Wall clock time and date at job start Tue Mar 31 2020 04:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47109 * 2 1 4 4 C 1.42905 * 113.99885 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46994 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47195 * 64.99781 * 5 4 3 7 7 C 1.34777 * 119.99846 * 179.97438 * 6 5 4 8 8 O 1.21350 * 119.99865 * 359.97438 * 7 6 5 9 9 C 1.49449 * 119.99831 * 180.02562 * 7 6 5 10 10 O 1.21349 * 119.99754 * 359.97438 * 9 7 6 11 11 N 1.34772 * 119.99933 * 180.02562 * 9 7 6 12 12 C 1.47021 * 125.64937 * 359.94885 * 11 9 7 13 13 C 1.54370 * 107.28813 * 181.13182 * 12 11 9 14 14 C 1.55147 * 102.92092 * 22.14333 * 13 12 11 15 15 O 1.42905 * 111.00578 * 82.63751 * 14 13 12 16 16 C 1.50702 * 111.00308 * 206.45025 * 14 13 12 17 17 H 1.08002 * 120.00299 * 356.82421 * 16 14 13 18 18 C 1.37884 * 119.99942 * 176.53980 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.47423 * 125.64837 * 179.97438 * 11 9 7 25 25 H 1.09002 * 109.47011 * 299.99921 * 1 2 3 26 26 H 1.08998 * 109.47011 * 59.99993 * 1 2 3 27 27 H 1.08999 * 109.46966 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47097 * 239.99531 * 2 1 3 29 29 H 1.09002 * 109.47463 * 119.99793 * 2 1 3 30 30 H 1.08997 * 109.47225 * 59.99809 * 4 3 2 31 31 H 1.09003 * 109.46913 * 299.99417 * 4 3 2 32 32 H 1.09002 * 109.47198 * 304.99662 * 5 4 3 33 33 H 1.08997 * 109.47249 * 184.99637 * 5 4 3 34 34 H 0.96999 * 119.99794 * 359.97438 * 6 5 4 35 35 H 1.09001 * 109.88518 * 300.52094 * 12 11 9 36 36 H 1.09002 * 109.88165 * 61.68403 * 12 11 9 37 37 H 1.09001 * 110.70699 * 263.79361 * 13 12 11 38 38 H 1.09008 * 110.75075 * 140.51110 * 13 12 11 39 39 H 0.96701 * 113.99475 * 183.17547 * 15 14 13 40 40 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 41 41 H 1.08996 * 110.36708 * 36.99367 * 24 11 9 42 42 H 1.08999 * 110.36888 * 274.67114 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 7 3.3878 3.5611 1.2506 7 6 3.6294 4.8681 1.4735 8 8 4.2099 5.5290 0.6375 9 6 3.1835 5.5033 2.7507 10 8 2.6034 4.8422 3.5869 11 7 3.4247 6.8104 2.9734 12 6 4.1140 7.7239 2.0505 13 6 4.1836 9.1043 2.7380 14 6 4.0313 8.7514 4.2411 15 8 5.2829 8.3505 4.8024 16 6 3.4428 9.9060 5.0101 17 1 3.2376 10.8403 4.5087 18 6 3.1607 9.7678 6.3527 19 7 3.4105 8.6301 6.9633 20 14 2.4240 11.1965 7.3042 21 1 0.9423 11.1227 7.2396 22 1 2.8618 11.1256 8.7214 23 1 2.8823 12.4771 6.7081 24 6 3.0414 7.5609 4.1831 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8333 0.9766 -0.8908 31 1 3.8340 0.9765 0.8892 32 1 3.3493 3.4411 -0.8430 33 1 4.9082 3.0254 -0.0911 34 1 2.9241 3.0327 1.9190 35 1 5.1214 7.3587 1.8508 36 1 3.5541 7.8014 1.1185 37 1 3.3638 9.7417 2.4065 38 1 5.1452 9.5817 2.5494 39 1 5.2284 8.0737 5.7274 40 1 3.2124 8.5330 7.9080 41 1 3.1494 6.9343 5.0684 42 1 2.0170 7.9230 4.0962 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326065574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:54 Heat of formation + Delta-G solvation = -163.892577 kcal Electronic energy + Delta-G solvation = -24852.225529 eV Core-core repulsion = 21025.624639 eV Total energy + Delta-G solvation = -3826.600890 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.29768 -38.74723 -38.11049 -37.13093 -35.11061 -34.10405 -32.20147 -31.77320 -30.19362 -29.32621 -27.88698 -25.85849 -24.09013 -23.11858 -22.70074 -21.48242 -19.79428 -19.44481 -17.39551 -17.17914 -17.11355 -16.83240 -16.15882 -15.68505 -15.34055 -15.12949 -14.69708 -14.54587 -14.32944 -13.95866 -13.52174 -13.22582 -13.02428 -12.92131 -12.78228 -12.40122 -12.24838 -12.01734 -11.70433 -11.62914 -11.49419 -11.39365 -11.06336 -11.05119 -10.75458 -10.54148 -10.48289 -10.18928 -9.99047 -9.37592 -9.19059 -9.10360 -8.68876 -8.39964 -7.86491 -6.29610 -4.38851 1.85274 2.69302 3.20713 3.27431 3.28420 3.31536 3.66148 3.95450 4.26414 4.54494 4.69431 4.76576 4.84660 4.88801 4.98309 5.02364 5.02975 5.22368 5.48390 5.51856 5.56122 5.61232 5.82525 5.82825 5.87578 6.08704 6.22957 6.37766 6.53729 6.75255 6.81800 6.82939 6.86944 7.19061 7.28872 7.34174 7.73148 7.91612 8.01324 8.09480 8.49359 8.65204 9.30051 9.40828 10.77744 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.026256 B = 0.003034 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.179377 B = 9227.213327 C = 9845.053578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.386 6.386 4 C 0.049 3.951 5 C 0.122 3.878 6 N -0.703 5.703 7 C 0.510 3.490 8 O -0.519 6.519 9 C 0.508 3.492 10 O -0.538 6.538 11 N -0.574 5.574 12 C 0.112 3.888 13 C -0.122 4.122 14 C 0.249 3.751 15 O -0.582 6.582 16 C -0.536 4.536 17 H 0.068 0.932 18 C 0.070 3.930 19 N -0.895 5.895 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.091 3.909 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.414 0.586 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.383 0.617 40 H 0.271 0.729 41 H 0.088 0.912 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.362 -14.592 -12.678 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.305 6.305 4 C -0.027 4.027 5 C -0.001 4.001 6 N -0.358 5.358 7 C 0.292 3.708 8 O -0.395 6.395 9 C 0.290 3.710 10 O -0.417 6.417 11 N -0.306 5.306 12 C -0.011 4.011 13 C -0.160 4.160 14 C 0.208 3.792 15 O -0.391 6.391 16 C -0.574 4.574 17 H 0.086 0.914 18 C -0.133 4.133 19 N -0.533 5.533 20 Si 0.733 3.267 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.030 4.030 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.251 0.749 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.234 0.766 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.177 -14.312 -13.289 19.566 hybrid contribution -0.699 -0.051 1.395 1.561 sum -1.875 -14.363 -11.895 18.743 Atomic orbital electron populations 1.21751 0.93602 1.02237 1.03440 1.22478 0.95821 0.83553 1.00062 1.87970 1.20478 1.26659 1.95443 1.22771 0.82227 0.96247 1.01499 1.21444 1.00267 0.91142 0.87273 1.45658 1.59426 1.09963 1.20707 1.20404 0.79925 0.82586 0.87934 1.90722 1.40130 1.62316 1.46310 1.19558 0.81931 0.82317 0.87180 1.90722 1.42641 1.61902 1.46455 1.48639 1.53545 1.07264 1.21162 1.22147 0.97114 0.90011 0.91814 1.22726 1.02285 0.94566 0.96398 1.19631 0.81248 0.89589 0.88751 1.86109 1.32651 1.88179 1.32144 1.21485 1.42632 0.98857 0.94471 0.91351 1.25098 0.94316 0.96201 0.97698 1.69654 1.47759 1.24305 1.11630 0.86372 0.79279 0.82172 0.78907 1.20415 1.21002 1.19660 1.23499 0.99902 0.94443 0.85160 0.91559 0.91833 0.91117 0.93416 0.93233 0.91415 0.92263 0.90218 0.89507 0.74915 0.91182 0.91752 0.90384 0.90507 0.76615 0.91926 0.89322 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.43 6.66 37.16 0.25 0.68 16 3 O -0.39 -3.90 10.29 -35.23 -0.36 -4.27 16 4 C 0.05 0.40 6.07 37.16 0.23 0.62 16 5 C 0.12 1.27 6.06 -4.04 -0.02 1.25 16 6 N -0.70 -9.69 5.50 -60.73 -0.33 -10.03 16 7 C 0.51 8.94 7.86 -11.58 -0.09 8.85 16 8 O -0.52 -9.66 14.12 5.50 0.08 -9.58 16 9 C 0.51 10.52 7.91 -11.59 -0.09 10.43 16 10 O -0.54 -12.10 16.73 5.50 0.09 -12.01 16 11 N -0.57 -12.45 3.33 -170.99 -0.57 -13.02 16 12 C 0.11 2.21 5.49 -3.04 -0.02 2.19 16 13 C -0.12 -2.52 6.13 -24.88 -0.15 -2.67 16 14 C 0.25 6.07 0.88 -89.61 -0.08 5.99 16 15 O -0.58 -14.98 13.17 -35.23 -0.46 -15.44 16 16 C -0.54 -13.88 8.26 -34.44 -0.28 -14.17 16 17 H 0.07 1.73 7.78 -52.49 -0.41 1.32 16 18 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 19 N -0.89 -23.63 10.69 55.43 0.59 -23.04 16 20 Si 0.91 20.23 29.54 -169.99 -5.02 15.21 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 C 0.09 2.19 5.50 -2.52 -0.01 2.17 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.41 5.55 7.94 -40.82 -0.32 5.23 16 35 H 0.07 1.39 7.58 -51.93 -0.39 1.00 16 36 H 0.06 1.17 7.70 -51.93 -0.40 0.77 16 37 H 0.08 1.50 8.03 -51.93 -0.42 1.09 16 38 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 39 H 0.38 10.08 7.26 45.56 0.33 10.41 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.09 2.36 7.47 -51.93 -0.39 1.97 16 42 H 0.07 1.65 8.03 -51.93 -0.42 1.23 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -30.08 352.58 -6.45 -36.52 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -5.78 Total: 13.98 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 0.01 Total: 16.36 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.31 Total: -46.08 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -0.66 Total: -41.30 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.08 -6.45 -36.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326065574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.371 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds