 1.43615 1.79501 1.21039 0.93422 0.95610 0.88384 0.91918 0.98743 0.99564 0.89797 0.92874 0.90775 0.87055 0.90774 0.90179 0.86615 0.90862 0.89508 0.86992 0.74696 0.75216 0.91038 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 2 C 0.01 0.56 5.46 84.65 0.46 1.02 16 3 Si 0.98 46.48 29.54 68.60 2.03 48.51 16 4 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.55 -34.69 9.43 25.60 0.24 -34.45 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.61 16 9 C 0.21 12.29 5.69 71.24 0.41 12.69 16 10 O -0.41 -21.25 10.30 -145.57 -1.50 -22.75 16 11 C 0.05 1.98 6.33 71.98 0.46 2.43 16 12 C 0.08 2.50 5.84 71.98 0.42 2.92 16 13 O -0.36 -12.56 10.12 -48.69 -0.49 -13.05 16 14 C 0.47 13.62 7.26 71.24 0.52 14.14 16 15 O -0.53 -16.34 15.73 21.96 0.35 -15.99 16 16 C -0.09 -1.90 2.77 -11.60 -0.03 -1.93 16 17 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 18 C -0.10 -1.46 4.46 30.62 0.14 -1.32 16 19 C -0.13 -0.94 6.08 30.67 0.19 -0.75 16 20 C 0.10 0.85 6.39 86.36 0.55 1.40 16 21 N -0.62 -12.34 2.98 -837.74 -2.49 -14.83 16 22 C 0.70 17.36 8.57 179.06 1.53 18.89 16 23 N -0.84 -11.02 8.78 -184.75 -1.62 -12.64 16 24 O -0.65 -24.84 16.60 -3.99 -0.07 -24.91 16 25 C 0.14 3.62 5.62 86.22 0.48 4.10 16 26 H 0.27 15.57 8.31 -92.72 -0.77 14.80 16 27 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 28 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 29 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.07 2.43 8.13 -2.39 -0.02 2.41 16 32 H 0.11 2.83 8.13 -2.39 -0.02 2.81 16 33 H 0.07 1.14 8.13 -2.39 -0.02 1.13 16 34 H 0.08 1.16 8.07 -2.39 -0.02 1.15 16 35 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 38 H 0.11 0.21 5.64 -2.39 -0.01 0.20 16 39 H 0.42 4.97 8.93 -92.71 -0.83 4.14 16 40 H 0.41 1.90 6.32 -92.70 -0.59 1.31 16 41 H 0.07 2.52 6.99 -2.39 -0.02 2.50 16 42 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -86.34 352.31 1.48 -84.87 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -0.37 Total: 8.85 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 5.37 Total: 19.15 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -3.83 Total: -84.67 kcal Atomic # 8 Polarization: -74.99 SS G_CDS: -1.71 Total: -76.70 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -86.34 1.48 -84.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324941405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.448 kcal (2) G-P(sol) polarization free energy of solvation -86.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds