Wall clock time and date at job start Tue Mar 31 2020 04:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00343 * 2 1 4 4 C 1.50696 * 109.47592 * 180.02562 * 3 2 1 5 5 O 1.21284 * 120.00109 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00137 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46684 * 179.97438 * 7 6 4 9 9 C 1.50706 * 109.46573 * 179.97438 * 8 7 6 10 10 O 1.21274 * 120.00042 * 359.72068 * 9 8 7 11 11 N 1.34777 * 119.99766 * 179.97438 * 9 8 7 12 12 C 1.47030 * 125.64636 * 0.02997 * 11 9 8 13 13 C 1.54323 * 107.26779 * 181.02120 * 12 11 9 14 14 C 1.55157 * 102.94782 * 22.18684 * 13 12 11 15 15 O 1.42898 * 110.99946 * 82.56991 * 14 13 12 16 16 C 1.50688 * 111.00989 * 206.42514 * 14 13 12 17 17 H 1.08001 * 120.00273 * 118.54668 * 16 14 13 18 18 C 1.37883 * 120.00194 * 298.55163 * 16 14 13 19 19 N 1.31518 * 119.99611 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00057 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47388 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47079 * 119.99718 * 20 18 16 23 23 H 1.48499 * 109.47028 * 239.99368 * 20 18 16 24 24 C 1.47423 * 125.65100 * 179.71255 * 11 9 8 25 25 H 1.09002 * 109.46496 * 299.99244 * 1 2 3 26 26 H 1.08995 * 109.47308 * 59.99708 * 1 2 3 27 27 H 1.09000 * 109.46803 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46889 * 60.00385 * 3 2 1 29 29 H 1.08996 * 109.47215 * 300.00790 * 3 2 1 30 30 H 0.96999 * 120.00047 * 359.97438 * 6 4 3 31 31 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 32 32 H 1.09001 * 109.46577 * 299.99570 * 7 6 4 33 33 H 1.09000 * 109.47486 * 59.99935 * 8 7 6 34 34 H 1.09001 * 109.47362 * 299.99212 * 8 7 6 35 35 H 1.08994 * 109.88106 * 300.43066 * 12 11 9 36 36 H 1.08991 * 109.88401 * 61.44691 * 12 11 9 37 37 H 1.08997 * 110.72122 * 140.55887 * 13 12 11 38 38 H 1.09005 * 110.71823 * 263.82555 * 13 12 11 39 39 H 0.96697 * 114.00047 * 61.46062 * 15 14 13 40 40 H 0.96999 * 119.99889 * 180.02562 * 19 18 16 41 41 H 1.08997 * 110.36971 * 274.75260 * 24 11 9 42 42 H 1.09002 * 110.36287 * 37.07212 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0342 0.0915 -0.0015 6 7 4.2765 2.2968 -0.0002 7 6 5.7370 2.1811 -0.0014 8 6 6.3592 3.5788 -0.0013 9 6 7.8615 3.4598 -0.0019 10 8 8.3831 2.3649 0.0028 11 7 8.6255 4.5701 -0.0024 12 6 8.1268 5.9533 -0.0018 13 6 9.3576 6.8839 -0.0290 14 6 10.4692 5.9733 -0.6143 15 8 10.4004 5.9339 -2.0411 16 6 11.8323 6.4206 -0.1534 17 1 12.4492 5.7558 0.4330 18 6 12.2922 7.6787 -0.4804 19 7 11.5412 8.4881 -1.1949 20 14 13.9823 8.2328 0.0903 21 1 14.6222 7.1447 0.8724 22 1 14.8229 8.5542 -1.0909 23 1 13.8453 9.4404 0.9436 24 6 10.0994 4.5990 0.0030 25 1 -0.3632 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8593 3.1725 0.0001 31 1 6.0579 1.6409 -0.8921 32 1 6.0591 1.6394 0.8879 33 1 6.0383 4.1194 0.8892 34 1 6.0370 4.1201 -0.8908 35 1 7.5120 6.1260 -0.8851 36 1 7.5410 6.1358 0.8990 37 1 9.1789 7.7407 -0.6787 38 1 9.6168 7.2100 0.9783 39 1 10.5283 6.7936 -2.4649 40 1 11.8649 9.3730 -1.4253 41 1 10.4766 4.5249 1.0230 42 1 10.4969 3.7894 -0.6091 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349454678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:57 Heat of formation + Delta-G solvation = -193.067877 kcal Electronic energy + Delta-G solvation = -24186.240428 eV Core-core repulsion = 20358.374402 eV Total energy + Delta-G solvation = -3827.866026 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.21269 -40.71077 -39.04642 -38.40617 -36.26252 -36.05933 -34.21235 -32.63688 -31.34503 -30.09037 -29.45946 -27.29426 -26.62830 -24.71342 -23.42482 -21.88421 -21.55451 -20.16721 -19.09891 -18.44660 -18.20178 -17.57838 -17.43130 -17.02850 -16.90025 -16.53844 -16.34958 -15.97723 -15.76733 -15.42287 -15.21417 -14.79114 -14.56911 -14.03028 -13.95092 -13.66578 -13.54521 -13.23531 -13.12536 -13.02208 -12.91463 -12.62606 -12.50976 -12.42479 -12.32941 -12.25194 -11.81765 -11.26082 -11.09116 -10.86385 -10.73853 -10.63035 -10.20969 -10.13671 -9.56455 -8.24159 -6.38187 1.40186 1.45381 1.54113 1.54460 1.61674 1.66339 2.20123 2.40943 3.00919 3.14734 3.53240 3.72626 3.80956 3.89895 4.02214 4.06793 4.23552 4.31882 4.37840 4.42736 4.46861 4.53097 4.61041 4.61642 4.76235 4.81565 4.90106 4.90924 4.92922 5.20378 5.27870 5.31648 5.47969 5.58138 5.78922 6.06992 6.10051 6.53689 6.62869 6.67353 7.13787 7.22937 7.32170 7.41158 8.81662 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.050558 B = 0.002304 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.687126 B =12148.748017 C =12406.018510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.048 3.952 4 C 0.503 3.497 5 O -0.583 6.583 6 N -0.707 5.707 7 C 0.143 3.857 8 C -0.127 4.127 9 C 0.517 3.483 10 O -0.599 6.599 11 N -0.610 5.610 12 C 0.104 3.896 13 C -0.128 4.128 14 C 0.232 3.768 15 O -0.593 6.593 16 C -0.562 4.562 17 H 0.051 0.949 18 C 0.039 3.961 19 N -0.904 5.904 20 Si 0.957 3.043 21 H -0.277 1.277 22 H -0.281 1.281 23 H -0.274 1.274 24 C 0.123 3.877 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.425 0.575 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.378 0.622 40 H 0.271 0.729 41 H 0.071 0.929 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.939 -1.032 3.303 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.031 4.031 4 C 0.290 3.710 5 O -0.462 6.462 6 N -0.363 5.363 7 C 0.018 3.982 8 C -0.167 4.167 9 C 0.307 3.693 10 O -0.481 6.481 11 N -0.342 5.342 12 C -0.017 4.017 13 C -0.166 4.166 14 C 0.192 3.808 15 O -0.402 6.402 16 C -0.600 4.600 17 H 0.069 0.931 18 C -0.163 4.163 19 N -0.543 5.543 20 Si 0.783 3.217 21 H -0.201 1.201 22 H -0.207 1.207 23 H -0.199 1.199 24 C 0.000 4.000 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.263 0.737 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.227 0.773 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -22.376 -3.055 3.347 22.830 hybrid contribution 1.371 1.321 -0.007 1.904 sum -21.006 -1.733 3.340 21.340 Atomic orbital electron populations 1.23032 0.78151 1.04072 1.01816 1.87973 1.22281 1.27103 1.95846 1.22391 0.88063 0.86730 1.05874 1.21156 0.90637 0.83877 0.75348 1.90746 1.76022 1.29064 1.50331 1.45603 1.05834 1.09648 1.75203 1.20745 0.79345 0.96304 1.01762 1.21701 0.88503 0.98218 1.08229 1.20872 0.90627 0.82233 0.75536 1.90695 1.76391 1.27848 1.53214 1.48696 1.06984 1.07270 1.71221 1.22301 0.97312 0.79195 1.02915 1.22954 0.94198 0.98111 1.01372 1.19825 0.92910 0.89435 0.78600 1.86130 1.95409 1.36985 1.21639 1.21701 1.02778 1.00297 1.35270 0.93088 1.25555 1.00527 0.96035 0.94191 1.69769 1.37855 1.08854 1.37780 0.85531 0.80039 0.78076 0.78077 1.20138 1.20734 1.19913 1.22162 0.80201 0.98218 0.99410 0.91967 0.92048 0.89107 0.86609 0.86753 0.73658 0.93361 0.92863 0.84429 0.85204 0.90042 0.88439 0.90462 0.91979 0.77284 0.91958 0.91091 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -8.20 10.24 -129.95 -1.33 -9.53 16 3 C 0.05 0.61 6.42 71.23 0.46 1.07 16 4 C 0.50 11.19 7.91 87.66 0.69 11.88 16 5 O -0.58 -20.79 16.50 15.99 0.26 -20.53 16 6 N -0.71 -11.40 5.56 -463.05 -2.57 -13.97 16 7 C 0.14 3.45 4.96 86.38 0.43 3.88 16 8 C -0.13 -2.50 5.01 29.85 0.15 -2.36 16 9 C 0.52 17.53 7.85 87.66 0.69 18.21 16 10 O -0.60 -26.24 16.24 -3.01 -0.05 -26.29 16 11 N -0.61 -21.79 3.32 -811.36 -2.70 -24.49 16 12 C 0.10 3.04 6.49 86.73 0.56 3.61 16 13 C -0.13 -4.97 5.38 31.78 0.17 -4.80 16 14 C 0.23 10.88 0.87 -10.07 -0.01 10.87 16 15 O -0.59 -29.56 13.17 -148.98 -1.96 -31.52 16 16 C -0.56 -29.02 8.27 25.60 0.21 -28.81 16 17 H 0.05 2.69 7.79 -2.91 -0.02 2.67 16 18 C 0.04 1.93 5.29 84.66 0.45 2.37 16 19 N -0.90 -44.61 10.76 21.45 0.23 -44.38 16 20 Si 0.96 40.50 29.54 68.60 2.03 42.53 16 21 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 24 C 0.12 5.45 6.09 86.93 0.53 5.98 16 25 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.42 2.55 8.47 -92.71 -0.79 1.76 16 31 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 32 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 33 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.08 3.15 7.55 -2.39 -0.02 3.14 16 38 H 0.06 2.46 8.03 -2.38 -0.02 2.45 16 39 H 0.38 18.69 7.57 -74.06 -0.56 18.13 16 40 H 0.27 12.71 8.31 -92.71 -0.77 11.94 16 41 H 0.07 3.09 8.03 -2.39 -0.02 3.07 16 42 H 0.04 2.02 8.04 -2.39 -0.02 2.00 16 Total: -1.00 -78.15 355.44 -0.82 -78.97 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -0.31 Total: 25.81 kcal Atomic # 6 Polarization: 17.83 SS G_CDS: 5.58 Total: 23.40 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -5.04 Total: -82.84 kcal Atomic # 8 Polarization: -84.80 SS G_CDS: -3.08 Total: -87.87 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -78.15 -0.82 -78.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349454678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.095 kcal (2) G-P(sol) polarization free energy of solvation -78.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds