Wall clock time and date at job start Tue Mar 31 2020 03:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99508 * 2 1 4 4 H 1.09004 * 109.47076 * 30.00162 * 3 2 1 5 5 C 1.50692 * 109.47424 * 269.99787 * 3 2 1 6 6 O 1.20831 * 120.00251 * 353.94169 * 5 3 2 7 7 O 1.34234 * 120.00335 * 173.93811 * 5 3 2 8 8 C 1.50704 * 109.46956 * 149.99731 * 3 2 1 9 9 O 1.21277 * 119.99888 * 14.08076 * 8 3 2 10 10 N 1.34781 * 119.99853 * 193.80320 * 8 3 2 11 11 C 1.46962 * 120.59681 * 5.30169 * 10 8 3 12 12 C 1.53809 * 108.39736 * 124.75717 * 11 10 8 13 13 H 1.08993 * 109.74457 * 289.84749 * 12 11 10 14 14 C 1.53005 * 109.66999 * 169.38573 * 12 11 10 15 15 N 1.46958 * 108.57900 * 49.63876 * 12 11 10 16 16 C 1.36945 * 120.59208 * 124.66287 * 15 12 11 17 17 H 1.07997 * 120.00289 * 322.46603 * 16 15 12 18 18 C 1.38816 * 119.99520 * 142.46002 * 16 15 12 19 19 N 1.31620 * 120.00073 * 1.08916 * 18 16 15 20 20 Si 1.86799 * 119.99887 * 181.09064 * 18 16 15 21 21 H 1.48491 * 109.47117 * 59.99900 * 20 18 16 22 22 H 1.48505 * 109.47041 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46819 * 300.00007 * 20 18 16 24 24 C 1.46967 * 118.81403 * 304.64792 * 15 12 11 25 25 H 1.08999 * 109.61140 * 174.97403 * 24 15 12 26 26 C 1.53001 * 109.60520 * 295.47785 * 24 15 12 27 27 C 1.46968 * 120.59165 * 185.58144 * 10 8 3 28 28 H 1.09001 * 109.47477 * 60.00499 * 1 2 3 29 29 H 1.09011 * 109.47061 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47604 * 299.99937 * 1 2 3 31 31 H 0.96700 * 116.99961 * 180.02562 * 7 5 3 32 32 H 1.09004 * 109.60602 * 244.54589 * 11 10 8 33 33 H 1.09000 * 109.60503 * 5.04809 * 11 10 8 34 34 H 1.09000 * 109.47496 * 305.57721 * 14 12 11 35 35 H 1.08997 * 109.47011 * 65.57958 * 14 12 11 36 36 H 1.09000 * 109.47081 * 185.57374 * 14 12 11 37 37 H 0.97002 * 119.99921 * 185.00060 * 19 18 16 38 38 H 1.09003 * 109.46663 * 179.14391 * 26 24 15 39 39 H 1.08995 * 109.47470 * 299.14504 * 26 24 15 40 40 H 1.09004 * 109.46876 * 59.14753 * 26 24 15 41 41 H 1.09003 * 109.61070 * 354.95229 * 27 10 8 42 42 H 1.08997 * 109.61110 * 115.28360 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9993 0.5139 5 6 2.2144 1.7644 -1.4207 6 8 1.9983 1.0073 -2.3373 7 8 2.6365 3.0144 -1.6682 8 6 3.3385 1.2640 0.7105 9 8 3.8678 0.1983 0.9449 10 7 3.9410 2.4115 1.0804 11 6 3.2631 3.7033 0.9026 12 6 3.2187 4.4195 2.2631 13 1 2.5261 3.9038 2.9282 14 6 2.7623 5.8669 2.0685 15 7 4.5676 4.4018 2.8458 16 6 5.1798 5.5677 3.2216 17 1 5.0521 6.4606 2.6276 18 6 5.9645 5.6019 4.3662 19 7 6.1376 4.5086 5.0784 20 14 6.7749 7.1995 4.8957 21 1 5.7305 8.2250 5.1459 22 1 7.5533 6.9712 6.1395 23 1 7.6855 7.6721 3.8220 24 6 5.2478 3.1105 3.0185 25 1 6.2639 3.2771 3.3761 26 6 4.4783 2.2558 4.0277 27 6 5.2900 2.3938 1.6633 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.7526 3.2631 -2.5954 32 1 3.8148 4.3100 0.1845 33 1 2.2482 3.5371 0.5415 34 1 3.4037 6.3546 1.3345 35 1 1.7314 5.8783 1.7147 36 1 2.8265 6.3988 3.0177 37 1 6.6250 4.5476 5.9162 38 1 4.9762 1.2930 4.1426 39 1 4.4497 2.7672 4.9898 40 1 3.4610 2.0984 3.6694 41 1 5.6140 1.3627 1.8046 42 1 5.9833 2.9068 0.9967 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593902162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:33 Heat of formation + Delta-G solvation = -147.890927 kcal Electronic energy + Delta-G solvation = -26828.944181 eV Core-core repulsion = 23003.037174 eV Total energy + Delta-G solvation = -3825.907007 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -42.12210 -40.74472 -39.25086 -38.40249 -37.14601 -35.72616 -34.27233 -33.29888 -31.10239 -29.66339 -27.83191 -27.41166 -26.82400 -25.42778 -23.56412 -22.47256 -21.40154 -20.28676 -19.35326 -18.99732 -18.42989 -17.80184 -17.57381 -17.05197 -16.70285 -16.26606 -15.99622 -15.73458 -15.50499 -15.42148 -15.21612 -14.78753 -14.36208 -14.30406 -13.69786 -13.50941 -13.40783 -13.01887 -12.82919 -12.74196 -12.69586 -12.53366 -12.39064 -12.29497 -12.22725 -12.16501 -11.95384 -11.69977 -11.52936 -11.46088 -11.12532 -10.72694 -10.35767 -9.76171 -8.32163 -7.77452 -5.31686 0.71162 1.28853 1.51837 1.54324 1.55621 1.60296 2.05154 2.57170 2.70219 3.21840 3.40987 3.50413 3.63342 4.04494 4.22995 4.25944 4.35962 4.40643 4.46781 4.57564 4.66190 4.71557 4.77677 4.78836 4.86980 5.00632 5.03403 5.15792 5.23721 5.32830 5.40753 5.49867 5.67809 5.72309 5.78039 5.81873 5.91446 6.37852 6.58377 6.80634 6.98104 7.28827 7.93923 8.50104 9.28059 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.025079 B = 0.004707 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.207850 B = 5946.827363 C = 6374.305474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.363 6.363 3 C 0.083 3.917 4 H 0.159 0.841 5 C 0.476 3.524 6 O -0.523 6.523 7 O -0.491 6.491 8 C 0.512 3.488 9 O -0.562 6.562 10 N -0.580 5.580 11 C 0.106 3.894 12 C 0.144 3.856 13 H 0.021 0.979 14 C -0.126 4.126 15 N -0.595 5.595 16 C -0.248 4.248 17 H 0.074 0.926 18 C -0.036 4.036 19 N -0.925 5.925 20 Si 0.954 3.046 21 H -0.278 1.278 22 H -0.304 1.304 23 H -0.280 1.280 24 C 0.182 3.818 25 H 0.079 0.921 26 C -0.119 4.119 27 C 0.104 3.896 28 H 0.056 0.944 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.434 0.566 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.246 0.754 38 H 0.029 0.971 39 H 0.045 0.955 40 H 0.025 0.975 41 H 0.071 0.929 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.929 0.067 -11.386 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.280 6.280 3 C 0.020 3.980 4 H 0.175 0.825 5 C 0.316 3.684 6 O -0.412 6.412 7 O -0.305 6.305 8 C 0.298 3.702 9 O -0.441 6.441 10 N -0.312 5.312 11 C -0.017 4.017 12 C 0.037 3.963 13 H 0.039 0.961 14 C -0.184 4.184 15 N -0.318 5.318 16 C -0.379 4.379 17 H 0.091 0.909 18 C -0.232 4.232 19 N -0.570 5.570 20 Si 0.783 3.217 21 H -0.204 1.204 22 H -0.231 1.231 23 H -0.206 1.206 24 C 0.074 3.926 25 H 0.096 0.904 26 C -0.178 4.178 27 C -0.020 4.020 28 H 0.075 0.925 29 H 0.128 0.872 30 H 0.091 0.909 31 H 0.297 0.703 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.507 -0.974 -11.009 15.955 hybrid contribution 0.681 0.834 0.242 1.104 sum -10.825 -0.140 -10.768 15.269 Atomic orbital electron populations 1.23336 0.77421 1.05489 1.01871 1.88144 1.23126 1.22732 1.94001 1.21468 0.96535 0.89536 0.90503 0.82458 1.23395 0.73008 0.80356 0.91612 1.90734 1.47863 1.55728 1.46829 1.84580 1.77962 1.29345 1.38650 1.20028 0.86103 0.84067 0.79974 1.90697 1.65818 1.30701 1.56907 1.47994 1.17398 1.06474 1.59300 1.22681 0.98050 0.82628 0.98330 1.21174 0.86781 0.96314 0.91994 0.96083 1.21679 1.00768 0.94422 1.01554 1.44244 1.12760 1.02047 1.72784 1.19307 1.24385 0.90144 1.04025 0.90894 1.25943 1.01618 0.98780 0.96884 1.70030 1.45289 1.27136 1.14544 0.85569 0.78167 0.81065 0.76883 1.20445 1.23058 1.20624 1.20594 0.97860 0.84523 0.89588 0.90357 1.21772 0.97923 0.97587 1.00561 1.22285 0.82277 1.00924 0.96546 0.92540 0.87212 0.90939 0.70260 0.89647 0.87579 0.92468 0.90112 0.93781 0.94410 0.95221 0.93637 0.95604 0.91107 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 10.81 113.37 1.23 1.47 16 2 O -0.36 -10.40 9.46 -120.92 -1.14 -11.55 16 3 C 0.08 2.13 2.24 29.10 0.07 2.20 16 4 H 0.16 2.78 6.34 -2.38 -0.02 2.76 16 5 C 0.48 11.28 7.55 71.23 0.54 11.81 16 6 O -0.52 -15.59 17.27 28.36 0.49 -15.10 16 7 O -0.49 -7.76 10.61 -51.46 -0.55 -8.30 16 8 C 0.51 17.54 6.98 87.66 0.61 18.15 16 9 O -0.56 -24.27 15.97 15.63 0.25 -24.02 16 10 N -0.58 -19.17 2.60 -817.16 -2.12 -21.30 16 11 C 0.11 2.88 4.22 86.56 0.37 3.24 16 12 C 0.14 4.90 3.23 45.18 0.15 5.04 16 13 H 0.02 0.78 7.38 -2.39 -0.02 0.76 16 14 C -0.13 -3.66 8.03 71.98 0.58 -3.08 16 15 N -0.59 -25.99 2.67 -649.91 -1.74 -27.73 16 16 C -0.25 -11.97 8.24 84.03 0.69 -11.27 16 17 H 0.07 3.37 6.59 -2.91 -0.02 3.35 16 18 C -0.04 -1.85 5.26 84.86 0.45 -1.41 16 19 N -0.92 -50.43 9.67 21.65 0.21 -50.22 16 20 Si 0.95 41.95 29.56 68.60 2.03 43.97 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 C 0.18 8.12 2.32 45.02 0.10 8.23 16 25 H 0.08 4.08 6.11 -2.39 -0.01 4.07 16 26 C -0.12 -5.37 8.93 71.98 0.64 -4.73 16 27 C 0.10 4.00 5.97 86.41 0.52 4.52 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 31 H 0.43 2.98 9.10 -74.06 -0.67 2.31 16 32 H 0.09 2.24 7.91 -2.39 -0.02 2.22 16 33 H 0.11 2.07 4.77 -2.39 -0.01 2.06 16 34 H 0.06 1.62 7.60 -2.39 -0.02 1.60 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.04 1.50 7.48 -2.39 -0.02 1.49 16 37 H 0.25 13.42 8.32 -92.71 -0.77 12.65 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.04 2.29 7.07 -2.39 -0.02 2.27 16 40 H 0.02 1.08 7.00 -2.39 -0.02 1.07 16 41 H 0.07 2.88 6.96 -2.39 -0.02 2.87 16 42 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -71.19 334.33 3.73 -67.46 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.38 Total: 12.60 kcal Atomic # 6 Polarization: 28.25 SS G_CDS: 5.93 Total: 34.18 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -3.65 Total: -99.25 kcal Atomic # 8 Polarization: -58.02 SS G_CDS: -0.95 Total: -58.97 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -71.19 3.73 -67.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593902162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.427 kcal (2) G-P(sol) polarization free energy of solvation -71.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds