Wall clock time and date at job start Tue Mar 31 2020 04:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00248 * 2 1 4 4 C 1.52997 * 110.74976 * 54.68652 * 3 2 1 5 5 N 1.46505 * 109.47102 * 60.02601 * 4 3 2 6 6 C 1.34780 * 120.00054 * 175.16483 * 5 4 3 7 7 O 1.21355 * 119.99810 * 0.02562 * 6 5 4 8 8 C 1.49448 * 119.99923 * 179.97438 * 6 5 4 9 9 O 1.21347 * 119.99897 * 0.02562 * 8 6 5 10 10 N 1.34772 * 119.99736 * 179.97438 * 8 6 5 11 11 C 1.46505 * 119.99867 * 180.02562 * 10 8 6 12 12 C 1.53003 * 109.47205 * 180.02562 * 11 10 8 13 13 C 1.50702 * 109.47002 * 179.97438 * 12 11 10 14 14 H 1.07992 * 119.99871 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99849 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00179 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00145 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47219 * 89.99891 * 17 15 13 19 19 H 1.48500 * 109.47137 * 210.00153 * 17 15 13 20 20 H 1.48499 * 109.46973 * 329.99836 * 17 15 13 21 21 C 1.55308 * 110.84673 * 291.21624 * 3 2 1 22 22 C 1.55497 * 100.69416 * 275.83671 * 21 3 2 23 23 O 1.43648 * 105.17873 * 323.57755 * 22 21 3 24 24 C 1.43232 * 109.97442 * 24.43844 * 23 22 21 25 25 H 1.08998 * 109.47044 * 294.88692 * 1 2 3 26 26 H 1.08998 * 109.46910 * 174.88259 * 1 2 3 27 27 H 1.09001 * 109.46643 * 54.87890 * 1 2 3 28 28 H 1.09006 * 109.47217 * 180.02562 * 4 3 2 29 29 H 1.08998 * 109.47748 * 300.02602 * 4 3 2 30 30 H 0.96996 * 120.00008 * 355.16547 * 5 4 3 31 31 H 0.96996 * 120.00685 * 0.02562 * 10 8 6 32 32 H 1.09001 * 109.46967 * 300.00168 * 11 10 8 33 33 H 1.09001 * 109.47408 * 60.00340 * 11 10 8 34 34 H 1.09001 * 109.47061 * 299.99823 * 12 11 10 35 35 H 1.09001 * 109.46895 * 59.99739 * 12 11 10 36 36 H 0.96998 * 120.00384 * 180.02562 * 16 15 13 37 37 H 1.08998 * 111.12119 * 33.86133 * 21 3 2 38 38 H 1.09003 * 111.12190 * 158.02330 * 21 3 2 39 39 H 1.09003 * 110.28070 * 204.65426 * 22 21 3 40 40 H 1.08999 * 110.29640 * 82.51189 * 22 21 3 41 41 H 1.09002 * 109.83369 * 238.77715 * 24 23 22 42 42 H 1.09001 * 109.91106 * 117.83543 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.4753 2.1371 1.1675 5 7 1.8048 1.4733 2.4313 6 6 1.5175 2.0742 3.6030 7 8 0.9854 3.1648 3.6112 8 6 1.8532 1.3968 4.8922 9 8 2.3848 0.3060 4.8840 10 7 1.5664 1.9979 6.0638 11 6 1.8959 1.3341 7.3276 12 6 1.4683 2.2230 8.4972 13 6 1.8067 1.5399 9.7972 14 1 2.2791 0.5688 9.7899 15 6 1.5132 2.1548 10.9958 16 7 0.9374 3.3372 11.0048 17 14 1.9333 1.3084 12.6072 18 1 3.3033 1.6971 13.0280 19 1 0.9597 1.7192 13.6506 20 1 1.8707 -0.1639 12.4241 21 6 1.7553 2.0240 -1.3530 22 6 2.9250 1.4566 -2.2061 23 8 4.0318 1.3417 -1.2975 24 6 3.5511 1.2209 0.0463 25 1 -0.3633 0.4325 0.9322 26 1 -0.3633 -1.0236 -0.0917 27 1 -0.3632 0.5912 -0.8406 28 1 1.9311 3.1270 1.1474 29 1 0.3932 2.2335 1.0792 30 1 2.2298 0.6014 2.4247 31 1 1.1418 2.8700 6.0705 32 1 1.3705 0.3809 7.3851 33 1 2.9708 1.1601 7.3772 34 1 1.9934 3.1765 8.4399 35 1 0.3933 2.3966 8.4475 36 1 0.7312 3.7699 11.8480 37 1 0.7880 1.7440 -1.7703 38 1 1.8361 3.1056 -1.2447 39 1 3.1701 2.1438 -3.0159 40 1 2.6609 0.4778 -2.6064 41 1 3.9478 2.0331 0.6554 42 1 3.8563 0.2618 0.4649 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347235321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:11 Heat of formation + Delta-G solvation = -163.542963 kcal Electronic energy + Delta-G solvation = -24360.075926 eV Core-core repulsion = 20533.490197 eV Total energy + Delta-G solvation = -3826.585730 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.01598 -40.13959 -38.31643 -37.53209 -35.47568 -34.64863 -32.87514 -32.00629 -30.05024 -29.81457 -27.73547 -26.48107 -25.26857 -23.54069 -22.69879 -21.04467 -21.00723 -20.17919 -18.55988 -17.85443 -16.88521 -16.58332 -16.34664 -16.05629 -15.97003 -15.55140 -15.32131 -15.12282 -14.78244 -14.60633 -14.41089 -14.20432 -13.49400 -13.43964 -13.27397 -12.81852 -12.62655 -12.44663 -12.33435 -12.04674 -11.73842 -11.56532 -11.25561 -11.14252 -11.07366 -10.67872 -10.41596 -10.23137 -9.98443 -9.81928 -9.50335 -9.47424 -9.22619 -8.72192 -8.43272 -6.11477 -4.15219 1.54538 2.36908 3.07735 3.28305 3.34605 3.34768 3.37176 3.38287 3.69474 3.88091 4.00924 4.27191 4.39074 4.57426 4.66864 4.72116 4.77751 4.90940 5.03105 5.10170 5.14237 5.18520 5.25459 5.27596 5.33550 5.38800 5.47704 5.93800 6.15881 6.21977 6.44762 6.56780 6.61356 6.66985 6.95580 7.43808 7.55961 7.60724 7.85636 7.86372 8.18691 8.31138 8.90432 9.49817 11.00001 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.037713 B = 0.002325 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.270524 B =12037.719761 C =12102.505973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.363 6.363 3 C 0.069 3.931 4 C 0.101 3.899 5 N -0.703 5.703 6 C 0.509 3.491 7 O -0.519 6.519 8 C 0.497 3.503 9 O -0.531 6.531 10 N -0.685 5.685 11 C 0.118 3.882 12 C 0.011 3.989 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.898 3.102 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.177 4.177 22 C 0.058 3.942 23 O -0.378 6.378 24 C 0.065 3.935 25 H 0.049 0.951 26 H 0.092 0.908 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.417 0.583 31 H 0.410 0.590 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.263 0.737 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 -2.537 -27.136 27.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.282 6.282 3 C 0.028 3.972 4 C -0.023 4.023 5 N -0.358 5.358 6 C 0.290 3.710 7 O -0.394 6.394 8 C 0.276 3.724 9 O -0.408 6.408 10 N -0.336 5.336 11 C -0.003 4.003 12 C -0.027 4.027 13 C -0.562 4.562 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.726 3.274 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.215 4.215 22 C -0.019 4.019 23 O -0.297 6.297 24 C -0.011 4.011 25 H 0.068 0.932 26 H 0.110 0.890 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.255 0.745 31 H 0.246 0.754 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.129 -2.559 -27.032 27.153 hybrid contribution -0.411 -0.115 0.980 1.069 sum -0.540 -2.674 -26.052 26.194 Atomic orbital electron populations 1.22906 0.80505 1.03398 1.00635 1.88034 1.20335 1.25110 1.94715 1.23328 0.95140 0.84618 0.94088 1.21912 1.01735 0.96797 0.81861 1.45627 1.62181 1.23658 1.04343 1.20520 0.79259 0.85703 0.85504 1.90764 1.41017 1.20015 1.87653 1.19900 0.81161 0.86170 0.85125 1.90745 1.42513 1.20138 1.87441 1.46234 1.58737 1.22920 1.05738 1.21949 1.00346 0.97166 0.80841 1.19358 0.97488 0.95009 0.90794 1.21010 1.40524 1.04438 0.90233 0.92146 1.25004 0.94907 0.94928 0.99455 1.69957 1.41712 1.14668 1.26757 0.86490 0.78201 0.79861 0.82873 1.20528 1.21156 1.19719 1.23881 1.00980 1.01722 0.94937 1.23426 0.85073 1.00657 0.92715 1.88434 1.30510 1.95039 1.15706 1.23177 0.89319 1.03508 0.85122 0.93239 0.88953 0.93516 0.89194 0.90204 0.74546 0.75398 0.91831 0.91799 0.95658 0.95675 0.92761 0.88833 0.88718 0.89318 0.91580 0.89262 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.21 101.05 1.03 1.17 16 2 O -0.36 -3.10 10.16 -35.23 -0.36 -3.46 16 3 C 0.07 0.52 0.49 -88.67 -0.04 0.48 16 4 C 0.10 0.87 3.98 -4.04 -0.02 0.85 16 5 N -0.70 -7.78 5.26 -60.72 -0.32 -8.10 16 6 C 0.51 7.32 7.89 -11.58 -0.09 7.23 16 7 O -0.52 -8.37 16.48 5.49 0.09 -8.28 16 8 C 0.50 8.40 7.89 -11.59 -0.09 8.31 16 9 O -0.53 -9.93 16.48 5.50 0.09 -9.83 16 10 N -0.69 -12.29 5.55 -60.73 -0.34 -12.63 16 11 C 0.12 2.45 5.61 -4.04 -0.02 2.43 16 12 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 13 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 17 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 C -0.18 -1.00 6.22 -24.18 -0.15 -1.15 16 22 C 0.06 0.38 7.79 38.48 0.30 0.68 16 23 O -0.38 -3.65 11.36 -35.23 -0.40 -4.05 16 24 C 0.07 0.56 6.79 37.88 0.26 0.82 16 25 H 0.05 0.36 6.75 -51.93 -0.35 0.01 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.22 6.41 -51.93 -0.33 -0.11 16 28 H 0.09 0.76 8.12 -51.93 -0.42 0.33 16 29 H 0.08 0.66 6.73 -51.93 -0.35 0.31 16 30 H 0.42 4.54 7.63 -40.82 -0.31 4.23 16 31 H 0.41 7.00 7.94 -40.82 -0.32 6.68 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.09 0.41 6.41 -51.93 -0.33 0.08 16 38 H 0.09 0.45 8.04 -51.93 -0.42 0.03 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.72 7.81 -51.93 -0.41 0.32 16 42 H 0.09 0.77 8.07 -51.93 -0.42 0.35 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -32.11 352.92 -5.74 -37.86 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.17 Total: 4.42 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 0.62 Total: 7.86 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.08 Total: -46.01 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.58 Total: -25.62 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.11 -5.74 -37.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347235321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.686 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds