Wall clock time and date at job start Tue Mar 31 2020 03:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48503 * 109.46884 * 269.99936 * 3 2 1 5 5 H 1.48501 * 109.47279 * 29.99586 * 3 2 1 6 6 H 1.48494 * 109.47076 * 150.00030 * 3 2 1 7 7 C 1.37875 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99657 * 180.02562 * 7 2 1 9 9 C 1.50689 * 120.00459 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47565 * 300.00172 * 9 7 2 11 11 O 1.42904 * 109.47211 * 59.99733 * 9 7 2 12 12 C 1.53000 * 109.47835 * 179.97438 * 9 7 2 13 13 N 1.46895 * 109.47597 * 179.97438 * 12 9 7 14 14 C 1.46847 * 110.99982 * 189.99795 * 13 12 9 15 15 C 1.53034 * 109.51345 * 185.84805 * 14 13 12 16 16 C 1.53123 * 109.27992 * 300.80438 * 15 14 13 17 17 C 1.50693 * 109.57574 * 177.60215 * 16 15 14 18 18 O 1.21284 * 120.00454 * 240.29824 * 17 16 15 19 19 N 1.34782 * 120.00294 * 60.30002 * 17 16 15 20 20 C 1.46500 * 120.00310 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.46756 * 179.97438 * 20 19 17 22 22 O 1.20819 * 120.00740 * 359.97438 * 21 20 19 23 23 O 1.34231 * 119.99522 * 180.02562 * 21 20 19 24 24 C 1.53127 * 109.15019 * 57.67185 * 16 15 14 25 25 C 1.46843 * 110.99970 * 314.21160 * 13 12 9 26 26 H 0.97004 * 120.00036 * 359.97438 * 1 2 3 27 27 H 0.96706 * 113.99859 * 60.00295 * 11 9 7 28 28 H 1.08997 * 109.46731 * 59.99532 * 12 9 7 29 29 H 1.09001 * 109.46741 * 300.00746 * 12 9 7 30 30 H 1.09002 * 109.46481 * 305.85957 * 14 13 12 31 31 H 1.08994 * 109.46283 * 65.83811 * 14 13 12 32 32 H 1.08997 * 109.50952 * 60.75924 * 15 14 13 33 33 H 1.08998 * 109.50459 * 180.87821 * 15 14 13 34 34 H 1.09003 * 109.53012 * 297.76758 * 16 15 14 35 35 H 0.96996 * 119.99351 * 359.97438 * 19 17 16 36 36 H 1.09002 * 109.46943 * 299.99829 * 20 19 17 37 37 H 1.09000 * 109.47163 * 59.99517 * 20 19 17 38 38 H 0.96706 * 117.00117 * 180.02562 * 23 21 20 39 39 H 1.08997 * 109.49981 * 182.39822 * 24 16 15 40 40 H 1.08998 * 109.53089 * 62.30397 * 24 16 15 41 41 H 1.08993 * 109.46313 * 294.17341 * 25 13 12 42 42 H 1.09000 * 109.46480 * 54.15451 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8919 11 8 0.4290 -2.5756 -1.1647 12 6 2.2453 -3.6621 0.0015 13 7 1.5108 -4.9342 0.0032 14 6 2.4172 -6.0649 0.2410 15 6 1.6461 -7.3783 0.0917 16 6 0.4925 -7.4046 1.0982 17 6 -0.3068 -8.6692 0.9171 18 8 -1.4826 -8.6070 0.6262 19 7 0.2848 -9.8694 1.0785 20 6 -0.4921 -11.0988 0.9019 21 6 0.3969 -12.2928 1.1360 22 8 1.5602 -12.1334 1.4207 23 8 -0.1034 -13.5336 1.0273 24 6 -0.4096 -6.1905 0.8601 25 6 0.4209 -4.9113 0.9870 26 1 -0.4850 0.8401 0.0004 27 1 0.9208 -2.5308 -1.9961 28 1 2.8726 -3.6039 0.8909 29 1 2.8713 -3.6047 -0.8890 30 1 3.2308 -6.0369 -0.4838 31 1 2.8263 -5.9965 1.2490 32 1 1.2482 -7.4538 -0.9202 33 1 2.3154 -8.2170 0.2836 34 1 0.8922 -7.3683 2.1117 35 1 1.2252 -9.9191 1.3108 36 1 -1.3162 -11.1134 1.6152 37 1 -0.8892 -11.1351 -0.1126 38 1 0.5052 -14.2680 1.1870 39 1 -1.2091 -6.1803 1.6010 40 1 -0.8405 -6.2471 -0.1395 41 1 0.8395 -4.8482 1.9914 42 1 -0.2156 -4.0456 0.8038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574240999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:48 Heat of formation + Delta-G solvation = -206.695101 kcal Electronic energy + Delta-G solvation = -24617.314801 eV Core-core repulsion = 20788.857854 eV Total energy + Delta-G solvation = -3828.456947 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.70324 -40.96631 -39.58376 -37.40858 -37.28016 -35.68940 -34.40757 -34.12694 -31.82097 -30.44662 -29.35463 -27.09024 -25.12115 -24.17425 -22.81937 -22.20184 -21.47915 -20.61510 -19.24894 -19.09415 -18.64081 -17.36414 -17.16975 -16.90144 -16.66549 -16.44783 -16.32991 -16.03866 -15.68068 -15.49245 -15.18529 -14.75643 -14.55088 -14.29193 -14.00816 -13.86623 -13.61104 -13.21953 -13.01196 -12.87875 -12.70372 -12.64241 -12.60335 -12.14927 -12.14334 -12.00682 -11.84308 -11.61048 -11.52742 -10.91272 -10.80375 -10.61828 -10.32924 -10.02762 -9.07514 -8.11527 -6.37086 1.03383 1.41596 1.41639 1.51605 1.52527 1.55924 2.37620 2.39664 3.08533 3.15156 3.56768 3.75430 3.84497 4.12991 4.21317 4.22713 4.25958 4.34223 4.36205 4.40321 4.51489 4.59391 4.60550 4.76558 4.79565 4.93737 5.01206 5.04837 5.16552 5.19653 5.21237 5.40972 5.49473 5.63356 5.79629 6.03863 6.25552 6.34755 6.39806 6.76429 6.85717 7.09958 7.36840 7.63502 8.92748 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.046173 B = 0.002525 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.265185 B =11086.131936 C =11455.796585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.025 3.975 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.587 4.587 8 H 0.059 0.941 9 C 0.229 3.771 10 H 0.027 0.973 11 O -0.571 6.571 12 C 0.048 3.952 13 N -0.539 5.539 14 C 0.052 3.948 15 C -0.095 4.095 16 C -0.099 4.099 17 C 0.532 3.468 18 O -0.570 6.570 19 N -0.717 5.717 20 C 0.121 3.879 21 C 0.492 3.508 22 O -0.540 6.540 23 O -0.504 6.504 24 C -0.084 4.084 25 C 0.059 3.941 26 H 0.260 0.740 27 H 0.353 0.647 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.419 0.581 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.436 0.564 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.029 0.971 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.806 -25.812 3.240 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.625 4.625 8 H 0.078 0.922 9 C 0.171 3.829 10 H 0.045 0.955 11 O -0.374 6.374 12 C -0.080 4.080 13 N -0.264 5.264 14 C -0.075 4.075 15 C -0.133 4.133 16 C -0.120 4.120 17 C 0.320 3.680 18 O -0.448 6.448 19 N -0.374 5.374 20 C -0.004 4.004 21 C 0.335 3.665 22 O -0.431 6.431 23 O -0.318 6.318 24 C -0.123 4.123 25 C -0.069 4.069 26 H 0.069 0.931 27 H 0.197 0.803 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.135 0.865 35 H 0.258 0.742 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.299 0.701 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.177 -25.477 3.049 25.751 hybrid contribution 1.745 0.872 0.650 2.056 sum 3.922 -24.605 3.699 25.189 Atomic orbital electron populations 1.70225 1.07652 1.27277 1.48515 1.25900 0.95470 1.02906 0.93492 0.85562 0.78705 0.78892 0.78408 1.19860 1.21046 1.18874 1.22068 0.93554 0.92835 1.54082 0.92240 1.19325 0.87907 0.90322 0.85342 0.95534 1.86501 1.38713 1.96445 1.15774 1.22666 0.96176 0.89362 0.99809 1.61902 1.11741 1.02963 1.49824 1.22188 0.94938 0.90067 1.00353 1.21543 0.95510 0.97585 0.98686 1.21372 0.96635 0.90980 1.03055 1.20736 0.87212 0.85002 0.75062 1.90720 1.17926 1.87690 1.48449 1.45715 1.15381 1.04019 1.72268 1.20702 0.93296 0.79824 1.06532 1.23065 0.86409 0.85254 0.71809 1.90743 1.19777 1.86823 1.45719 1.84452 1.48526 1.16440 1.82372 1.21266 0.96829 0.91867 1.02301 1.22037 0.93862 0.98261 0.92769 0.93071 0.80264 0.95443 0.91125 0.89715 0.94241 0.91592 0.87998 0.86534 0.74227 0.86057 0.86196 0.70129 0.91377 0.92476 0.95239 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.31 12.84 21.45 0.28 -54.04 16 2 C 0.02 1.38 5.40 84.65 0.46 1.84 16 3 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.59 -32.21 8.76 25.60 0.22 -31.98 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.23 11.69 2.12 29.84 0.06 11.75 16 10 H 0.03 1.53 6.21 -2.39 -0.01 1.51 16 11 O -0.57 -30.36 12.40 -148.98 -1.85 -32.21 16 12 C 0.05 1.93 4.87 86.30 0.42 2.35 16 13 N -0.54 -18.90 4.67 -896.40 -4.19 -23.08 16 14 C 0.05 1.33 5.42 86.32 0.47 1.79 16 15 C -0.10 -1.96 5.26 30.65 0.16 -1.79 16 16 C -0.10 -2.22 2.59 -11.46 -0.03 -2.25 16 17 C 0.53 12.00 7.16 87.65 0.63 12.62 16 18 O -0.57 -17.28 15.98 -3.04 -0.05 -17.33 16 19 N -0.72 -11.35 5.43 -466.79 -2.54 -13.88 16 20 C 0.12 1.50 6.27 85.63 0.54 2.04 16 21 C 0.49 5.62 8.40 71.24 0.60 6.22 16 22 O -0.54 -9.16 16.43 21.99 0.36 -8.80 16 23 O -0.50 -3.30 13.42 -51.43 -0.69 -3.99 16 24 C -0.08 -2.59 4.68 30.65 0.14 -2.44 16 25 C 0.06 2.12 4.85 86.33 0.42 2.53 16 26 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.35 16.91 9.04 -74.05 -0.67 16.24 16 28 H 0.03 1.09 8.08 -2.39 -0.02 1.07 16 29 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.08 1.99 8.12 -2.39 -0.02 1.98 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.10 1.40 7.67 -2.39 -0.02 1.39 16 34 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.42 5.65 6.93 -92.71 -0.64 5.01 16 36 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.44 -0.74 9.10 -74.05 -0.67 -1.41 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 2.01 8.04 -2.39 -0.02 1.99 16 41 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 2.59 5.66 -2.39 -0.01 2.57 16 Total: -1.00 -75.15 347.83 -3.48 -78.62 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -0.92 Total: 26.54 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 4.09 Total: 2.68 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -6.45 Total: -91.00 kcal Atomic # 8 Polarization: -60.11 SS G_CDS: -2.22 Total: -62.33 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -75.15 -3.48 -78.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574240999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.071 kcal (2) G-P(sol) polarization free energy of solvation -75.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds