Wall clock time and date at job start Tue Mar 31 2020 04:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36934 * 119.99664 * 2 1 4 4 H 1.08001 * 120.00193 * 321.95671 * 3 2 1 5 5 C 1.38810 * 120.00371 * 141.95844 * 3 2 1 6 6 N 1.31621 * 120.00201 * 157.13015 * 5 3 2 7 7 Si 1.86798 * 119.99791 * 337.13583 * 5 3 2 8 8 H 1.48504 * 109.47383 * 95.67600 * 7 5 3 9 9 H 1.48497 * 109.47470 * 215.67117 * 7 5 3 10 10 H 1.48499 * 109.47392 * 335.67727 * 7 5 3 11 11 C 1.46497 * 120.00035 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47233 * 89.99838 * 11 2 1 13 13 O 1.42901 * 109.47075 * 64.99710 * 12 11 2 14 14 C 1.42905 * 114.00232 * 180.02562 * 13 12 11 15 15 C 1.52990 * 109.47316 * 180.02562 * 14 13 12 16 16 N 1.46501 * 109.47476 * 64.99881 * 15 14 13 17 17 C 1.34777 * 120.00263 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99796 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00205 * 179.97438 * 17 16 15 20 20 H 1.09000 * 115.55868 * 34.31516 * 19 17 16 21 21 C 1.52998 * 117.49690 * 248.62301 * 19 17 16 22 22 C 1.52994 * 117.49910 * 179.97438 * 19 17 16 23 23 H 1.09006 * 117.49718 * 0.02562 * 22 19 17 24 24 C 1.50699 * 117.50145 * 214.98015 * 22 19 17 25 25 O 1.20822 * 119.99938 * 359.97438 * 24 22 19 26 26 O 1.34228 * 120.00196 * 179.97438 * 24 22 19 27 27 H 1.09011 * 109.46783 * 265.68462 * 1 2 3 28 28 H 1.08998 * 109.47580 * 25.68589 * 1 2 3 29 29 H 1.09001 * 109.47231 * 145.69535 * 1 2 3 30 30 H 0.97001 * 120.00053 * 179.97438 * 6 5 3 31 31 H 1.08998 * 109.47151 * 329.99704 * 11 2 1 32 32 H 1.09001 * 109.46680 * 209.99603 * 11 2 1 33 33 H 1.09001 * 109.47165 * 304.99963 * 12 11 2 34 34 H 1.08997 * 109.47155 * 184.99490 * 12 11 2 35 35 H 1.08995 * 109.46917 * 59.99512 * 14 13 12 36 36 H 1.08997 * 109.46720 * 300.00085 * 14 13 12 37 37 H 1.09001 * 109.47537 * 304.99566 * 15 14 13 38 38 H 1.09005 * 109.47287 * 184.99881 * 15 14 13 39 39 H 0.97004 * 119.99760 * 0.02562 * 16 15 14 40 40 H 1.08997 * 117.49289 * 145.02432 * 21 19 17 41 41 H 1.08990 * 117.52151 * 359.97438 * 21 19 17 42 42 H 0.96693 * 117.00481 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7817 2.0219 -0.5764 5 6 3.3165 1.3138 0.7408 6 7 4.2027 2.2324 0.4195 7 14 3.6292 0.1820 2.1935 8 1 4.4686 -0.9629 1.7575 9 1 4.3339 0.9329 3.2635 10 1 2.3340 -0.3241 2.7147 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 8 3.3208 -0.7715 -2.0817 14 6 3.6239 -1.0918 -3.4411 15 6 4.5558 -0.0258 -4.0206 16 7 5.8404 -0.0656 -3.3174 17 6 6.8238 0.7895 -3.6613 18 8 6.6453 1.5917 -4.5533 19 6 8.1450 0.7490 -2.9376 20 1 8.4748 -0.2388 -2.6158 21 6 8.4960 1.9379 -2.0408 22 6 9.2209 1.7449 -3.3749 23 1 8.9730 2.4298 -4.1859 24 6 10.6553 1.2853 -3.3273 25 8 10.9193 0.1671 -2.9533 26 8 11.6397 2.1181 -3.7003 27 1 -0.3633 -0.0773 1.0249 28 1 -0.3634 0.9261 -0.4454 29 1 -0.3634 -0.8489 -0.5792 30 1 5.0180 2.3219 0.9374 31 1 1.6085 -2.0286 0.5130 32 1 3.1499 -1.1385 0.5133 33 1 1.5061 -1.7541 -1.9823 34 1 2.9181 -2.6952 -1.4449 35 1 2.7017 -1.1230 -4.0212 36 1 4.1136 -2.0645 -3.4846 37 1 4.1040 0.9583 -3.8964 38 1 4.7160 -0.2208 -5.0810 39 1 5.9835 -0.7079 -2.6047 40 1 9.0569 1.7322 -1.1291 41 1 7.7719 2.7497 -1.9744 42 1 12.5437 1.7783 -3.6530 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598376531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:21 Heat of formation + Delta-G solvation = -142.789092 kcal Electronic energy + Delta-G solvation = -24856.287649 eV Core-core repulsion = 21030.601875 eV Total energy + Delta-G solvation = -3825.685774 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.74999 -40.68489 -39.10747 -37.72921 -37.26238 -36.75431 -35.61164 -33.61148 -31.36497 -29.71101 -27.92180 -27.01532 -25.24411 -24.54547 -23.14816 -22.43605 -21.99747 -21.03755 -19.50994 -18.70730 -18.50713 -17.84495 -17.53684 -17.29496 -16.96847 -16.70322 -16.30978 -16.01216 -15.59572 -15.29948 -15.12238 -14.93566 -14.70342 -14.41761 -13.90213 -13.72706 -13.64662 -13.35800 -13.21821 -12.90016 -12.66409 -12.66249 -12.41959 -12.30308 -12.10864 -11.96674 -11.83558 -11.70682 -11.67854 -11.41811 -11.02029 -10.51058 -10.28898 -10.10328 -8.63920 -8.02970 -5.39973 0.90734 1.34494 1.39612 1.46306 1.55756 1.71632 2.32790 2.52671 2.69145 2.92455 3.18041 3.40243 3.57785 3.59678 3.74648 4.00478 4.05253 4.24614 4.27096 4.37933 4.49842 4.55201 4.57791 4.60997 4.62023 4.77075 4.78393 4.82075 4.87056 4.94811 4.98321 5.14720 5.19075 5.41548 5.50471 6.06742 6.28541 6.47813 6.59390 6.93193 7.12823 7.15511 7.77367 8.17615 9.16934 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.016951 B = 0.003923 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.409225 B = 7136.225507 C = 8010.170327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.622 5.622 3 C -0.243 4.243 4 H 0.026 0.974 5 C -0.005 4.005 6 N -0.939 5.939 7 Si 0.936 3.064 8 H -0.272 1.272 9 H -0.314 1.314 10 H -0.266 1.266 11 C 0.124 3.876 12 C 0.051 3.949 13 O -0.385 6.385 14 C 0.049 3.951 15 C 0.129 3.871 16 N -0.703 5.703 17 C 0.541 3.459 18 O -0.582 6.582 19 C -0.158 4.158 20 H 0.151 0.849 21 C -0.105 4.105 22 C -0.136 4.136 23 H 0.145 0.855 24 C 0.525 3.475 25 O -0.541 6.541 26 O -0.502 6.502 27 H 0.014 0.986 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.258 0.742 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.096 0.904 39 H 0.412 0.588 40 H 0.130 0.870 41 H 0.108 0.892 42 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.966 -9.253 -7.251 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.347 5.347 3 C -0.373 4.373 4 H 0.044 0.956 5 C -0.201 4.201 6 N -0.583 5.583 7 Si 0.766 3.234 8 H -0.199 1.199 9 H -0.243 1.243 10 H -0.190 1.190 11 C -0.001 4.001 12 C -0.028 4.028 13 O -0.304 6.304 14 C -0.028 4.028 15 C 0.005 3.995 16 N -0.353 5.353 17 C 0.328 3.672 18 O -0.463 6.463 19 C -0.179 4.179 20 H 0.168 0.832 21 C -0.143 4.143 22 C -0.155 4.155 23 H 0.163 0.837 24 C 0.369 3.631 25 O -0.432 6.432 26 O -0.316 6.316 27 H 0.032 0.968 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.114 0.886 39 H 0.248 0.752 40 H 0.148 0.852 41 H 0.127 0.873 42 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 7.651 -8.619 -7.677 13.847 hybrid contribution 0.734 -0.623 0.870 1.298 sum 8.385 -9.242 -6.807 14.215 Atomic orbital electron populations 1.21166 0.82633 1.00041 0.98252 1.44102 1.02015 1.01616 1.86958 1.18384 1.06062 0.90992 1.21901 0.95626 1.25838 0.96553 0.97971 0.99776 1.70040 1.09077 1.38753 1.40436 0.85979 0.77833 0.78690 0.80884 1.19897 1.24324 1.19030 1.21463 0.96052 0.87976 0.94565 1.23184 0.93061 0.91440 0.95120 1.88284 1.67516 1.50264 1.24385 1.22769 0.98269 0.97184 0.84529 1.21356 0.82489 0.99343 0.96307 1.45711 1.13324 1.37558 1.38720 1.19768 0.85260 0.79755 0.82402 1.90656 1.82878 1.39439 1.33290 1.22235 0.92293 0.99235 1.04177 0.83173 1.23144 1.00534 0.97828 0.92788 1.21594 0.86272 1.04135 1.03548 0.83683 1.21978 0.87438 0.81898 0.71790 1.90715 1.84860 1.22232 1.45344 1.84464 1.21039 1.46983 1.79100 0.96791 0.94712 0.92200 0.93337 0.89586 0.94496 0.93172 0.91662 0.90930 0.90657 0.94103 0.88574 0.75229 0.85174 0.87341 0.70416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.64 10.70 127.77 1.37 6.01 16 2 N -0.62 -28.64 2.45 -726.94 -1.78 -30.42 16 3 C -0.24 -13.83 9.38 84.03 0.79 -13.04 16 4 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 5 C 0.00 -0.27 5.29 84.86 0.45 0.18 16 6 N -0.94 -57.84 13.97 21.65 0.30 -57.54 16 7 Si 0.94 45.50 25.10 68.60 1.72 47.22 16 8 H -0.27 -12.37 6.68 99.48 0.66 -11.71 16 9 H -0.31 -15.65 7.11 99.48 0.71 -14.95 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 C 0.12 4.85 4.96 86.38 0.43 5.28 16 12 C 0.05 1.65 6.28 71.98 0.45 2.10 16 13 O -0.39 -14.78 9.76 -148.98 -1.45 -16.23 16 14 C 0.05 1.37 6.07 71.98 0.44 1.81 16 15 C 0.13 4.03 6.06 86.38 0.52 4.55 16 16 N -0.70 -22.28 5.50 -463.06 -2.55 -24.83 16 17 C 0.54 18.25 7.61 87.66 0.67 18.92 16 18 O -0.58 -23.25 16.26 -3.04 -0.05 -23.30 16 19 C -0.16 -4.36 5.70 -11.54 -0.07 -4.42 16 20 H 0.15 3.67 7.67 -2.39 -0.02 3.66 16 21 C -0.11 -2.75 9.94 30.61 0.30 -2.44 16 22 C -0.14 -3.38 5.81 -11.53 -0.07 -3.45 16 23 H 0.15 3.74 7.67 -2.38 -0.02 3.73 16 24 C 0.53 11.89 8.11 71.24 0.58 12.47 16 25 O -0.54 -14.78 17.02 21.98 0.37 -14.41 16 26 O -0.50 -8.22 13.42 -51.39 -0.69 -8.91 16 27 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.03 1.35 8.00 -2.39 -0.02 1.33 16 29 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 30 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.09 2.75 8.07 -2.39 -0.02 2.73 16 32 H 0.04 1.63 3.38 -2.39 -0.01 1.62 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 39 H 0.41 11.84 8.47 -92.71 -0.79 11.06 16 40 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.43 2.80 9.10 -74.06 -0.67 2.12 16 Total: -1.00 -78.94 360.42 1.29 -77.65 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -0.45 Total: 22.80 kcal Atomic # 6 Polarization: 22.11 SS G_CDS: 5.86 Total: 27.97 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -4.02 Total: -112.79 kcal Atomic # 8 Polarization: -61.03 SS G_CDS: -1.82 Total: -62.85 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.72 Total: 47.22 kcal Total: -78.94 1.29 -77.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598376531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.139 kcal (2) G-P(sol) polarization free energy of solvation -78.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds