Wall clock time and date at job start Tue Mar 31 2020 04:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36946 * 119.99722 * 2 1 4 4 H 1.07997 * 119.99654 * 202.70870 * 3 2 1 5 5 C 1.38809 * 119.99941 * 22.70340 * 3 2 1 6 6 N 1.31616 * 120.00156 * 11.50611 * 5 3 2 7 7 Si 1.86806 * 119.99821 * 191.50772 * 5 3 2 8 8 H 1.48499 * 109.47213 * 90.00187 * 7 5 3 9 9 H 1.48500 * 109.46656 * 210.00000 * 7 5 3 10 10 H 1.48499 * 109.46809 * 329.99958 * 7 5 3 11 11 C 1.46494 * 120.00172 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47427 * 270.00415 * 11 2 1 13 13 O 1.42901 * 109.47122 * 64.99994 * 12 11 2 14 14 C 1.42902 * 113.99751 * 180.02562 * 13 12 11 15 15 C 1.53008 * 109.46790 * 180.02562 * 14 13 12 16 16 N 1.46502 * 109.47007 * 64.99932 * 15 14 13 17 17 C 1.34780 * 119.99465 * 180.02562 * 16 15 14 18 18 O 1.21730 * 120.00272 * 359.97438 * 17 16 15 19 19 C 1.46379 * 119.99680 * 179.97438 * 17 16 15 20 20 C 1.33978 * 119.22936 * 359.97438 * 19 17 16 21 21 O 1.35000 * 121.68660 * 180.39336 * 20 19 17 22 22 C 1.43249 * 116.76535 * 342.79499 * 21 20 19 23 23 C 1.53553 * 108.08432 * 45.48830 * 22 21 20 24 24 O 1.36206 * 119.23197 * 179.72769 * 19 17 16 25 25 H 1.08999 * 109.47627 * 273.91942 * 1 2 3 26 26 H 1.09006 * 109.47311 * 33.92478 * 1 2 3 27 27 H 1.09001 * 109.47311 * 153.92007 * 1 2 3 28 28 H 0.97005 * 120.00206 * 179.97438 * 6 5 3 29 29 H 1.09003 * 109.47104 * 150.00495 * 11 2 1 30 30 H 1.09000 * 109.47287 * 30.00598 * 11 2 1 31 31 H 1.09007 * 109.47110 * 305.00148 * 12 11 2 32 32 H 1.09001 * 109.47631 * 185.00426 * 12 11 2 33 33 H 1.09002 * 109.47336 * 59.99929 * 14 13 12 34 34 H 1.08998 * 109.47033 * 299.99514 * 14 13 12 35 35 H 1.09003 * 109.47260 * 304.99851 * 15 14 13 36 36 H 1.08995 * 109.46935 * 184.99774 * 15 14 13 37 37 H 0.96994 * 120.00028 * 0.02562 * 16 15 14 38 38 H 1.07997 * 119.15995 * 0.37428 * 20 19 17 39 39 H 1.08992 * 109.74286 * 165.13837 * 22 21 20 40 40 H 1.09003 * 109.74162 * 285.84396 * 22 21 20 41 41 H 1.08997 * 109.75417 * 61.47584 * 23 22 21 42 42 H 1.09001 * 109.75379 * 182.21639 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1668 1.2223 -0.3611 5 6 1.5362 2.3415 0.4640 6 7 0.3916 2.2654 1.1092 7 14 2.3352 4.0047 0.1725 8 1 1.8558 4.5651 -1.1164 9 1 1.9743 4.9278 1.2784 10 1 3.8106 3.8433 0.1239 11 6 2.1975 -1.2686 0.0006 12 6 2.4524 -1.7098 1.4432 13 8 1.2059 -1.9927 2.0821 14 6 1.3323 -2.4151 3.4415 15 6 -0.0568 -2.6892 4.0215 16 7 -0.6646 -3.8218 3.3186 17 6 -1.8972 -4.2452 3.6623 18 8 -2.5051 -3.6869 4.5570 19 6 -2.5048 -5.3764 2.9596 20 6 -1.8222 -5.9793 1.9769 21 8 -2.3380 -7.0214 1.2912 22 6 -3.4540 -7.6953 1.8847 23 6 -4.4411 -6.6316 2.3867 24 8 -3.7489 -5.7949 3.3235 25 1 -0.3634 0.0702 1.0252 26 1 -0.3634 0.8528 -0.5736 27 1 -0.3634 -0.9230 -0.4518 28 1 -0.0369 3.0728 1.4338 29 1 3.1499 -1.1385 -0.5133 30 1 1.6085 -2.0285 -0.5130 31 1 2.9641 -0.9122 1.9820 32 1 3.0732 -2.6057 1.4449 33 1 1.8206 -1.6319 4.0214 34 1 1.9299 -3.3256 3.4849 35 1 -0.6832 -1.8059 3.8973 36 1 0.0324 -2.9252 5.0818 37 1 -0.1801 -4.2669 2.6059 38 1 -0.8341 -5.6221 1.7268 39 1 -3.9402 -8.3273 1.1416 40 1 -3.1133 -8.3053 2.7214 41 1 -4.7973 -6.0343 1.5474 42 1 -5.2845 -7.1151 2.8797 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485771046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:19 Heat of formation + Delta-G solvation = -129.195005 kcal Electronic energy + Delta-G solvation = -24771.857288 eV Core-core repulsion = 20946.760997 eV Total energy + Delta-G solvation = -3825.096291 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.12056 -40.49678 -39.01357 -38.01500 -37.18148 -35.83918 -33.58884 -33.13792 -31.08547 -29.91770 -28.85977 -27.79515 -26.37162 -24.81627 -23.91539 -22.73640 -22.11309 -20.59706 -19.53914 -19.32884 -18.75435 -17.59925 -17.52977 -17.14172 -16.84650 -16.68311 -16.18831 -15.96165 -15.70216 -15.38019 -15.32336 -15.20368 -15.17488 -14.81299 -14.30793 -14.03405 -13.81963 -13.15662 -13.12361 -13.01714 -12.71296 -12.51163 -12.47687 -12.31062 -12.01058 -11.98071 -11.77788 -11.69992 -11.64145 -11.06812 -10.60484 -10.35841 -10.28756 -9.27785 -8.71394 -7.76455 -5.24749 0.21787 1.47176 1.48677 1.54513 1.57100 2.09210 2.21236 2.53770 2.71137 2.90670 3.36691 3.39515 3.69836 3.79590 3.93986 3.97115 3.98926 4.19378 4.26063 4.42713 4.48512 4.55951 4.62423 4.63103 4.65329 4.72086 4.81703 4.89909 4.96271 5.03605 5.23819 5.27446 5.39264 5.67955 5.74768 5.85056 6.17312 6.37215 6.49207 6.50821 7.08235 7.20569 7.94585 8.39821 9.26482 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.022052 B = 0.003012 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.392696 B = 9294.057292 C = 9391.022546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.195 3.805 2 N -0.613 5.613 3 C -0.260 4.260 4 H 0.076 0.924 5 C -0.057 4.057 6 N -0.937 5.937 7 Si 0.966 3.034 8 H -0.288 1.288 9 H -0.300 1.300 10 H -0.265 1.265 11 C 0.144 3.856 12 C 0.051 3.949 13 O -0.395 6.395 14 C 0.054 3.946 15 C 0.131 3.869 16 N -0.698 5.698 17 C 0.569 3.431 18 O -0.582 6.582 19 C -0.102 4.102 20 C 0.043 3.957 21 O -0.306 6.306 22 C 0.012 3.988 23 C 0.009 3.991 24 O -0.322 6.322 25 H -0.001 1.001 26 H 0.007 0.993 27 H 0.020 0.980 28 H 0.243 0.757 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.021 0.979 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.096 0.904 37 H 0.415 0.585 38 H 0.203 0.797 39 H 0.157 0.843 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.911 -23.767 1.255 23.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.337 5.337 3 C -0.390 4.390 4 H 0.093 0.907 5 C -0.252 4.252 6 N -0.584 5.584 7 Si 0.795 3.205 8 H -0.216 1.216 9 H -0.227 1.227 10 H -0.189 1.189 11 C 0.018 3.982 12 C -0.028 4.028 13 O -0.314 6.314 14 C -0.023 4.023 15 C 0.008 3.992 16 N -0.353 5.353 17 C 0.358 3.642 18 O -0.463 6.463 19 C -0.151 4.151 20 C -0.024 4.024 21 O -0.217 6.217 22 C -0.062 4.062 23 C -0.066 4.066 24 O -0.237 6.237 25 H 0.017 0.983 26 H 0.025 0.975 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.114 0.886 37 H 0.253 0.747 38 H 0.219 0.781 39 H 0.174 0.826 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.631 -23.277 1.819 23.495 hybrid contribution 0.262 1.275 0.078 1.304 sum -2.370 -22.001 1.897 22.210 Atomic orbital electron populations 1.20312 0.83040 0.94666 0.96971 1.44108 1.01997 1.01713 1.85856 1.19599 0.98419 0.86702 1.34325 0.90663 1.25814 0.98547 1.01873 0.98939 1.70290 1.19714 1.27063 1.41380 0.85274 0.78592 0.80077 0.76543 1.21552 1.22672 1.18918 1.21162 0.96795 0.87021 0.93234 1.23266 0.85293 0.98116 0.96077 1.87970 1.31039 1.87819 1.24606 1.22723 0.95383 1.00076 0.84139 1.21355 0.93191 0.88086 0.96599 1.45583 1.16264 1.34132 1.39311 1.17553 0.81489 0.82555 0.82605 1.90812 1.63113 1.59206 1.33168 1.20136 0.89230 1.00815 1.04909 1.23486 0.98242 0.88075 0.92606 1.86113 1.47396 1.41948 1.46275 1.24059 0.86128 0.94069 1.01962 1.24042 0.95881 0.92507 0.94198 1.86394 1.26207 1.66487 1.44580 0.98286 0.97469 0.96192 0.94738 0.90906 0.91943 0.96059 0.90834 0.92361 0.89553 0.93688 0.88595 0.74669 0.78061 0.82551 0.89088 0.90499 0.83401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.23 8.61 127.77 1.10 11.33 16 2 N -0.61 -30.89 2.89 -726.96 -2.10 -32.99 16 3 C -0.26 -14.26 9.67 84.03 0.81 -13.45 16 4 H 0.08 3.91 7.85 -2.91 -0.02 3.89 16 5 C -0.06 -3.25 5.12 84.86 0.43 -2.81 16 6 N -0.94 -57.53 10.62 21.65 0.23 -57.30 16 7 Si 0.97 45.76 29.57 68.60 2.03 47.79 16 8 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 9 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 10 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 11 C 0.14 5.44 6.11 86.38 0.53 5.97 16 12 C 0.05 1.71 6.28 71.98 0.45 2.16 16 13 O -0.39 -13.74 9.84 -148.98 -1.47 -15.21 16 14 C 0.05 1.42 6.07 71.98 0.44 1.86 16 15 C 0.13 3.72 6.06 86.38 0.52 4.25 16 16 N -0.70 -17.95 5.43 -467.34 -2.54 -20.49 16 17 C 0.57 17.94 7.73 86.36 0.67 18.61 16 18 O -0.58 -24.01 16.92 10.11 0.17 -23.84 16 19 C -0.10 -2.65 6.61 23.42 0.15 -2.50 16 20 C 0.04 0.80 10.57 66.85 0.71 1.51 16 21 O -0.31 -5.03 10.47 -69.22 -0.72 -5.75 16 22 C 0.01 0.13 7.29 72.17 0.53 0.65 16 23 C 0.01 0.13 7.32 72.17 0.53 0.65 16 24 O -0.32 -8.60 10.29 -71.68 -0.74 -9.34 16 25 H 0.00 -0.07 7.43 -2.39 -0.02 -0.09 16 26 H 0.01 0.38 7.20 -2.38 -0.02 0.36 16 27 H 0.02 0.90 7.85 -2.39 -0.02 0.88 16 28 H 0.24 14.66 8.31 -92.70 -0.77 13.89 16 29 H 0.07 2.52 8.03 -2.39 -0.02 2.50 16 30 H 0.06 2.12 7.87 -2.39 -0.02 2.10 16 31 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.41 7.97 6.31 -92.71 -0.59 7.38 16 38 H 0.20 2.59 6.08 -2.91 -0.02 2.57 16 39 H 0.16 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -81.68 353.13 2.17 -79.51 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.44 Total: 9.38 kcal Atomic # 6 Polarization: 21.37 SS G_CDS: 6.87 Total: 28.24 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -4.41 Total: -110.78 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -2.76 Total: -54.14 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -81.68 2.17 -79.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485771046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.682 kcal (2) G-P(sol) polarization free energy of solvation -81.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds