Wall clock time and date at job start Tue Mar 31 2020 04:11:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34235 * 116.99550 * 2 1
4 4 O 1.20821 * 120.00138 * 359.97438 * 3 2 1
5 5 C 1.50707 * 119.99974 * 180.02562 * 3 2 1
6 6 N 1.46497 * 110.45445 * 325.70110 * 5 3 2
7 7 C 1.34781 * 120.00245 * 57.39256 * 6 5 3
8 8 O 1.21275 * 119.99676 * 0.02562 * 7 6 5
9 9 C 1.50703 * 119.99971 * 179.97438 * 7 6 5
10 10 H 1.09002 * 109.47083 * 320.00492 * 9 7 6
11 11 N 1.46898 * 109.47113 * 200.00293 * 9 7 6
12 12 C 1.53000 * 109.46801 * 80.00207 * 9 7 6
13 13 C 1.52997 * 109.47060 * 184.99876 * 12 9 7
14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 9
15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12
16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12
17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13
18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13
19 19 H 1.48503 * 109.46756 * 59.99920 * 18 16 14
20 20 H 1.48490 * 109.47381 * 179.97438 * 18 16 14
21 21 H 1.48496 * 109.47117 * 300.00527 * 18 16 14
22 22 C 1.54507 * 110.50837 * 203.09520 * 5 3 2
23 23 C 1.54482 * 104.05986 * 241.21613 * 22 5 3
24 24 O 1.44419 * 104.80328 * 336.02256 * 23 22 5
25 25 C 1.44419 * 105.27637 * 40.51448 * 24 23 22
26 26 H 1.09004 * 109.46896 * 299.99460 * 1 2 3
27 27 H 1.08993 * 109.47223 * 60.00218 * 1 2 3
28 28 H 1.09000 * 109.46430 * 180.02562 * 1 2 3
29 29 H 0.97000 * 120.00041 * 237.39419 * 6 5 3
30 30 H 1.00899 * 111.00057 * 300.00501 * 11 9 7
31 31 H 1.00902 * 110.99515 * 63.95638 * 11 9 7
32 32 H 1.09002 * 109.47398 * 305.00045 * 12 9 7
33 33 H 1.09001 * 109.47194 * 65.00225 * 12 9 7
34 34 H 1.09002 * 109.47153 * 300.00319 * 13 12 9
35 35 H 1.08998 * 109.47533 * 59.99948 * 13 12 9
36 36 H 0.97002 * 119.99731 * 180.02562 * 17 16 14
37 37 H 1.08994 * 110.51377 * 359.86116 * 22 5 3
38 38 H 1.08998 * 110.50807 * 122.43888 * 22 5 3
39 39 H 1.09000 * 110.37055 * 94.85688 * 23 22 5
40 40 H 1.09001 * 110.36694 * 217.19487 * 23 22 5
41 41 H 1.09002 * 110.37755 * 200.65788 * 25 24 23
42 42 H 1.08995 * 110.37868 * 78.31764 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1961 0.0000
4 8 1.4032 2.2093 -0.0005
5 6 3.5663 1.2751 -0.0006
6 7 4.1373 0.1694 0.7724
7 6 3.8498 -1.1047 0.4397
8 8 3.1187 -1.3357 -0.4999
9 6 4.4376 -2.2421 1.2346
10 1 5.4730 -2.0124 1.4864
11 7 4.3896 -3.4739 0.4358
12 6 3.6311 -2.4360 2.5203
13 6 4.3003 -3.5058 3.3855
14 6 3.5056 -3.6974 4.6515
15 1 2.6124 -3.1147 4.8218
16 6 3.9183 -4.6173 5.5920
17 7 5.0058 -5.3272 5.3844
18 14 2.9337 -4.8543 7.1617
19 1 1.5540 -5.2845 6.8203
20 1 3.5823 -5.8935 8.0008
21 1 2.8814 -3.5735 7.9113
22 6 4.0374 2.6327 0.5672
23 6 4.8113 3.2804 -0.6024
24 8 5.2346 2.1708 -1.4242
25 6 4.1114 1.2632 -1.4460
26 1 -0.3633 0.5138 0.8901
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3632 -1.0277 0.0005
29 1 4.7223 0.3542 1.5238
30 1 3.4396 -3.7084 0.1895
31 1 4.9674 -3.3937 -0.3875
32 1 3.5924 -1.4958 3.0703
33 1 2.6186 -2.7524 2.2698
34 1 4.3390 -4.4461 2.8355
35 1 5.3128 -3.1896 3.6361
36 1 5.2959 -5.9747 6.0459
37 1 3.1817 3.2476 0.8460
38 1 4.6932 2.4812 1.4245
39 1 4.1578 3.9442 -1.1684
40 1 5.6768 3.8271 -0.2280
41 1 4.4390 0.2603 -1.7196
42 1 3.3505 1.6176 -2.1413
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001348859983.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:11:58
Heat of formation + Delta-G solvation = -162.799714 kcal
Electronic energy + Delta-G solvation = -25850.620973 eV
Core-core repulsion = 22024.067472 eV
Total energy + Delta-G solvation = -3826.553500 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 300.156 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-41.48987 -39.63193 -39.00291 -36.54706 -35.35204 -34.76545 -32.81112 -31.33419
-30.11180 -29.57000 -27.72029 -26.36276 -24.32987 -23.42516 -23.14889 -20.92290
-20.15533 -19.78797 -18.33894 -17.55879 -16.92757 -16.84551 -16.40377 -16.18270
-15.79264 -15.47746 -15.39173 -14.69997 -14.49092 -14.25901 -13.74551 -13.46783
-13.39946 -13.21813 -12.95965 -12.33801 -12.30951 -12.13074 -12.03465 -11.98259
-11.58690 -11.54610 -10.89450 -10.85797 -10.82036 -10.64555 -10.57459 -10.28699
-10.09029 -9.80841 -9.37845 -9.25705 -9.02082 -8.37047 -8.22223 -5.94936
-3.97187 1.85506 2.46826 2.76992 2.97715 3.34710 3.39644 3.41727
3.56477 3.79947 4.30353 4.48658 4.54877 4.61403 4.71474 4.84115
4.97415 5.05463 5.13256 5.16785 5.28727 5.35756 5.38234 5.40561
5.46161 5.49941 5.51932 5.81623 6.12869 6.25135 6.31025 6.41799
6.64157 7.06736 7.28637 7.49790 7.55204 7.74532 7.78204 7.94856
8.11877 8.23568 8.47078 9.10626 9.65972 11.15881
Molecular weight = 300.16amu
Principal moments of inertia in cm(-1)
A = 0.018594 B = 0.003752 C = 0.003603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1505.481289 B = 7460.782216 C = 7769.559812
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.308 6.308
3 C 0.465 3.535
4 O -0.511 6.511
5 C 0.152 3.848
6 N -0.718 5.718
7 C 0.481 3.519
8 O -0.516 6.516
9 C 0.082 3.918
10 H 0.098 0.902
11 N -0.806 5.806
12 C -0.093 4.093
13 C 0.031 3.969
14 C -0.523 4.523
15 H 0.051 0.949
16 C 0.059 3.941
17 N -0.892 5.892
18 Si 0.888 3.112
19 H -0.278 1.278
20 H -0.287 1.287
21 H -0.278 1.278
22 C -0.153 4.153
23 C 0.046 3.954
24 O -0.362 6.362
25 C 0.057 3.943
26 H 0.059 0.941
27 H 0.059 0.941
28 H 0.102 0.898
29 H 0.410 0.590
30 H 0.348 0.652
31 H 0.334 0.666
32 H 0.051 0.949
33 H 0.053 0.947
34 H 0.035 0.965
35 H 0.013 0.987
36 H 0.260 0.740
37 H 0.107 0.893
38 H 0.097 0.903
39 H 0.068 0.932
40 H 0.103 0.897
41 H 0.113 0.887
42 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.919 15.925 -12.877 20.569
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.221 6.221
3 C 0.307 3.693
4 O -0.400 6.400
5 C 0.063 3.937
6 N -0.375 5.375
7 C 0.267 3.733
8 O -0.390 6.390
9 C -0.034 4.034
10 H 0.116 0.884
11 N -0.333 5.333
12 C -0.132 4.132
13 C -0.006 4.006
14 C -0.562 4.562
15 H 0.069 0.931
16 C -0.142 4.142
17 N -0.531 5.531
18 Si 0.717 3.283
19 H -0.203 1.203
20 H -0.213 1.213
21 H -0.204 1.204
22 C -0.190 4.190
23 C -0.031 4.031
24 O -0.281 6.281
25 C -0.021 4.021
26 H 0.078 0.922
27 H 0.078 0.922
28 H 0.121 0.879
29 H 0.247 0.753
30 H 0.162 0.838
31 H 0.146 0.854
32 H 0.070 0.930
33 H 0.072 0.928
34 H 0.053 0.947
35 H 0.031 0.969
36 H 0.070 0.930
37 H 0.126 0.874
38 H 0.116 0.884
39 H 0.086 0.914
40 H 0.121 0.879
41 H 0.131 0.869
42 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -2.059 15.449 -12.945 20.260
hybrid contribution -1.184 0.716 0.715 1.557
sum -3.243 16.164 -12.230 20.527
Atomic orbital electron populations
1.23321 0.77318 1.03944 1.01863 1.86996 1.22377 1.30781 1.81983
1.23650 0.91259 0.82258 0.72170 1.90646 1.66489 1.36682 1.46160
1.21419 0.86815 0.89856 0.95658 1.46325 1.51866 1.04631 1.34675
1.22901 0.80624 0.84405 0.85348 1.90680 1.35031 1.84021 1.29278
1.21824 1.01225 0.85338 0.94968 0.88385 1.58995 1.16785 1.31435
1.26122 1.21640 0.98523 1.01221 0.91799 1.19013 0.94969 0.93720
0.92880 1.21231 1.10239 1.21209 1.03473 0.93117 1.24981 0.95108
0.95906 0.98248 1.69964 1.23203 1.24597 1.35376 0.86723 0.80345
0.77741 0.83539 1.20347 1.21315 1.20398 1.23309 1.02617 0.92961
1.00153 1.23481 0.99428 0.89972 0.90211 1.89206 1.35982 1.32035
1.70842 1.23657 0.89553 0.96440 0.92485 0.92177 0.92245 0.87917
0.75308 0.83752 0.85411 0.93025 0.92788 0.94652 0.96893 0.93033
0.87443 0.88408 0.91377 0.87926 0.86851 0.91134
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.35 10.56 101.05 1.07 1.41 16
2 O -0.31 -4.54 6.59 -47.47 -0.31 -4.86 16
3 C 0.47 6.45 6.69 36.01 0.24 6.70 16
4 O -0.51 -7.57 15.33 -18.75 -0.29 -7.86 16
5 C 0.15 1.76 0.99 -131.40 -0.13 1.63 16
6 N -0.72 -8.46 5.15 -47.22 -0.24 -8.71 16
7 C 0.48 6.86 5.85 -10.98 -0.06 6.80 16
8 O -0.52 -8.21 12.10 -19.23 -0.23 -8.44 16
9 C 0.08 1.29 3.15 -68.86 -0.22 1.07 16
10 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16
11 N -0.81 -12.72 8.44 -5.65 -0.05 -12.77 16
12 C -0.09 -1.81 4.78 -26.73 -0.13 -1.94 16
13 C 0.03 0.78 4.86 -27.89 -0.14 0.64 16
14 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16
15 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16
16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
17 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16
18 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16
19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
22 C -0.15 -1.34 6.40 -25.16 -0.16 -1.50 16
23 C 0.05 0.37 7.63 37.94 0.29 0.66 16
24 O -0.36 -4.00 11.65 -35.23 -0.41 -4.41 16
25 C 0.06 0.65 6.49 37.93 0.25 0.90 16
26 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16
27 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16
28 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16
29 H 0.41 4.03 8.14 -40.82 -0.33 3.69 16
30 H 0.35 5.57 8.58 -39.29 -0.34 5.24 16
31 H 0.33 4.53 9.06 -39.29 -0.36 4.18 16
32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16
33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16
34 H 0.04 0.96 7.75 -51.93 -0.40 0.55 16
35 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16
36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
37 H 0.11 0.99 6.77 -51.93 -0.35 0.64 16
38 H 0.10 0.68 7.53 -51.93 -0.39 0.29 16
39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16
41 H 0.11 1.41 6.81 -51.93 -0.35 1.05 16
42 H 0.07 0.78 7.86 -51.93 -0.41 0.37 16
LS Contribution 347.20 15.07 5.23 5.23
Total: -1.00 -33.25 347.20 -6.27 -39.52
By element:
Atomic # 1 Polarization: 14.85 SS G_CDS: -6.28 Total: 8.57 kcal
Atomic # 6 Polarization: 2.49 SS G_CDS: 0.60 Total: 3.09 kcal
Atomic # 7 Polarization: -47.78 SS G_CDS: 0.45 Total: -47.34 kcal
Atomic # 8 Polarization: -24.33 SS G_CDS: -1.24 Total: -25.57 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -33.25 -6.27 -39.52 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001348859983.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -123.281 kcal
(2) G-P(sol) polarization free energy of solvation -33.250 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.531 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal
(6) G-S(sol) free energy of system = (1) + (5) -162.800 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds