Wall clock time and date at job start Tue Mar 31 2020 04:11:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34235 * 116.99550 * 2 1
4 4 O 1.20821 * 120.00138 * 359.97438 * 3 2 1
5 5 C 1.50707 * 119.99974 * 180.02562 * 3 2 1
6 6 N 1.46497 * 110.45445 * 325.70110 * 5 3 2
7 7 C 1.34781 * 120.00245 * 57.39256 * 6 5 3
8 8 O 1.21275 * 119.99676 * 0.02562 * 7 6 5
9 9 C 1.50703 * 119.99971 * 179.97438 * 7 6 5
10 10 H 1.09002 * 109.47083 * 320.00492 * 9 7 6
11 11 N 1.46898 * 109.47113 * 200.00293 * 9 7 6
12 12 C 1.53000 * 109.46801 * 80.00207 * 9 7 6
13 13 C 1.52997 * 109.47060 * 184.99876 * 12 9 7
14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 9
15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12
16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12
17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13
18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13
19 19 H 1.48503 * 109.46756 * 59.99920 * 18 16 14
20 20 H 1.48490 * 109.47381 * 179.97438 * 18 16 14
21 21 H 1.48496 * 109.47117 * 300.00527 * 18 16 14
22 22 C 1.54507 * 110.50837 * 203.09520 * 5 3 2
23 23 C 1.54482 * 104.05986 * 241.21613 * 22 5 3
24 24 O 1.44419 * 104.80328 * 336.02256 * 23 22 5
25 25 C 1.44419 * 105.27637 * 40.51448 * 24 23 22
26 26 H 1.09004 * 109.46896 * 299.99460 * 1 2 3
27 27 H 1.08993 * 109.47223 * 60.00218 * 1 2 3
28 28 H 1.09000 * 109.46430 * 180.02562 * 1 2 3
29 29 H 0.97000 * 120.00041 * 237.39419 * 6 5 3
30 30 H 1.00899 * 111.00057 * 300.00501 * 11 9 7
31 31 H 1.00902 * 110.99515 * 63.95638 * 11 9 7
32 32 H 1.09002 * 109.47398 * 305.00045 * 12 9 7
33 33 H 1.09001 * 109.47194 * 65.00225 * 12 9 7
34 34 H 1.09002 * 109.47153 * 300.00319 * 13 12 9
35 35 H 1.08998 * 109.47533 * 59.99948 * 13 12 9
36 36 H 0.97002 * 119.99731 * 180.02562 * 17 16 14
37 37 H 1.08994 * 110.51377 * 359.86116 * 22 5 3
38 38 H 1.08998 * 110.50807 * 122.43888 * 22 5 3
39 39 H 1.09000 * 110.37055 * 94.85688 * 23 22 5
40 40 H 1.09001 * 110.36694 * 217.19487 * 23 22 5
41 41 H 1.09002 * 110.37755 * 200.65788 * 25 24 23
42 42 H 1.08995 * 110.37868 * 78.31764 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1961 0.0000
4 8 1.4032 2.2093 -0.0005
5 6 3.5663 1.2751 -0.0006
6 7 4.1373 0.1694 0.7724
7 6 3.8498 -1.1047 0.4397
8 8 3.1187 -1.3357 -0.4999
9 6 4.4376 -2.2421 1.2346
10 1 5.4730 -2.0124 1.4864
11 7 4.3896 -3.4739 0.4358
12 6 3.6311 -2.4360 2.5203
13 6 4.3003 -3.5058 3.3855
14 6 3.5056 -3.6974 4.6515
15 1 2.6124 -3.1147 4.8218
16 6 3.9183 -4.6173 5.5920
17 7 5.0058 -5.3272 5.3844
18 14 2.9337 -4.8543 7.1617
19 1 1.5540 -5.2845 6.8203
20 1 3.5823 -5.8935 8.0008
21 1 2.8814 -3.5735 7.9113
22 6 4.0374 2.6327 0.5672
23 6 4.8113 3.2804 -0.6024
24 8 5.2346 2.1708 -1.4242
25 6 4.1114 1.2632 -1.4460
26 1 -0.3633 0.5138 0.8901
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3632 -1.0277 0.0005
29 1 4.7223 0.3542 1.5238
30 1 3.4396 -3.7084 0.1895
31 1 4.9674 -3.3937 -0.3875
32 1 3.5924 -1.4958 3.0703
33 1 2.6186 -2.7524 2.2698
34 1 4.3390 -4.4461 2.8355
35 1 5.3128 -3.1896 3.6361
36 1 5.2959 -5.9747 6.0459
37 1 3.1817 3.2476 0.8460
38 1 4.6932 2.4812 1.4245
39 1 4.1578 3.9442 -1.1684
40 1 5.6768 3.8271 -0.2280
41 1 4.4390 0.2603 -1.7196
42 1 3.3505 1.6176 -2.1413
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001348859983.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:11:57
Heat of formation + Delta-G solvation = -188.132163 kcal
Electronic energy + Delta-G solvation = -25851.719470 eV
Core-core repulsion = 22024.067472 eV
Total energy + Delta-G solvation = -3827.651998 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 300.156 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-42.47423 -40.73409 -39.94978 -37.60908 -36.78691 -35.83336 -34.77114 -32.20048
-31.86754 -30.44143 -28.65622 -28.00759 -25.68748 -24.67858 -23.97308 -22.43475
-21.32591 -20.96929 -19.34177 -18.75404 -18.22699 -17.91859 -17.82014 -17.28540
-16.91242 -16.60828 -16.44651 -16.26627 -15.73335 -15.53405 -14.91769 -14.73022
-14.38410 -14.24398 -14.11966 -13.82171 -13.72750 -13.37055 -13.18549 -12.96882
-12.84714 -12.76367 -12.50145 -12.25011 -12.24299 -11.85870 -11.84716 -11.68083
-11.56159 -11.19724 -11.05707 -10.90550 -10.45933 -10.26992 -9.55687 -8.11532
-6.21373 0.81314 1.42915 1.45148 1.47023 1.52908 1.67542 1.97048
2.46094 2.79277 2.97797 3.21646 3.45815 3.62784 3.63311 3.84677
3.94743 4.06354 4.15728 4.18284 4.20169 4.23079 4.38217 4.48816
4.60741 4.69219 4.75935 4.79282 4.83004 4.99933 5.18713 5.24585
5.30095 5.54425 5.59934 5.88928 6.02573 6.14911 6.33494 6.40369
6.51156 6.59535 6.97677 7.14491 7.46596 8.99350
Molecular weight = 300.16amu
Principal moments of inertia in cm(-1)
A = 0.018594 B = 0.003752 C = 0.003603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1505.481289 B = 7460.782216 C = 7769.559812
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.328 6.328
3 C 0.461 3.539
4 O -0.525 6.525
5 C 0.150 3.850
6 N -0.707 5.707
7 C 0.489 3.511
8 O -0.531 6.531
9 C 0.090 3.910
10 H 0.110 0.890
11 N -0.818 5.818
12 C -0.079 4.079
13 C 0.039 3.961
14 C -0.543 4.543
15 H 0.054 0.946
16 C 0.003 3.997
17 N -0.929 5.929
18 Si 0.956 3.044
19 H -0.272 1.272
20 H -0.285 1.285
21 H -0.267 1.267
22 C -0.147 4.147
23 C 0.044 3.956
24 O -0.375 6.375
25 C 0.061 3.939
26 H 0.062 0.938
27 H 0.067 0.933
28 H 0.114 0.886
29 H 0.421 0.579
30 H 0.346 0.654
31 H 0.347 0.653
32 H 0.063 0.937
33 H 0.042 0.958
34 H 0.006 0.994
35 H -0.006 1.006
36 H 0.261 0.739
37 H 0.105 0.895
38 H 0.119 0.881
39 H 0.074 0.926
40 H 0.129 0.871
41 H 0.101 0.899
42 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.090 17.451 -12.435 21.529
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.242 6.242
3 C 0.303 3.697
4 O -0.415 6.415
5 C 0.060 3.940
6 N -0.364 5.364
7 C 0.274 3.726
8 O -0.406 6.406
9 C -0.026 4.026
10 H 0.127 0.873
11 N -0.347 5.347
12 C -0.117 4.117
13 C 0.002 3.998
14 C -0.581 4.581
15 H 0.072 0.928
16 C -0.194 4.194
17 N -0.569 5.569
18 Si 0.781 3.219
19 H -0.197 1.197
20 H -0.210 1.210
21 H -0.192 1.192
22 C -0.185 4.185
23 C -0.032 4.032
24 O -0.293 6.293
25 C -0.017 4.017
26 H 0.080 0.920
27 H 0.085 0.915
28 H 0.132 0.868
29 H 0.260 0.740
30 H 0.160 0.840
31 H 0.160 0.840
32 H 0.082 0.918
33 H 0.061 0.939
34 H 0.024 0.976
35 H 0.012 0.988
36 H 0.070 0.930
37 H 0.123 0.877
38 H 0.138 0.862
39 H 0.092 0.908
40 H 0.147 0.853
41 H 0.119 0.881
42 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -2.222 17.007 -12.503 21.225
hybrid contribution -1.138 0.257 0.544 1.287
sum -3.360 17.265 -11.959 21.269
Atomic orbital electron populations
1.23496 0.76179 1.04941 1.02364 1.86977 1.23781 1.31438 1.81982
1.24075 0.92126 0.81862 0.71651 1.90631 1.67022 1.36938 1.46870
1.21593 0.85440 0.90871 0.96068 1.46159 1.51459 1.03980 1.34769
1.22412 0.80348 0.84847 0.85011 1.90682 1.35623 1.84381 1.29964
1.21589 1.01220 0.86163 0.93604 0.87261 1.58966 1.16958 1.31817
1.26953 1.21348 0.97751 0.99742 0.92872 1.18830 0.94195 0.94097
0.92701 1.21703 1.10555 1.21192 1.04637 0.92752 1.25861 0.96132
0.95640 1.01810 1.70096 1.24875 1.25316 1.36649 0.85642 0.78830
0.78052 0.79344 1.19673 1.21010 1.19181 1.23372 1.02937 0.91078
1.01095 1.23707 1.00637 0.89260 0.89625 1.89198 1.35859 1.32767
1.71491 1.23525 0.89686 0.96130 0.92356 0.91970 0.91460 0.86767
0.73991 0.84005 0.83955 0.91803 0.93887 0.97568 0.98758 0.92979
0.87690 0.86240 0.90766 0.85280 0.88068 0.91133
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.54 10.56 113.37 1.20 1.74 16
2 O -0.33 -9.43 6.59 -43.62 -0.29 -9.71 16
3 C 0.46 12.28 6.69 71.24 0.48 12.75 16
4 O -0.53 -14.99 15.33 21.98 0.34 -14.66 16
5 C 0.15 3.22 0.99 3.88 0.00 3.22 16
6 N -0.71 -15.42 5.15 -421.69 -2.17 -17.60 16
7 C 0.49 13.39 5.85 87.66 0.51 13.90 16
8 O -0.53 -16.52 12.10 20.69 0.25 -16.27 16
9 C 0.09 2.75 3.15 44.17 0.14 2.89 16
10 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16
11 N -0.82 -25.71 8.44 -171.80 -1.45 -27.16 16
12 C -0.08 -3.02 4.78 30.59 0.15 -2.87 16
13 C 0.04 1.97 4.86 29.85 0.15 2.11 16
14 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16
15 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16
16 C 0.00 0.20 5.46 84.65 0.46 0.66 16
17 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16
18 Si 0.96 43.87 29.54 68.60 2.03 45.90 16
19 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16
20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16
21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16
22 C -0.15 -2.21 6.40 31.61 0.20 -2.01 16
23 C 0.04 0.59 7.63 72.49 0.55 1.15 16
24 O -0.37 -7.54 11.65 -148.98 -1.74 -9.27 16
25 C 0.06 1.33 6.49 72.48 0.47 1.80 16
26 H 0.06 1.36 8.13 -2.38 -0.02 1.34 16
27 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16
28 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16
29 H 0.42 7.26 8.14 -92.71 -0.75 6.51 16
30 H 0.35 11.12 8.58 -89.69 -0.77 10.35 16
31 H 0.35 9.25 9.06 -89.69 -0.81 8.43 16
32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16
33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16
34 H 0.01 0.33 7.75 -2.39 -0.02 0.31 16
35 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16
36 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16
37 H 0.10 1.69 6.77 -2.39 -0.02 1.68 16
38 H 0.12 1.26 7.53 -2.39 -0.02 1.25 16
39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16
40 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16
41 H 0.10 2.44 6.81 -2.39 -0.02 2.42 16
42 H 0.07 1.51 7.86 -2.39 -0.02 1.49 16
Total: -1.00 -71.08 347.20 0.52 -70.56
By element:
Atomic # 1 Polarization: 29.87 SS G_CDS: -1.27 Total: 28.60 kcal
Atomic # 6 Polarization: 0.79 SS G_CDS: 4.54 Total: 5.33 kcal
Atomic # 7 Polarization: -97.13 SS G_CDS: -3.34 Total: -100.47 kcal
Atomic # 8 Polarization: -48.47 SS G_CDS: -1.44 Total: -49.91 kcal
Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal
Total: -71.08 0.52 -70.56 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001348859983.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -117.577 kcal
(2) G-P(sol) polarization free energy of solvation -71.078 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.655 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.555 kcal
(6) G-S(sol) free energy of system = (1) + (5) -188.132 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds