Wall clock time and date at job start Tue Mar 31 2020 03:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48503 * 109.46884 * 269.99936 * 3 2 1 5 5 H 1.48501 * 109.47279 * 29.99586 * 3 2 1 6 6 H 1.48494 * 109.47076 * 150.00030 * 3 2 1 7 7 C 1.37875 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99657 * 180.02562 * 7 2 1 9 9 C 1.50689 * 120.00459 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47565 * 300.00172 * 9 7 2 11 11 O 1.42904 * 109.47211 * 59.99733 * 9 7 2 12 12 C 1.53000 * 109.47835 * 179.97438 * 9 7 2 13 13 N 1.46895 * 109.47597 * 179.97438 * 12 9 7 14 14 C 1.46847 * 110.99982 * 189.99795 * 13 12 9 15 15 C 1.53034 * 109.51345 * 185.84805 * 14 13 12 16 16 C 1.53123 * 109.27992 * 300.80438 * 15 14 13 17 17 C 1.50693 * 109.57574 * 177.60215 * 16 15 14 18 18 O 1.21284 * 120.00454 * 240.29824 * 17 16 15 19 19 N 1.34782 * 120.00294 * 60.30002 * 17 16 15 20 20 C 1.46500 * 120.00310 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.46756 * 179.97438 * 20 19 17 22 22 O 1.20819 * 120.00740 * 359.97438 * 21 20 19 23 23 O 1.34231 * 119.99522 * 180.02562 * 21 20 19 24 24 C 1.53127 * 109.15019 * 57.67185 * 16 15 14 25 25 C 1.46843 * 110.99970 * 314.21160 * 13 12 9 26 26 H 0.97004 * 120.00036 * 359.97438 * 1 2 3 27 27 H 0.96706 * 113.99859 * 60.00295 * 11 9 7 28 28 H 1.08997 * 109.46731 * 59.99532 * 12 9 7 29 29 H 1.09001 * 109.46741 * 300.00746 * 12 9 7 30 30 H 1.09002 * 109.46481 * 305.85957 * 14 13 12 31 31 H 1.08994 * 109.46283 * 65.83811 * 14 13 12 32 32 H 1.08997 * 109.50952 * 60.75924 * 15 14 13 33 33 H 1.08998 * 109.50459 * 180.87821 * 15 14 13 34 34 H 1.09003 * 109.53012 * 297.76758 * 16 15 14 35 35 H 0.96996 * 119.99351 * 359.97438 * 19 17 16 36 36 H 1.09002 * 109.46943 * 299.99829 * 20 19 17 37 37 H 1.09000 * 109.47163 * 59.99517 * 20 19 17 38 38 H 0.96706 * 117.00117 * 180.02562 * 23 21 20 39 39 H 1.08997 * 109.49981 * 182.39822 * 24 16 15 40 40 H 1.08998 * 109.53089 * 62.30397 * 24 16 15 41 41 H 1.08993 * 109.46313 * 294.17341 * 25 13 12 42 42 H 1.09000 * 109.46480 * 54.15451 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8919 11 8 0.4290 -2.5756 -1.1647 12 6 2.2453 -3.6621 0.0015 13 7 1.5108 -4.9342 0.0032 14 6 2.4172 -6.0649 0.2410 15 6 1.6461 -7.3783 0.0917 16 6 0.4925 -7.4046 1.0982 17 6 -0.3068 -8.6692 0.9171 18 8 -1.4826 -8.6070 0.6262 19 7 0.2848 -9.8694 1.0785 20 6 -0.4921 -11.0988 0.9019 21 6 0.3969 -12.2928 1.1360 22 8 1.5602 -12.1334 1.4207 23 8 -0.1034 -13.5336 1.0273 24 6 -0.4096 -6.1905 0.8601 25 6 0.4209 -4.9113 0.9870 26 1 -0.4850 0.8401 0.0004 27 1 0.9208 -2.5308 -1.9961 28 1 2.8726 -3.6039 0.8909 29 1 2.8713 -3.6047 -0.8890 30 1 3.2308 -6.0369 -0.4838 31 1 2.8263 -5.9965 1.2490 32 1 1.2482 -7.4538 -0.9202 33 1 2.3154 -8.2170 0.2836 34 1 0.8922 -7.3683 2.1117 35 1 1.2252 -9.9191 1.3108 36 1 -1.3162 -11.1134 1.6152 37 1 -0.8892 -11.1351 -0.1126 38 1 0.5052 -14.2680 1.1870 39 1 -1.2091 -6.1803 1.6010 40 1 -0.8405 -6.2471 -0.1395 41 1 0.8395 -4.8482 1.9914 42 1 -0.2156 -4.0456 0.8038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574240999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:49 Heat of formation + Delta-G solvation = -176.982666 kcal Electronic energy + Delta-G solvation = -24616.026373 eV Core-core repulsion = 20788.857854 eV Total energy + Delta-G solvation = -3827.168519 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.03029 -40.07882 -38.28115 -36.82138 -35.59407 -34.87265 -32.97259 -32.05237 -30.61708 -29.27352 -27.97419 -25.52122 -23.57548 -23.00294 -22.07446 -21.04207 -20.18090 -19.35907 -18.63029 -17.95062 -17.06393 -16.78149 -16.30966 -16.01216 -15.41148 -14.90331 -14.72279 -14.57720 -14.27945 -14.23274 -13.87761 -13.45767 -13.34492 -13.21151 -13.07650 -12.56129 -12.41630 -12.14067 -11.89663 -11.31821 -11.26812 -11.09382 -10.91709 -10.89713 -10.80579 -10.68609 -10.47370 -10.18597 -10.06282 -9.81080 -9.53724 -8.86782 -8.53982 -8.03938 -7.66588 -5.99533 -4.17612 1.55264 2.12793 2.45705 3.03341 3.28262 3.35396 3.37600 4.32339 4.43384 4.51599 4.62214 4.73648 4.81830 4.86468 4.94797 5.28069 5.30315 5.43074 5.58833 5.72657 5.76945 5.85786 5.87144 5.93134 6.03622 6.05817 6.18926 6.25137 6.33346 6.48844 6.60875 6.69129 6.86021 7.12900 7.25153 7.60207 7.68752 7.79994 7.86849 7.97138 8.21536 8.85778 9.46826 9.62768 11.04569 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.046173 B = 0.002525 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.265185 B =11086.131936 C =11455.796585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.574 4.574 8 H 0.054 0.946 9 C 0.229 3.771 10 H 0.058 0.942 11 O -0.555 6.555 12 C 0.031 3.969 13 N -0.529 5.529 14 C 0.055 3.945 15 C -0.104 4.104 16 C -0.104 4.104 17 C 0.527 3.473 18 O -0.530 6.530 19 N -0.730 5.730 20 C 0.126 3.874 21 C 0.479 3.521 22 O -0.511 6.511 23 O -0.510 6.510 24 C -0.093 4.093 25 C 0.052 3.948 26 H 0.260 0.740 27 H 0.345 0.655 28 H 0.026 0.974 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.412 0.588 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.417 0.583 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.023 0.977 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 -24.035 2.950 24.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.613 4.613 8 H 0.073 0.927 9 C 0.171 3.829 10 H 0.076 0.924 11 O -0.357 6.357 12 C -0.097 4.097 13 N -0.253 5.253 14 C -0.074 4.074 15 C -0.143 4.143 16 C -0.126 4.126 17 C 0.314 3.686 18 O -0.405 6.405 19 N -0.389 5.389 20 C 0.001 3.999 21 C 0.320 3.680 22 O -0.399 6.399 23 O -0.322 6.322 24 C -0.131 4.131 25 C -0.076 4.076 26 H 0.070 0.930 27 H 0.188 0.812 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.249 0.751 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.276 0.724 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.041 0.959 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.284 -23.635 2.755 23.797 hybrid contribution 2.355 0.430 0.739 2.505 sum 2.639 -23.205 3.495 23.614 Atomic orbital electron populations 1.70075 1.05881 1.26418 1.47018 1.25022 0.94691 0.99069 0.93882 0.86678 0.79913 0.83582 0.78206 1.20519 1.21149 1.19933 1.21647 0.93146 0.91615 1.54846 0.92746 1.19449 0.87858 0.88869 0.86700 0.92406 1.86543 1.37805 1.96293 1.15088 1.23047 0.97544 0.89564 0.99521 1.61950 1.11105 1.02905 1.49380 1.22045 0.95110 0.90875 0.99327 1.21579 0.95510 0.97633 0.99531 1.21457 0.97199 0.92331 1.01580 1.20914 0.87899 0.84321 0.75434 1.90725 1.16325 1.87165 1.46320 1.45894 1.15042 1.04204 1.73739 1.20568 0.93196 0.80351 1.05770 1.23312 0.87216 0.84787 0.72640 1.90746 1.18700 1.86357 1.44143 1.84493 1.48065 1.16594 1.83027 1.21441 0.96623 0.91335 1.03696 1.22229 0.94131 0.98734 0.92522 0.92983 0.81169 0.95609 0.91721 0.90861 0.95415 0.90448 0.91693 0.88757 0.75051 0.86938 0.86873 0.72365 0.91268 0.90134 0.95857 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.25 12.84 55.43 0.71 -24.54 16 2 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.57 -15.60 8.76 -34.45 -0.30 -15.90 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.23 5.68 2.12 -27.89 -0.06 5.63 16 10 H 0.06 1.56 6.21 -51.93 -0.32 1.24 16 11 O -0.56 -14.25 12.40 -35.23 -0.44 -14.69 16 12 C 0.03 0.62 4.87 -3.83 -0.02 0.60 16 13 N -0.53 -9.34 4.67 -234.68 -1.10 -10.44 16 14 C 0.05 0.76 5.42 -3.84 -0.02 0.74 16 15 C -0.10 -1.21 5.26 -26.65 -0.14 -1.35 16 16 C -0.10 -1.26 2.59 -91.65 -0.24 -1.50 16 17 C 0.53 6.35 7.16 -10.99 -0.08 6.27 16 18 O -0.53 -8.18 15.98 5.55 0.09 -8.09 16 19 N -0.73 -6.64 5.43 -61.47 -0.33 -6.97 16 20 C 0.13 0.92 6.27 -5.19 -0.03 0.88 16 21 C 0.48 3.30 8.40 36.00 0.30 3.61 16 22 O -0.51 -4.93 16.43 -18.74 -0.31 -5.24 16 23 O -0.51 -2.34 13.42 -39.26 -0.53 -2.87 16 24 C -0.09 -1.40 4.68 -26.64 -0.12 -1.53 16 25 C 0.05 0.91 4.85 -3.83 -0.02 0.89 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.34 8.04 9.04 45.56 0.41 8.45 16 28 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.41 3.40 6.93 -40.82 -0.28 3.12 16 36 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.42 0.22 9.10 45.56 0.41 0.63 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 2.15 5.66 -51.93 -0.29 1.85 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -34.15 347.83 -7.16 -41.31 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -4.65 Total: 9.75 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -0.83 Total: 0.46 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: -0.72 Total: -41.95 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -1.18 Total: -30.88 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.15 -7.16 -41.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574240999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.678 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds