Wall clock time and date at job start Tue Mar 31 2020 04:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 117.00001 * 2 1 4 4 O 1.20826 * 120.00094 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99603 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47240 * 304.99102 * 5 3 2 7 7 O 1.42906 * 109.46354 * 184.99749 * 5 3 2 8 8 C 1.52996 * 109.47427 * 65.00117 * 5 3 2 9 9 C 1.53117 * 109.52034 * 299.68119 * 8 5 3 10 10 C 1.53036 * 109.27942 * 182.44245 * 9 8 5 11 11 N 1.46847 * 109.52433 * 59.17448 * 10 9 8 12 12 C 1.46900 * 111.00023 * 174.15868 * 11 10 9 13 13 C 1.50696 * 109.47558 * 294.21279 * 12 11 10 14 14 O 1.21293 * 119.99836 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99946 * 180.02562 * 13 12 11 16 16 C 1.37099 * 119.99779 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00064 * 359.97438 * 16 15 13 18 18 C 1.38956 * 119.99704 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00316 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99741 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47643 * 59.99423 * 20 18 16 22 22 H 1.48497 * 109.47325 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46788 * 299.99865 * 20 18 16 24 24 C 1.46848 * 111.20085 * 298.26261 * 11 10 9 25 25 C 1.53041 * 109.52263 * 61.73779 * 24 11 10 26 26 H 1.09001 * 109.47157 * 299.99890 * 1 2 3 27 27 H 1.09004 * 109.47122 * 60.00023 * 1 2 3 28 28 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 29 29 H 0.96689 * 114.00548 * 299.99538 * 7 5 3 30 30 H 1.08998 * 109.52141 * 59.86911 * 8 5 3 31 31 H 1.09004 * 109.50402 * 302.38278 * 9 8 5 32 32 H 1.08996 * 109.50540 * 62.49869 * 9 8 5 33 33 H 1.09004 * 109.46381 * 299.16548 * 10 9 8 34 34 H 1.08996 * 109.45534 * 179.18970 * 10 9 8 35 35 H 1.08998 * 109.47168 * 54.21875 * 12 11 10 36 36 H 1.09002 * 109.46991 * 174.20779 * 12 11 10 37 37 H 0.97003 * 120.00179 * 359.97438 * 15 13 12 38 38 H 0.96997 * 119.99901 * 180.02562 * 19 18 16 39 39 H 1.08996 * 109.45969 * 301.72562 * 24 11 10 40 40 H 1.09004 * 109.45271 * 181.74845 * 24 11 10 41 41 H 1.08996 * 109.49801 * 180.87844 * 25 24 11 42 42 H 1.08996 * 109.53189 * 60.78543 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9604 0.7051 0.8410 7 8 3.9718 2.6401 0.1169 8 6 4.1071 0.6929 -1.3082 9 6 3.6799 -0.7722 -1.4316 10 6 4.2742 -1.3659 -2.7108 11 7 5.7386 -1.2666 -2.6636 12 6 6.3498 -1.9505 -3.8110 13 6 6.0822 -3.4304 -3.7148 14 8 5.4452 -3.8720 -2.7818 15 7 6.5514 -4.2632 -4.6649 16 6 6.3074 -5.6095 -4.5776 17 1 5.7395 -6.0026 -3.7473 18 6 6.7907 -6.4681 -5.5574 19 7 7.4812 -5.9897 -6.5679 20 14 6.4588 -8.3025 -5.4381 21 1 4.9933 -8.5419 -5.4424 22 1 7.0773 -8.9939 -6.5976 23 1 7.0428 -8.8302 -4.1787 24 6 6.1739 0.1341 -2.5928 25 6 5.6362 0.7725 -1.3100 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.6562 3.2072 -0.5998 30 1 3.7118 1.2607 -2.1505 31 1 4.0423 -1.3309 -0.5686 32 1 2.5924 -0.8319 -1.4738 33 1 3.9006 -0.8155 -3.5743 34 1 3.9837 -2.4131 -2.7941 35 1 5.9214 -1.5631 -4.7354 36 1 7.4256 -1.7748 -3.8078 37 1 7.0611 -3.9100 -5.4108 38 1 7.8182 -6.5890 -7.2521 39 1 5.7913 0.6774 -3.4567 40 1 7.2631 0.1761 -2.5904 41 1 5.9464 1.8164 -1.2654 42 1 6.0294 0.2388 -0.4448 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340945462.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:17 Heat of formation + Delta-G solvation = -169.892167 kcal Electronic energy + Delta-G solvation = -25059.316050 eV Core-core repulsion = 21232.454999 eV Total energy + Delta-G solvation = -3826.861052 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.06478 -39.27048 -38.04103 -37.18934 -36.21943 -34.02377 -33.34589 -31.22389 -30.72801 -29.33929 -27.70817 -26.19038 -24.34815 -23.05341 -22.49963 -21.20002 -19.87630 -19.16884 -18.33452 -17.84595 -17.63050 -16.85674 -16.08530 -15.96577 -15.51096 -14.99377 -14.76270 -14.50442 -14.22322 -13.89396 -13.80034 -13.64586 -13.48425 -13.04471 -12.96616 -12.55876 -12.36931 -12.10798 -11.87768 -11.72596 -11.46223 -11.41590 -11.15178 -11.02651 -11.01623 -10.74486 -10.57521 -10.44264 -10.23781 -10.20656 -10.01866 -9.44295 -8.40748 -7.96244 -7.80900 -6.40751 -3.81470 1.83648 2.38486 3.20450 3.26158 3.30407 3.83995 3.92067 4.01765 4.25422 4.32372 4.49224 4.61414 4.83644 4.88419 4.93496 5.10667 5.12388 5.24254 5.27983 5.29796 5.39556 5.51416 5.61880 5.69657 5.77281 5.87429 5.89505 6.02207 6.05117 6.11336 6.21629 6.29989 6.44698 6.54964 7.04211 7.33655 7.43745 7.47357 7.55971 8.07595 8.63272 9.19217 9.56005 10.07984 10.77021 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.024626 B = 0.003035 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.724612 B = 9222.607629 C =10110.790423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.345 6.345 3 C 0.435 3.565 4 O -0.508 6.508 5 C 0.125 3.875 6 H 0.140 0.860 7 O -0.530 6.530 8 C -0.114 4.114 9 C -0.112 4.112 10 C 0.055 3.945 11 N -0.515 5.515 12 C 0.046 3.954 13 C 0.444 3.556 14 O -0.577 6.577 15 N -0.565 5.565 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.903 5.903 20 Si 0.930 3.070 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.055 3.945 25 C -0.101 4.101 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.384 0.616 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.018 0.982 34 H 0.106 0.894 35 H 0.046 0.954 36 H 0.088 0.912 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.028 0.972 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.490 15.172 8.148 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.261 6.261 3 C 0.277 3.723 4 O -0.396 6.396 5 C 0.064 3.936 6 H 0.157 0.843 7 O -0.336 6.336 8 C -0.133 4.133 9 C -0.150 4.150 10 C -0.073 4.073 11 N -0.240 5.240 12 C -0.085 4.085 13 C 0.229 3.771 14 O -0.461 6.461 15 N -0.202 5.202 16 C -0.428 4.428 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.544 5.544 20 Si 0.757 3.243 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.074 4.074 25 C -0.138 4.138 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.123 0.877 29 H 0.232 0.768 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.037 0.963 34 H 0.124 0.876 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.619 14.603 9.568 19.049 hybrid contribution -0.590 -0.012 -1.810 1.903 sum -8.209 14.591 7.759 18.452 Atomic orbital electron populations 1.23319 0.76490 1.04059 1.02380 1.86653 1.23369 1.32817 1.83282 1.24993 0.93379 0.81794 0.72118 1.90668 1.67053 1.36509 1.45342 1.21731 0.85019 0.85083 1.01798 0.84254 1.86648 1.75755 1.17990 1.53180 1.21894 0.97828 0.98540 0.95082 1.21734 1.00756 0.92657 0.99846 1.22234 0.86613 1.03400 0.95041 1.61521 1.08285 1.12232 1.41938 1.21835 1.00237 0.94626 0.91833 1.19754 0.85237 0.87158 0.84911 1.90480 1.43916 1.77396 1.34282 1.41869 1.48532 1.07151 1.22611 1.19651 1.32450 0.81710 1.09034 0.87958 1.25253 0.96672 1.00625 0.95382 1.69603 1.36443 1.36437 1.11950 0.85927 0.78698 0.81970 0.77673 1.19943 1.21024 1.19884 1.22102 1.00299 0.88544 0.96412 1.21517 0.92679 1.00690 0.98958 0.91981 0.91904 0.87731 0.76751 0.90909 0.90138 0.90308 0.96348 0.87597 0.93650 0.89377 0.77521 0.91850 0.95419 0.90560 0.90938 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.65 7.85 -39.25 -0.31 -3.96 16 3 C 0.43 4.85 7.14 36.01 0.26 5.11 16 4 O -0.51 -6.80 16.07 -25.46 -0.41 -7.21 16 5 C 0.12 1.21 3.09 -27.88 -0.09 1.12 16 6 H 0.14 1.25 8.14 -51.93 -0.42 0.82 16 7 O -0.53 -5.12 12.37 -55.14 -0.68 -5.80 16 8 C -0.11 -1.16 2.01 -90.50 -0.18 -1.35 16 9 C -0.11 -1.42 4.77 -26.65 -0.13 -1.54 16 10 C 0.05 0.86 5.11 -3.83 -0.02 0.84 16 11 N -0.52 -8.28 4.40 -236.11 -1.04 -9.32 16 12 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 13 C 0.44 10.29 7.46 -10.99 -0.08 10.21 16 14 O -0.58 -15.14 13.90 5.55 0.08 -15.06 16 15 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 16 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 17 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 20 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C 0.05 0.67 5.46 -3.83 -0.02 0.65 16 25 C -0.10 -1.04 5.20 -26.65 -0.14 -1.18 16 26 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 27 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 28 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.38 2.76 8.79 45.56 0.40 3.16 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.08 0.95 5.73 -51.93 -0.30 0.65 16 33 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.11 2.06 5.78 -51.93 -0.30 1.76 16 35 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 36 H 0.09 1.40 7.99 -51.93 -0.41 0.99 16 37 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.88 8.02 -51.93 -0.42 0.46 16 41 H 0.07 0.64 7.77 -51.93 -0.40 0.24 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -32.61 344.04 -6.62 -39.23 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -5.49 Total: 10.92 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 0.40 Total: 8.05 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.37 Total: -47.25 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -1.32 Total: -32.03 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.61 -6.62 -39.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340945462.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.660 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds