Wall clock time and date at job start Tue Mar 31 2020 04:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 117.00001 * 2 1 4 4 O 1.20826 * 120.00094 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99603 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47240 * 304.99102 * 5 3 2 7 7 O 1.42906 * 109.46354 * 184.99749 * 5 3 2 8 8 C 1.52996 * 109.47427 * 65.00117 * 5 3 2 9 9 C 1.53117 * 109.52034 * 299.68119 * 8 5 3 10 10 C 1.53036 * 109.27942 * 182.44245 * 9 8 5 11 11 N 1.46847 * 109.52433 * 59.17448 * 10 9 8 12 12 C 1.46900 * 111.00023 * 174.15868 * 11 10 9 13 13 C 1.50696 * 109.47558 * 294.21279 * 12 11 10 14 14 O 1.21293 * 119.99836 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99946 * 180.02562 * 13 12 11 16 16 C 1.37099 * 119.99779 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00064 * 359.97438 * 16 15 13 18 18 C 1.38956 * 119.99704 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00316 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99741 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47643 * 59.99423 * 20 18 16 22 22 H 1.48497 * 109.47325 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46788 * 299.99865 * 20 18 16 24 24 C 1.46848 * 111.20085 * 298.26261 * 11 10 9 25 25 C 1.53041 * 109.52263 * 61.73779 * 24 11 10 26 26 H 1.09001 * 109.47157 * 299.99890 * 1 2 3 27 27 H 1.09004 * 109.47122 * 60.00023 * 1 2 3 28 28 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 29 29 H 0.96689 * 114.00548 * 299.99538 * 7 5 3 30 30 H 1.08998 * 109.52141 * 59.86911 * 8 5 3 31 31 H 1.09004 * 109.50402 * 302.38278 * 9 8 5 32 32 H 1.08996 * 109.50540 * 62.49869 * 9 8 5 33 33 H 1.09004 * 109.46381 * 299.16548 * 10 9 8 34 34 H 1.08996 * 109.45534 * 179.18970 * 10 9 8 35 35 H 1.08998 * 109.47168 * 54.21875 * 12 11 10 36 36 H 1.09002 * 109.46991 * 174.20779 * 12 11 10 37 37 H 0.97003 * 120.00179 * 359.97438 * 15 13 12 38 38 H 0.96997 * 119.99901 * 180.02562 * 19 18 16 39 39 H 1.08996 * 109.45969 * 301.72562 * 24 11 10 40 40 H 1.09004 * 109.45271 * 181.74845 * 24 11 10 41 41 H 1.08996 * 109.49801 * 180.87844 * 25 24 11 42 42 H 1.08996 * 109.53189 * 60.78543 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9604 0.7051 0.8410 7 8 3.9718 2.6401 0.1169 8 6 4.1071 0.6929 -1.3082 9 6 3.6799 -0.7722 -1.4316 10 6 4.2742 -1.3659 -2.7108 11 7 5.7386 -1.2666 -2.6636 12 6 6.3498 -1.9505 -3.8110 13 6 6.0822 -3.4304 -3.7148 14 8 5.4452 -3.8720 -2.7818 15 7 6.5514 -4.2632 -4.6649 16 6 6.3074 -5.6095 -4.5776 17 1 5.7395 -6.0026 -3.7473 18 6 6.7907 -6.4681 -5.5574 19 7 7.4812 -5.9897 -6.5679 20 14 6.4588 -8.3025 -5.4381 21 1 4.9933 -8.5419 -5.4424 22 1 7.0773 -8.9939 -6.5976 23 1 7.0428 -8.8302 -4.1787 24 6 6.1739 0.1341 -2.5928 25 6 5.6362 0.7725 -1.3100 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.6562 3.2072 -0.5998 30 1 3.7118 1.2607 -2.1505 31 1 4.0423 -1.3309 -0.5686 32 1 2.5924 -0.8319 -1.4738 33 1 3.9006 -0.8155 -3.5743 34 1 3.9837 -2.4131 -2.7941 35 1 5.9214 -1.5631 -4.7354 36 1 7.4256 -1.7748 -3.8078 37 1 7.0611 -3.9100 -5.4108 38 1 7.8182 -6.5890 -7.2521 39 1 5.7913 0.6774 -3.4567 40 1 7.2631 0.1761 -2.5904 41 1 5.9464 1.8164 -1.2654 42 1 6.0294 0.2388 -0.4448 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340945462.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:16 Heat of formation + Delta-G solvation = -194.860311 kcal Electronic energy + Delta-G solvation = -25060.398750 eV Core-core repulsion = 21232.454999 eV Total energy + Delta-G solvation = -3827.943752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.92318 -40.59765 -39.41254 -38.19056 -37.16608 -35.91144 -34.50128 -33.22286 -31.73800 -30.36072 -28.75050 -27.42880 -25.99352 -24.08024 -23.62786 -22.02977 -21.01769 -20.81760 -19.84021 -19.15287 -18.47377 -17.76039 -17.62546 -16.91186 -16.66107 -16.47433 -16.27036 -15.79509 -15.42572 -15.27839 -14.98787 -14.96290 -14.44117 -14.19206 -13.97913 -13.74698 -13.49490 -13.34118 -13.14748 -12.94285 -12.86989 -12.63322 -12.52549 -12.40293 -12.12562 -12.07989 -11.88728 -11.67018 -11.56794 -11.45112 -11.22230 -10.90466 -10.19031 -9.96498 -9.12097 -8.43929 -5.92248 0.97902 1.41212 1.42812 1.53584 1.63576 2.09601 2.30487 2.83235 3.11341 3.23225 3.43157 3.48584 3.69673 3.80283 4.02015 4.22778 4.25535 4.29491 4.30852 4.32465 4.39482 4.52987 4.55292 4.59932 4.67267 4.68779 4.78619 4.90802 5.04259 5.11394 5.23907 5.26520 5.33061 5.43211 5.48125 5.94593 6.15052 6.34098 6.39874 6.64304 6.64970 7.16195 7.60508 8.16584 8.73400 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.024626 B = 0.003035 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.724612 B = 9222.607629 C =10110.790423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.354 6.354 3 C 0.436 3.564 4 O -0.533 6.533 5 C 0.134 3.866 6 H 0.148 0.852 7 O -0.535 6.535 8 C -0.103 4.103 9 C -0.104 4.104 10 C 0.057 3.943 11 N -0.533 5.533 12 C 0.057 3.943 13 C 0.442 3.558 14 O -0.611 6.611 15 N -0.576 5.576 16 C -0.332 4.332 17 H 0.079 0.921 18 C -0.014 4.014 19 N -0.922 5.922 20 Si 0.992 3.008 21 H -0.272 1.272 22 H -0.272 1.272 23 H -0.272 1.272 24 C 0.053 3.947 25 C -0.095 4.095 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.125 0.875 29 H 0.395 0.605 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.027 0.973 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.395 0.605 38 H 0.277 0.723 39 H 0.041 0.959 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.241 16.344 8.156 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.270 6.270 3 C 0.280 3.720 4 O -0.423 6.423 5 C 0.073 3.927 6 H 0.165 0.835 7 O -0.342 6.342 8 C -0.122 4.122 9 C -0.141 4.141 10 C -0.071 4.071 11 N -0.259 5.259 12 C -0.074 4.074 13 C 0.229 3.771 14 O -0.497 6.497 15 N -0.214 5.214 16 C -0.461 4.461 17 H 0.097 0.903 18 C -0.213 4.213 19 N -0.564 5.564 20 Si 0.815 3.185 21 H -0.197 1.197 22 H -0.196 1.196 23 H -0.197 1.197 24 C -0.074 4.074 25 C -0.133 4.133 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.143 0.857 29 H 0.245 0.755 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.229 0.771 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.364 15.801 9.566 19.885 hybrid contribution -0.713 -0.341 -1.784 1.951 sum -8.078 15.460 7.783 19.100 Atomic orbital electron populations 1.23548 0.75229 1.05539 1.02567 1.86641 1.24736 1.32654 1.82949 1.25288 0.93913 0.81508 0.71302 1.90656 1.67717 1.37236 1.46646 1.21651 0.83991 0.85382 1.01665 0.83510 1.86637 1.75724 1.17895 1.53948 1.21767 0.97935 0.96646 0.95857 1.21612 1.00733 0.94154 0.97625 1.22099 0.86950 1.01021 0.97013 1.61504 1.08277 1.14813 1.41266 1.21715 1.01825 0.90447 0.93417 1.20803 0.83373 0.89439 0.83486 1.90461 1.44983 1.78788 1.35494 1.41944 1.49306 1.06743 1.23397 1.19627 1.33782 0.83423 1.09285 0.90267 1.26016 0.96030 1.04556 0.94701 1.69667 1.36587 1.37866 1.12242 0.85010 0.78599 0.76902 0.77965 1.19691 1.19620 1.19731 1.22236 1.01133 0.86165 0.97863 1.21501 0.92357 1.01747 0.97659 0.91688 0.91855 0.85695 0.75461 0.89865 0.91507 0.89947 0.95439 0.92059 0.91900 0.87215 0.77119 0.91380 0.94079 0.89445 0.88534 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.56 113.37 1.20 1.57 16 2 O -0.35 -7.13 7.85 -51.40 -0.40 -7.54 16 3 C 0.44 9.15 7.14 71.24 0.51 9.66 16 4 O -0.53 -13.62 16.07 28.38 0.46 -13.16 16 5 C 0.13 2.32 3.09 29.85 0.09 2.41 16 6 H 0.15 2.34 8.14 -2.39 -0.02 2.32 16 7 O -0.53 -8.94 12.37 -129.95 -1.61 -10.55 16 8 C -0.10 -1.87 2.01 -10.72 -0.02 -1.89 16 9 C -0.10 -2.53 4.77 30.65 0.15 -2.39 16 10 C 0.06 1.77 5.11 86.33 0.44 2.21 16 11 N -0.53 -16.52 4.40 -900.93 -3.96 -20.48 16 12 C 0.06 1.95 5.45 85.56 0.47 2.42 16 13 C 0.44 20.83 7.46 87.66 0.65 21.49 16 14 O -0.61 -33.24 13.90 -3.07 -0.04 -33.28 16 15 N -0.58 -29.48 5.29 -306.99 -1.62 -31.10 16 16 C -0.33 -18.78 9.68 84.04 0.81 -17.96 16 17 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 18 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 19 N -0.92 -49.83 13.05 21.66 0.28 -49.54 16 20 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 C 0.05 1.15 5.46 86.33 0.47 1.62 16 25 C -0.10 -1.70 5.20 30.65 0.16 -1.54 16 26 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 27 H 0.06 0.95 8.13 -2.38 -0.02 0.93 16 28 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.39 4.63 8.79 -74.06 -0.65 3.97 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.08 1.94 5.73 -2.39 -0.01 1.93 16 33 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 2.47 5.78 -2.39 -0.01 2.46 16 35 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 36 H 0.11 3.28 7.99 -2.39 -0.02 3.26 16 37 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 38 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 39 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 1.72 8.02 -2.39 -0.02 1.70 16 41 H 0.10 1.33 7.77 -2.39 -0.02 1.31 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -71.11 344.04 0.19 -70.92 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.33 Total: 32.50 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 5.39 Total: 17.34 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -5.30 Total: -101.13 kcal Atomic # 8 Polarization: -62.93 SS G_CDS: -1.60 Total: -64.52 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -71.11 0.19 -70.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340945462.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.940 kcal (2) G-P(sol) polarization free energy of solvation -71.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds