Wall clock time and date at job start Tue Mar 31 2020 04:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47109 * 2 1 4 4 C 1.42905 * 113.99885 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46994 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47195 * 64.99781 * 5 4 3 7 7 C 1.34777 * 119.99846 * 179.97438 * 6 5 4 8 8 O 1.21350 * 119.99865 * 359.97438 * 7 6 5 9 9 C 1.49449 * 119.99831 * 180.02562 * 7 6 5 10 10 O 1.21349 * 119.99754 * 359.97438 * 9 7 6 11 11 N 1.34772 * 119.99933 * 180.02562 * 9 7 6 12 12 C 1.47021 * 125.64937 * 359.94885 * 11 9 7 13 13 C 1.54370 * 107.28813 * 181.13182 * 12 11 9 14 14 C 1.55147 * 102.92092 * 22.14333 * 13 12 11 15 15 O 1.42905 * 111.00578 * 82.63751 * 14 13 12 16 16 C 1.50702 * 111.00308 * 206.45025 * 14 13 12 17 17 H 1.08002 * 120.00299 * 356.82421 * 16 14 13 18 18 C 1.37884 * 119.99942 * 176.53980 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.47423 * 125.64837 * 179.97438 * 11 9 7 25 25 H 1.09002 * 109.47011 * 299.99921 * 1 2 3 26 26 H 1.08998 * 109.47011 * 59.99993 * 1 2 3 27 27 H 1.08999 * 109.46966 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47097 * 239.99531 * 2 1 3 29 29 H 1.09002 * 109.47463 * 119.99793 * 2 1 3 30 30 H 1.08997 * 109.47225 * 59.99809 * 4 3 2 31 31 H 1.09003 * 109.46913 * 299.99417 * 4 3 2 32 32 H 1.09002 * 109.47198 * 304.99662 * 5 4 3 33 33 H 1.08997 * 109.47249 * 184.99637 * 5 4 3 34 34 H 0.96999 * 119.99794 * 359.97438 * 6 5 4 35 35 H 1.09001 * 109.88518 * 300.52094 * 12 11 9 36 36 H 1.09002 * 109.88165 * 61.68403 * 12 11 9 37 37 H 1.09001 * 110.70699 * 263.79361 * 13 12 11 38 38 H 1.09008 * 110.75075 * 140.51110 * 13 12 11 39 39 H 0.96701 * 113.99475 * 183.17547 * 15 14 13 40 40 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 41 41 H 1.08996 * 110.36708 * 36.99367 * 24 11 9 42 42 H 1.08999 * 110.36888 * 274.67114 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 7 3.3878 3.5611 1.2506 7 6 3.6294 4.8681 1.4735 8 8 4.2099 5.5290 0.6375 9 6 3.1835 5.5033 2.7507 10 8 2.6034 4.8422 3.5869 11 7 3.4247 6.8104 2.9734 12 6 4.1140 7.7239 2.0505 13 6 4.1836 9.1043 2.7380 14 6 4.0313 8.7514 4.2411 15 8 5.2829 8.3505 4.8024 16 6 3.4428 9.9060 5.0101 17 1 3.2376 10.8403 4.5087 18 6 3.1607 9.7678 6.3527 19 7 3.4105 8.6301 6.9633 20 14 2.4240 11.1965 7.3042 21 1 0.9423 11.1227 7.2396 22 1 2.8618 11.1256 8.7214 23 1 2.8823 12.4771 6.7081 24 6 3.0414 7.5609 4.1831 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8333 0.9766 -0.8908 31 1 3.8340 0.9765 0.8892 32 1 3.3493 3.4411 -0.8430 33 1 4.9082 3.0254 -0.0911 34 1 2.9241 3.0327 1.9190 35 1 5.1214 7.3587 1.8508 36 1 3.5541 7.8014 1.1185 37 1 3.3638 9.7417 2.4065 38 1 5.1452 9.5817 2.5494 39 1 5.2284 8.0737 5.7274 40 1 3.2124 8.5330 7.9080 41 1 3.1494 6.9343 5.0684 42 1 2.0170 7.9230 4.0962 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326065574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:53 Heat of formation + Delta-G solvation = -188.020162 kcal Electronic energy + Delta-G solvation = -24853.271780 eV Core-core repulsion = 21025.624639 eV Total energy + Delta-G solvation = -3827.647141 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.80243 -40.10504 -39.06699 -38.83649 -36.47190 -35.69722 -34.20412 -32.45708 -31.95389 -30.21964 -29.68155 -27.62785 -25.59967 -23.97094 -23.67403 -22.76390 -21.55717 -20.97699 -19.18870 -18.77708 -18.11427 -17.86077 -17.26771 -17.15850 -17.05421 -16.44895 -16.28261 -15.88859 -15.69280 -14.96743 -14.91593 -14.71577 -14.67177 -14.19267 -13.95741 -13.84644 -13.51264 -13.33631 -13.14474 -12.84424 -12.72505 -12.64993 -12.52584 -12.34047 -12.24720 -12.22700 -12.11199 -12.01045 -11.22990 -10.76444 -10.62593 -10.53606 -10.36444 -10.30821 -9.64194 -8.25686 -6.42297 0.34082 1.28426 1.44212 1.46337 1.56038 2.11831 2.37701 2.51038 2.69762 3.00399 3.33418 3.77535 3.85393 4.07037 4.14187 4.15160 4.21280 4.31718 4.32858 4.47431 4.51503 4.55199 4.65596 4.72759 4.78951 4.90083 4.96139 5.04291 5.05933 5.13188 5.17871 5.27745 5.33573 5.43319 5.74809 5.96668 6.05593 6.24085 6.36610 6.61142 6.67656 6.92056 7.28364 7.36035 8.80277 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.026256 B = 0.003034 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.179377 B = 9227.213327 C = 9845.053578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.052 3.948 3 O -0.415 6.415 4 C 0.053 3.947 5 C 0.118 3.882 6 N -0.686 5.686 7 C 0.516 3.484 8 O -0.531 6.531 9 C 0.500 3.500 10 O -0.563 6.563 11 N -0.582 5.582 12 C 0.119 3.881 13 C -0.115 4.115 14 C 0.233 3.767 15 O -0.588 6.588 16 C -0.555 4.555 17 H 0.071 0.929 18 C 0.027 3.973 19 N -0.916 5.916 20 Si 0.967 3.033 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.266 1.266 24 C 0.104 3.896 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.417 0.583 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.376 0.624 40 H 0.271 0.729 41 H 0.056 0.944 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 -15.189 -14.163 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 O -0.335 6.335 4 C -0.024 4.024 5 C -0.004 4.004 6 N -0.340 5.340 7 C 0.296 3.704 8 O -0.408 6.408 9 C 0.284 3.716 10 O -0.443 6.443 11 N -0.314 5.314 12 C -0.003 4.003 13 C -0.153 4.153 14 C 0.193 3.807 15 O -0.397 6.397 16 C -0.593 4.593 17 H 0.089 0.911 18 C -0.174 4.174 19 N -0.555 5.555 20 Si 0.792 3.208 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.191 1.191 24 C -0.018 4.018 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.109 0.891 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.253 0.747 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.226 0.774 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.063 -14.942 -14.813 21.067 hybrid contribution -0.748 0.038 1.839 1.986 sum -1.811 -14.904 -12.974 19.843 Atomic orbital electron populations 1.21787 0.93761 1.03237 1.02347 1.22643 0.95792 0.82659 1.01299 1.87930 1.21564 1.28322 1.95714 1.22836 0.81624 0.94518 1.03401 1.21750 1.01085 0.92490 0.85119 1.45719 1.57914 1.08514 1.21820 1.19748 0.80436 0.83737 0.86445 1.90715 1.41127 1.62841 1.46100 1.20281 0.81159 0.81898 0.88275 1.90697 1.43566 1.62375 1.47678 1.48692 1.53986 1.08017 1.20727 1.22173 0.97254 0.88945 0.91885 1.22740 1.03452 0.95488 0.93635 1.19864 0.80740 0.89341 0.90788 1.86101 1.33643 1.88238 1.31679 1.21775 1.42991 0.99421 0.95098 0.91088 1.25835 0.94641 0.98371 0.98595 1.69762 1.48270 1.25737 1.11746 0.85414 0.78433 0.79466 0.77467 1.20148 1.20928 1.19086 1.23094 0.99397 0.94183 0.85163 0.93106 0.92424 0.89124 0.91617 0.92457 0.88508 0.91218 0.90593 0.88078 0.74656 0.91149 0.89756 0.88892 0.89556 0.77419 0.91969 0.92578 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16 2 C 0.05 0.67 6.66 71.98 0.48 1.15 16 3 O -0.41 -7.62 10.29 -148.98 -1.53 -9.15 16 4 C 0.05 0.71 6.07 71.98 0.44 1.14 16 5 C 0.12 2.19 6.06 86.38 0.52 2.71 16 6 N -0.69 -18.00 5.50 -464.40 -2.55 -20.56 16 7 C 0.52 17.59 7.86 87.27 0.69 18.28 16 8 O -0.53 -18.93 14.12 -3.25 -0.05 -18.97 16 9 C 0.50 20.78 7.91 87.27 0.69 21.47 16 10 O -0.56 -25.74 16.73 -3.24 -0.05 -25.79 16 11 N -0.58 -25.33 3.33 -813.24 -2.70 -28.03 16 12 C 0.12 4.58 5.49 86.75 0.48 5.05 16 13 C -0.12 -4.65 6.13 31.80 0.19 -4.45 16 14 C 0.23 11.45 0.88 -10.14 -0.01 11.44 16 15 O -0.59 -30.74 13.17 -148.98 -1.96 -32.71 16 16 C -0.55 -28.76 8.26 25.60 0.21 -28.55 16 17 H 0.07 3.56 7.78 -2.91 -0.02 3.53 16 18 C 0.03 1.37 5.29 84.66 0.45 1.82 16 19 N -0.92 -49.28 10.69 21.45 0.23 -49.05 16 20 Si 0.97 41.43 29.54 68.60 2.03 43.45 16 21 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 C 0.10 5.12 5.50 86.86 0.48 5.60 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.42 10.74 7.94 -92.71 -0.74 10.01 16 35 H 0.07 2.71 7.58 -2.39 -0.02 2.69 16 36 H 0.08 2.91 7.70 -2.39 -0.02 2.89 16 37 H 0.09 3.43 8.03 -2.39 -0.02 3.41 16 38 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 39 H 0.38 20.41 7.26 -74.06 -0.54 19.87 16 40 H 0.27 13.95 8.31 -92.70 -0.77 13.18 16 41 H 0.06 3.10 7.47 -2.39 -0.02 3.09 16 42 H 0.06 2.87 8.03 -2.39 -0.02 2.85 16 Total: -1.00 -64.57 352.58 -1.48 -66.05 By element: Atomic # 1 Polarization: 40.58 SS G_CDS: -0.23 Total: 40.35 kcal Atomic # 6 Polarization: 29.06 SS G_CDS: 5.36 Total: 34.41 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -5.03 Total: -97.64 kcal Atomic # 8 Polarization: -83.03 SS G_CDS: -3.60 Total: -86.62 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -64.57 -1.48 -66.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326065574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.970 kcal (2) G-P(sol) polarization free energy of solvation -64.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds