Wall clock time and date at job start Tue Mar 31 2020 04:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00248 * 2 1 4 4 C 1.52997 * 110.74976 * 54.68652 * 3 2 1 5 5 N 1.46505 * 109.47102 * 60.02601 * 4 3 2 6 6 C 1.34780 * 120.00054 * 175.16483 * 5 4 3 7 7 O 1.21355 * 119.99810 * 0.02562 * 6 5 4 8 8 C 1.49448 * 119.99923 * 179.97438 * 6 5 4 9 9 O 1.21347 * 119.99897 * 0.02562 * 8 6 5 10 10 N 1.34772 * 119.99736 * 179.97438 * 8 6 5 11 11 C 1.46505 * 119.99867 * 180.02562 * 10 8 6 12 12 C 1.53003 * 109.47205 * 180.02562 * 11 10 8 13 13 C 1.50702 * 109.47002 * 179.97438 * 12 11 10 14 14 H 1.07992 * 119.99871 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99849 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00179 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00145 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47219 * 89.99891 * 17 15 13 19 19 H 1.48500 * 109.47137 * 210.00153 * 17 15 13 20 20 H 1.48499 * 109.46973 * 329.99836 * 17 15 13 21 21 C 1.55308 * 110.84673 * 291.21624 * 3 2 1 22 22 C 1.55497 * 100.69416 * 275.83671 * 21 3 2 23 23 O 1.43648 * 105.17873 * 323.57755 * 22 21 3 24 24 C 1.43232 * 109.97442 * 24.43844 * 23 22 21 25 25 H 1.08998 * 109.47044 * 294.88692 * 1 2 3 26 26 H 1.08998 * 109.46910 * 174.88259 * 1 2 3 27 27 H 1.09001 * 109.46643 * 54.87890 * 1 2 3 28 28 H 1.09006 * 109.47217 * 180.02562 * 4 3 2 29 29 H 1.08998 * 109.47748 * 300.02602 * 4 3 2 30 30 H 0.96996 * 120.00008 * 355.16547 * 5 4 3 31 31 H 0.96996 * 120.00685 * 0.02562 * 10 8 6 32 32 H 1.09001 * 109.46967 * 300.00168 * 11 10 8 33 33 H 1.09001 * 109.47408 * 60.00340 * 11 10 8 34 34 H 1.09001 * 109.47061 * 299.99823 * 12 11 10 35 35 H 1.09001 * 109.46895 * 59.99739 * 12 11 10 36 36 H 0.96998 * 120.00384 * 180.02562 * 16 15 13 37 37 H 1.08998 * 111.12119 * 33.86133 * 21 3 2 38 38 H 1.09003 * 111.12190 * 158.02330 * 21 3 2 39 39 H 1.09003 * 110.28070 * 204.65426 * 22 21 3 40 40 H 1.08999 * 110.29640 * 82.51189 * 22 21 3 41 41 H 1.09002 * 109.83369 * 238.77715 * 24 23 22 42 42 H 1.09001 * 109.91106 * 117.83543 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.4753 2.1371 1.1675 5 7 1.8048 1.4733 2.4313 6 6 1.5175 2.0742 3.6030 7 8 0.9854 3.1648 3.6112 8 6 1.8532 1.3968 4.8922 9 8 2.3848 0.3060 4.8840 10 7 1.5664 1.9979 6.0638 11 6 1.8959 1.3341 7.3276 12 6 1.4683 2.2230 8.4972 13 6 1.8067 1.5399 9.7972 14 1 2.2791 0.5688 9.7899 15 6 1.5132 2.1548 10.9958 16 7 0.9374 3.3372 11.0048 17 14 1.9333 1.3084 12.6072 18 1 3.3033 1.6971 13.0280 19 1 0.9597 1.7192 13.6506 20 1 1.8707 -0.1639 12.4241 21 6 1.7553 2.0240 -1.3530 22 6 2.9250 1.4566 -2.2061 23 8 4.0318 1.3417 -1.2975 24 6 3.5511 1.2209 0.0463 25 1 -0.3633 0.4325 0.9322 26 1 -0.3633 -1.0236 -0.0917 27 1 -0.3632 0.5912 -0.8406 28 1 1.9311 3.1270 1.1474 29 1 0.3932 2.2335 1.0792 30 1 2.2298 0.6014 2.4247 31 1 1.1418 2.8700 6.0705 32 1 1.3705 0.3809 7.3851 33 1 2.9708 1.1601 7.3772 34 1 1.9934 3.1765 8.4399 35 1 0.3933 2.3966 8.4475 36 1 0.7312 3.7699 11.8480 37 1 0.7880 1.7440 -1.7703 38 1 1.8361 3.1056 -1.2447 39 1 3.1701 2.1438 -3.0159 40 1 2.6609 0.4778 -2.6064 41 1 3.9478 2.0331 0.6554 42 1 3.8563 0.2618 0.4649 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347235321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:11 Heat of formation + Delta-G solvation = -189.621168 kcal Electronic energy + Delta-G solvation = -24361.206762 eV Core-core repulsion = 20533.490197 eV Total energy + Delta-G solvation = -3827.716566 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.94042 -41.12049 -39.58937 -38.18808 -36.92955 -35.83995 -34.80166 -32.66439 -31.70452 -30.62859 -28.50967 -27.44339 -26.69990 -24.81007 -23.46382 -22.76574 -21.71255 -21.36331 -19.74247 -18.59245 -18.51688 -17.85126 -17.29802 -17.18695 -16.78523 -16.50173 -16.37423 -16.32682 -16.00886 -15.77173 -15.58557 -15.15452 -14.82064 -14.60553 -14.31207 -13.97497 -13.78382 -13.27382 -13.24807 -12.98866 -12.95014 -12.83992 -12.58399 -12.53290 -12.28844 -12.21338 -11.73335 -11.69203 -11.44654 -10.90012 -10.64124 -10.61999 -10.60454 -10.45255 -10.21426 -8.23902 -6.35037 0.27737 1.22791 1.43451 1.43596 1.55159 2.07898 2.36381 2.45094 2.69645 2.78283 3.11126 3.20095 3.36696 3.42605 3.67345 4.07892 4.21981 4.33428 4.35009 4.37709 4.38229 4.44575 4.49370 4.56273 4.64408 4.80337 4.80716 4.82171 4.90755 4.97266 5.00241 5.06485 5.41748 5.54478 5.74346 5.84689 5.87859 6.05894 6.12529 6.30191 6.64296 6.78667 6.89362 7.34571 8.88107 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.037713 B = 0.002325 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.270524 B =12037.719761 C =12102.505973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.380 6.380 3 C 0.073 3.927 4 C 0.099 3.901 5 N -0.686 5.686 6 C 0.518 3.482 7 O -0.537 6.537 8 C 0.499 3.501 9 O -0.548 6.548 10 N -0.687 5.687 11 C 0.138 3.862 12 C 0.019 3.981 13 C -0.545 4.545 14 H 0.064 0.936 15 C 0.005 3.995 16 N -0.928 5.928 17 Si 0.967 3.033 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.264 1.264 21 C -0.168 4.168 22 C 0.050 3.950 23 O -0.401 6.401 24 C 0.061 3.939 25 H 0.040 0.960 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.420 0.580 31 H 0.415 0.585 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.266 0.734 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 -2.926 -28.274 28.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.300 6.300 3 C 0.033 3.967 4 C -0.024 4.024 5 N -0.339 5.339 6 C 0.298 3.702 7 O -0.414 6.414 8 C 0.280 3.720 9 O -0.427 6.427 10 N -0.339 5.339 11 C 0.015 3.985 12 C -0.019 4.019 13 C -0.583 4.583 14 H 0.083 0.917 15 C -0.194 4.194 16 N -0.568 5.568 17 Si 0.792 3.208 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.188 1.188 21 C -0.206 4.206 22 C -0.025 4.025 23 O -0.320 6.320 24 C -0.015 4.015 25 H 0.059 0.941 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.257 0.743 31 H 0.251 0.749 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.288 -2.964 -28.222 28.379 hybrid contribution -0.355 -0.018 1.229 1.279 sum -0.643 -2.983 -26.994 27.166 Atomic orbital electron populations 1.23036 0.79503 1.04287 1.01043 1.88021 1.21476 1.25622 1.94832 1.23276 0.94308 0.84475 0.94647 1.22143 1.02499 0.97065 0.80645 1.45609 1.60600 1.23428 1.04309 1.19914 0.79625 0.85368 0.85273 1.90768 1.42317 1.20634 1.87693 1.20318 0.80198 0.85832 0.85698 1.90734 1.43137 1.20970 1.87849 1.46059 1.59262 1.23144 1.05400 1.21485 0.99950 0.96184 0.80891 1.19176 0.96093 0.94773 0.91832 1.21450 1.40459 1.04827 0.91571 0.91730 1.25915 0.94694 0.95561 1.03235 1.70073 1.42760 1.16121 1.27808 0.85406 0.78099 0.79047 0.78261 1.19785 1.20747 1.18792 1.23895 1.01360 1.02191 0.93145 1.23623 0.84804 1.01256 0.92851 1.88410 1.32161 1.95133 1.16341 1.23193 0.90241 1.03093 0.85001 0.94089 0.88284 0.91477 0.88487 0.89213 0.74281 0.74876 0.92037 0.92005 0.97372 0.97366 0.92560 0.87121 0.87435 0.87614 0.91683 0.89075 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.21 113.37 1.16 1.34 16 2 O -0.38 -5.88 10.16 -148.98 -1.51 -7.40 16 3 C 0.07 0.98 0.49 -9.53 0.00 0.97 16 4 C 0.10 1.52 3.98 86.38 0.34 1.86 16 5 N -0.69 -14.32 5.26 -464.39 -2.44 -16.77 16 6 C 0.52 14.39 7.89 87.27 0.69 15.08 16 7 O -0.54 -16.75 16.48 -3.26 -0.05 -16.80 16 8 C 0.50 16.62 7.89 87.27 0.69 17.31 16 9 O -0.55 -20.23 16.48 -3.24 -0.05 -20.28 16 10 N -0.69 -24.68 5.55 -464.40 -2.58 -27.25 16 11 C 0.14 5.73 5.61 86.38 0.48 6.21 16 12 C 0.02 0.94 5.09 29.85 0.15 1.09 16 13 C -0.54 -29.97 9.11 25.60 0.23 -29.74 16 14 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 15 C 0.00 0.26 5.46 84.65 0.46 0.72 16 16 N -0.93 -54.65 13.29 21.45 0.28 -54.36 16 17 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 21 C -0.17 -1.44 6.22 32.25 0.20 -1.24 16 22 C 0.05 0.58 7.79 72.84 0.57 1.15 16 23 O -0.40 -7.35 11.36 -148.98 -1.69 -9.04 16 24 C 0.06 1.00 6.79 72.45 0.49 1.49 16 25 H 0.04 0.52 6.75 -2.39 -0.02 0.50 16 26 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 0.45 6.41 -2.39 -0.02 0.44 16 28 H 0.10 1.42 8.12 -2.38 -0.02 1.40 16 29 H 0.09 1.27 6.73 -2.39 -0.02 1.25 16 30 H 0.42 8.70 7.63 -92.71 -0.71 7.99 16 31 H 0.41 14.26 7.94 -92.71 -0.74 13.52 16 32 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.01 0.42 8.14 -2.39 -0.02 0.41 16 36 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 37 H 0.11 0.59 6.41 -2.39 -0.02 0.57 16 38 H 0.11 0.68 8.04 -2.39 -0.02 0.66 16 39 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.09 1.40 7.81 -2.39 -0.02 1.38 16 42 H 0.08 1.35 8.07 -2.39 -0.02 1.33 16 Total: -1.00 -67.98 352.92 -0.95 -68.92 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -0.39 Total: 21.42 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 5.47 Total: 16.26 kcal Atomic # 7 Polarization: -93.65 SS G_CDS: -4.73 Total: -98.38 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -3.31 Total: -53.52 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -67.98 -0.95 -68.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347235321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.699 kcal (2) G-P(sol) polarization free energy of solvation -67.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds