Wall clock time and date at job start Tue Mar 31 2020 04:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00226 * 2 1 4 4 C 1.50700 * 109.47255 * 179.97438 * 3 2 1 5 5 O 1.21285 * 119.99953 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00392 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99496 * 0.02562 * 6 4 3 8 8 C 1.46494 * 120.00264 * 180.02562 * 6 4 3 9 9 C 1.50695 * 109.47561 * 89.99804 * 8 6 4 10 10 O 1.21280 * 119.99679 * 0.02562 * 9 8 6 11 11 N 1.34775 * 120.00178 * 179.97438 * 9 8 6 12 12 C 1.47022 * 125.65138 * 359.97438 * 11 9 8 13 13 C 1.54322 * 107.27482 * 178.98361 * 12 11 9 14 14 C 1.55157 * 102.93912 * 337.80443 * 13 12 11 15 15 O 1.42900 * 111.00520 * 277.38901 * 14 13 12 16 16 C 1.50702 * 111.00344 * 153.57728 * 14 13 12 17 17 H 1.08002 * 120.00299 * 241.45696 * 16 14 13 18 18 C 1.37884 * 119.99942 * 61.17254 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.47424 * 125.64952 * 180.02562 * 11 9 8 25 25 H 1.09002 * 109.46706 * 60.00007 * 1 2 3 26 26 H 1.09002 * 109.47195 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47075 * 300.00294 * 1 2 3 28 28 H 1.08993 * 109.47359 * 59.99692 * 3 2 1 29 29 H 1.08998 * 109.46759 * 299.99656 * 3 2 1 30 30 H 1.09006 * 109.47007 * 269.99446 * 7 6 4 31 31 H 1.08994 * 109.47360 * 29.99878 * 7 6 4 32 32 H 1.09002 * 109.46976 * 150.00361 * 7 6 4 33 33 H 1.09005 * 109.47174 * 329.99313 * 8 6 4 34 34 H 1.09003 * 109.47276 * 209.99791 * 8 6 4 35 35 H 1.09003 * 109.88076 * 59.56192 * 12 11 9 36 36 H 1.09003 * 109.88029 * 298.40050 * 12 11 9 37 37 H 1.08995 * 110.71729 * 219.44160 * 13 12 11 38 38 H 1.08996 * 110.71909 * 96.16437 * 13 12 11 39 39 H 0.96704 * 113.99783 * 295.41666 * 15 14 13 40 40 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 41 41 H 1.09007 * 110.36818 * 85.24741 * 24 11 9 42 42 H 1.09006 * 110.37032 * 322.92419 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2766 2.2966 0.0002 7 6 3.6465 3.6193 -0.0003 8 6 5.7369 2.1809 0.0003 9 6 6.2378 2.1406 -1.4204 10 8 5.4522 2.2030 -2.3423 11 7 7.5588 2.0364 -1.6666 12 6 8.6163 1.9541 -0.6485 13 6 9.9609 1.8213 -1.3942 14 6 9.5364 1.2671 -2.7799 15 8 9.3621 -0.1504 -2.7331 16 6 10.5327 1.6510 -3.8434 17 1 10.2233 2.2634 -4.6774 18 6 11.8408 1.2253 -3.7486 19 7 12.2176 0.4796 -2.7330 20 14 13.0775 1.7076 -5.0628 21 1 13.7278 2.9879 -4.6846 22 1 14.1086 0.6461 -5.1856 23 1 12.3793 1.8723 -6.3631 24 6 8.1828 1.9870 -3.0014 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6887 1.8463 0.8899 29 1 1.6887 1.8462 -0.8900 30 1 3.4904 3.9469 -1.0281 31 1 2.6868 3.5648 0.5135 32 1 4.2938 4.3302 0.5133 33 1 6.0289 1.2652 0.5146 34 1 6.1695 3.0396 0.5138 35 1 8.4551 1.0809 -0.0163 36 1 8.6172 2.8592 -0.0410 37 1 10.6178 1.1181 -0.8823 38 1 10.4416 2.7939 -1.4986 39 1 10.1747 -0.6407 -2.5474 40 1 13.1378 0.1798 -2.6665 41 1 8.3471 2.9956 -3.3809 42 1 7.5590 1.4182 -3.6910 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332507455.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:35 Heat of formation + Delta-G solvation = -174.278774 kcal Electronic energy + Delta-G solvation = -25194.248607 eV Core-core repulsion = 21367.197338 eV Total energy + Delta-G solvation = -3827.051269 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52647 -40.57409 -39.00665 -38.35468 -36.53182 -36.08767 -34.22878 -32.05670 -30.89412 -30.02897 -28.89956 -27.48345 -26.98325 -25.95693 -23.88850 -21.75290 -21.01284 -20.03412 -19.15099 -18.52844 -18.37489 -17.80220 -17.27681 -16.98446 -16.82548 -16.72764 -16.14365 -16.10418 -15.48733 -15.43463 -15.01454 -14.76249 -14.10608 -14.04231 -13.94669 -13.78210 -13.53684 -13.34479 -13.24913 -13.17150 -13.02958 -12.83541 -12.62815 -12.47806 -12.33949 -12.28651 -11.85840 -11.29228 -11.21341 -10.95217 -10.77243 -10.66309 -10.16959 -9.80206 -9.59812 -8.24343 -6.40040 1.31846 1.41548 1.45067 1.53834 1.57031 1.67334 2.16950 2.40180 2.96708 3.00257 3.51618 3.53868 3.81237 3.99977 4.04416 4.11541 4.21600 4.29298 4.32753 4.34707 4.41152 4.49672 4.57007 4.59558 4.68060 4.69807 4.85967 4.86979 4.94202 5.16883 5.19609 5.31939 5.45135 5.55151 5.77005 5.98724 6.06890 6.27887 6.58197 6.64624 7.01889 7.12092 7.30173 7.38615 8.81320 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.033620 B = 0.003049 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.637384 B = 9181.797610 C = 9349.588088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.053 3.947 4 C 0.503 3.497 5 O -0.578 6.578 6 N -0.598 5.598 7 C 0.069 3.931 8 C 0.109 3.891 9 C 0.500 3.500 10 O -0.590 6.590 11 N -0.610 5.610 12 C 0.102 3.898 13 C -0.125 4.125 14 C 0.230 3.770 15 O -0.597 6.597 16 C -0.562 4.562 17 H 0.054 0.946 18 C 0.036 3.964 19 N -0.906 5.906 20 Si 0.961 3.039 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.278 1.278 24 C 0.127 3.873 25 H 0.056 0.944 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.124 0.876 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.157 0.843 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.378 0.622 40 H 0.271 0.729 41 H 0.077 0.923 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.770 9.588 12.064 22.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.026 4.026 4 C 0.292 3.708 5 O -0.457 6.457 6 N -0.331 5.331 7 C -0.072 4.072 8 C -0.017 4.017 9 C 0.289 3.711 10 O -0.471 6.471 11 N -0.343 5.343 12 C -0.020 4.020 13 C -0.163 4.163 14 C 0.190 3.810 15 O -0.405 6.405 16 C -0.600 4.600 17 H 0.072 0.928 18 C -0.165 4.165 19 N -0.545 5.545 20 Si 0.787 3.213 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.203 1.203 24 C 0.004 3.996 25 H 0.074 0.926 26 H 0.111 0.889 27 H 0.086 0.914 28 H 0.142 0.858 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.175 0.825 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.227 0.773 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -17.382 8.979 11.582 22.735 hybrid contribution 1.459 -0.179 -1.127 1.852 sum -15.923 8.801 10.455 20.983 Atomic orbital electron populations 1.23053 0.78034 1.04194 1.01820 1.87978 1.22452 1.26909 1.95794 1.22388 0.88276 0.86739 1.05215 1.21194 0.90846 0.83659 0.75076 1.90720 1.75813 1.28680 1.50465 1.47536 1.04958 1.07965 1.72672 1.22243 1.00522 0.81460 1.02959 1.21384 0.81479 1.07265 0.91586 1.21625 0.80394 0.75693 0.93437 1.90617 1.55395 1.52972 1.48098 1.48715 1.05844 1.70833 1.08869 1.22314 0.86666 1.02463 0.90533 1.22938 0.94743 1.01562 0.97107 1.19854 0.89569 0.78551 0.93023 1.86154 1.38665 1.20772 1.94954 1.21643 0.94851 1.34126 1.09385 0.92779 1.25625 0.99516 0.93988 0.97405 1.69791 1.19009 1.35294 1.30375 0.85509 0.78334 0.78213 0.79245 1.19438 1.20659 1.20323 1.22119 0.93627 0.99328 0.84560 0.92559 0.88888 0.91372 0.85828 0.88274 0.92941 0.87407 0.87897 0.87759 0.82529 0.91418 0.87854 0.90753 0.91371 0.77320 0.91931 0.90449 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -10.60 10.24 -129.94 -1.33 -11.93 16 3 C 0.05 1.05 4.97 71.24 0.35 1.40 16 4 C 0.50 15.12 7.75 87.66 0.68 15.80 16 5 O -0.58 -24.39 16.08 15.99 0.26 -24.13 16 6 N -0.60 -14.48 2.36 -851.13 -2.01 -16.49 16 7 C 0.07 0.88 10.29 127.77 1.31 2.20 16 8 C 0.11 2.90 5.12 85.63 0.44 3.34 16 9 C 0.50 19.01 7.92 87.66 0.69 19.70 16 10 O -0.59 -27.02 16.69 -3.03 -0.05 -27.07 16 11 N -0.61 -24.16 3.33 -811.78 -2.70 -26.86 16 12 C 0.10 3.42 6.49 86.73 0.56 3.99 16 13 C -0.12 -5.24 5.38 31.78 0.17 -5.07 16 14 C 0.23 11.42 0.88 -10.15 -0.01 11.42 16 15 O -0.60 -32.28 13.18 -148.98 -1.96 -34.24 16 16 C -0.56 -29.82 8.27 25.60 0.21 -29.61 16 17 H 0.05 2.89 7.79 -2.91 -0.02 2.87 16 18 C 0.04 1.86 5.27 84.66 0.45 2.30 16 19 N -0.91 -46.56 10.73 21.45 0.23 -46.33 16 20 Si 0.96 41.28 29.54 68.60 2.03 43.30 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 C 0.13 5.92 6.08 86.86 0.53 6.45 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.12 1.27 7.40 -2.39 -0.02 1.25 16 29 H 0.10 1.60 8.11 -2.39 -0.02 1.58 16 30 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.11 0.59 6.44 -2.39 -0.02 0.58 16 32 H 0.10 0.78 7.89 -2.39 -0.02 0.76 16 33 H 0.10 3.03 7.42 -2.38 -0.02 3.01 16 34 H 0.16 2.51 7.89 -2.39 -0.02 2.49 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.07 3.31 7.54 -2.39 -0.02 3.29 16 38 H 0.07 2.82 8.03 -2.39 -0.02 2.81 16 39 H 0.38 20.26 7.51 -74.05 -0.56 19.70 16 40 H 0.27 13.26 8.31 -92.70 -0.77 12.49 16 41 H 0.08 3.45 8.03 -2.38 -0.02 3.43 16 42 H 0.04 1.86 8.04 -2.38 -0.02 1.84 16 Total: -1.00 -80.76 352.14 1.57 -79.19 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: 0.47 Total: 31.06 kcal Atomic # 6 Polarization: 26.87 SS G_CDS: 6.64 Total: 33.51 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -4.48 Total: -89.68 kcal Atomic # 8 Polarization: -94.29 SS G_CDS: -3.09 Total: -97.38 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -80.76 1.57 -79.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332507455.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.089 kcal (2) G-P(sol) polarization free energy of solvation -80.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds