Wall clock time and date at job start Tue Mar 31 2020 03:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48852 * 111.13468 * 2 1 4 4 C 1.54379 * 104.63071 * 201.00687 * 3 2 1 5 5 H 1.09000 * 110.32064 * 264.95374 * 4 3 2 6 6 O 1.42899 * 110.32600 * 142.74788 * 4 3 2 7 7 C 1.54259 * 105.06289 * 23.84906 * 4 3 2 8 8 C 1.48557 * 110.99868 * 244.67690 * 2 1 3 9 9 C 1.52999 * 110.41361 * 277.93547 * 8 2 1 10 10 C 1.50697 * 110.41298 * 40.26525 * 8 2 1 11 11 O 1.21288 * 120.00080 * 8.16344 * 10 8 2 12 12 N 1.34775 * 119.99864 * 188.16739 * 10 8 2 13 13 C 1.37100 * 120.00531 * 353.95591 * 12 10 8 14 14 H 1.08003 * 119.99489 * 330.36302 * 13 12 10 15 15 C 1.38944 * 120.00282 * 150.36039 * 13 12 10 16 16 N 1.31412 * 119.99578 * 163.39797 * 15 13 12 17 17 Si 1.86799 * 120.00359 * 343.40726 * 15 13 12 18 18 H 1.48501 * 109.47230 * 93.79289 * 17 15 13 19 19 H 1.48494 * 109.47208 * 213.79580 * 17 15 13 20 20 H 1.48504 * 109.46713 * 333.79403 * 17 15 13 21 21 C 1.46509 * 119.99966 * 173.95895 * 12 10 8 22 22 C 1.52995 * 109.47270 * 89.99730 * 21 12 10 23 23 C 1.50699 * 109.47189 * 180.02562 * 22 21 12 24 24 O 1.20829 * 119.99860 * 359.97438 * 23 22 21 25 25 O 1.34228 * 120.00262 * 179.97438 * 23 22 21 26 26 H 1.08997 * 109.47223 * 150.32738 * 1 2 3 27 27 H 1.08999 * 109.47133 * 270.32951 * 1 2 3 28 28 H 1.08999 * 109.47138 * 30.33001 * 1 2 3 29 29 H 1.08996 * 110.39514 * 82.21251 * 3 2 1 30 30 H 1.09007 * 110.49414 * 319.84244 * 3 2 1 31 31 H 0.96699 * 113.99822 * 64.35850 * 6 4 3 32 32 H 1.08998 * 110.32772 * 241.10799 * 7 4 3 33 33 H 1.09003 * 110.41120 * 118.94050 * 7 4 3 34 34 H 1.09003 * 109.47217 * 189.91452 * 9 8 2 35 35 H 1.08998 * 109.47417 * 309.92030 * 9 8 2 36 36 H 1.09004 * 109.47029 * 69.91498 * 9 8 2 37 37 H 0.97004 * 119.99748 * 179.97438 * 16 15 13 38 38 H 1.08996 * 109.46906 * 329.99608 * 21 12 10 39 39 H 1.09001 * 109.46842 * 210.00182 * 21 12 10 40 40 H 1.08996 * 109.47255 * 60.00092 * 22 21 12 41 41 H 1.09006 * 109.46922 * 300.00307 * 22 21 12 42 42 H 0.96696 * 117.00363 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0057 1.3884 0.0000 4 6 3.4470 1.2493 -0.5355 5 1 4.1524 1.1724 0.2919 6 8 3.7767 2.3627 -1.3683 7 6 3.4442 -0.0543 -1.3601 8 6 2.0013 -0.5932 -1.2536 9 6 2.0078 -2.1204 -1.1607 10 6 1.1836 -0.1432 -2.4367 11 8 0.3369 0.7142 -2.2978 12 7 1.3929 -0.6934 -3.6491 13 6 2.4302 -1.5707 -3.8340 14 1 3.3261 -1.4809 -3.2375 15 6 2.3288 -2.5751 -4.7887 16 7 3.4081 -3.2017 -5.2001 17 14 0.6585 -3.0345 -5.4874 18 1 0.4195 -2.2733 -6.7399 19 1 0.6274 -4.4902 -5.7792 20 1 -0.3993 -2.7052 -4.4985 21 6 0.5121 -0.3540 -4.7696 22 6 1.0725 0.8628 -5.5085 23 6 0.1662 1.2122 -6.6606 24 8 -0.8260 0.5551 -6.8695 25 8 0.4610 2.2535 -7.4547 26 1 -0.3633 -0.8929 -0.5087 27 1 -0.3633 0.0059 1.0276 28 1 -0.3633 0.8870 -0.5189 29 1 2.0135 1.7926 1.0122 30 1 1.4154 2.0257 -0.6585 31 1 3.7936 3.2104 -0.9032 32 1 4.1482 -0.7712 -0.9376 33 1 3.6949 0.1534 -2.4004 34 1 2.5584 -2.5335 -2.0058 35 1 2.4869 -2.4258 -0.2305 36 1 0.9824 -2.4898 -1.1795 37 1 3.3374 -3.9032 -5.8663 38 1 -0.4838 -0.1227 -4.3917 39 1 0.4533 -1.1999 -5.4546 40 1 2.0684 0.6315 -5.8864 41 1 1.1313 1.7086 -4.8233 42 1 -0.1504 2.4391 -8.1805 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598570698.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:38 Heat of formation + Delta-G solvation = -131.492583 kcal Electronic energy + Delta-G solvation = -27102.860148 eV Core-core repulsion = 23277.664227 eV Total energy + Delta-G solvation = -3825.195921 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.47986 -39.91593 -37.72356 -36.09757 -35.72344 -35.01416 -32.40471 -31.99974 -30.43904 -29.75822 -25.54672 -25.34608 -25.05172 -24.11657 -21.46738 -20.77817 -20.60179 -18.68639 -17.98872 -17.51606 -16.92499 -16.44228 -16.15258 -15.50384 -15.28068 -14.90821 -14.48564 -14.29921 -14.20969 -13.48138 -13.29619 -13.21957 -12.92904 -12.68457 -12.44629 -12.28034 -12.08575 -11.73834 -11.52749 -11.45524 -11.35225 -11.30264 -11.00971 -10.80223 -10.67769 -10.56290 -10.34002 -10.24287 -9.90968 -9.71249 -9.69592 -9.35223 -9.01971 -8.08793 -7.66355 -6.57914 -4.15296 2.47543 3.02486 3.17881 3.20061 3.23724 3.53982 4.00216 4.26461 4.28713 4.74585 4.82110 4.99958 5.06972 5.30098 5.38805 5.41661 5.64472 5.72701 5.80462 5.89991 5.92671 5.98223 6.04954 6.15718 6.18740 6.35183 6.39592 6.40413 6.49522 6.51110 6.59760 6.68982 6.72579 7.10752 7.17151 7.23277 7.42594 7.87883 7.91144 8.08618 8.13066 8.77809 9.17742 9.49317 10.50469 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.013395 B = 0.007154 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.878133 B = 3913.197771 C = 4772.736982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.487 5.487 3 C -0.003 4.003 4 C 0.097 3.903 5 H 0.063 0.937 6 O -0.560 6.560 7 C -0.103 4.103 8 C 0.094 3.906 9 C -0.139 4.139 10 C 0.468 3.532 11 O -0.594 6.594 12 N -0.455 5.455 13 C -0.346 4.346 14 H 0.124 0.876 15 C 0.063 3.937 16 N -0.856 5.856 17 Si 0.883 3.117 18 H -0.272 1.272 19 H -0.291 1.291 20 H -0.266 1.266 21 C 0.117 3.883 22 C -0.124 4.124 23 C 0.484 3.516 24 O -0.521 6.521 25 O -0.519 6.519 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.371 0.629 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.277 0.723 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.510 7.169 4.421 8.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.211 5.211 3 C -0.132 4.132 4 C 0.038 3.962 5 H 0.081 0.919 6 O -0.364 6.364 7 C -0.141 4.141 8 C 0.001 3.999 9 C -0.196 4.196 10 C 0.257 3.743 11 O -0.480 6.480 12 N -0.175 5.175 13 C -0.472 4.472 14 H 0.141 0.859 15 C -0.144 4.144 16 N -0.491 5.491 17 Si 0.714 3.286 18 H -0.199 1.199 19 H -0.219 1.219 20 H -0.191 1.191 21 C -0.007 4.007 22 C -0.162 4.162 23 C 0.327 3.673 24 O -0.409 6.409 25 O -0.330 6.330 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.217 0.783 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -0.631 6.367 4.662 7.917 hybrid contribution -1.617 0.597 -1.325 2.174 sum -2.248 6.965 3.337 8.044 Atomic orbital electron populations 1.22655 0.87727 1.03321 0.99792 1.65793 1.09310 1.14013 1.31966 1.23969 0.96226 0.92261 1.00740 1.22590 0.94154 0.87185 0.92288 0.91946 1.86634 1.92722 1.17585 1.39447 1.22370 0.95165 0.94122 1.02477 1.21843 0.93650 0.97319 0.87048 1.22034 1.02557 0.91337 1.03696 1.20963 0.84930 0.84169 0.84233 1.90485 1.37903 1.35130 1.84463 1.43824 1.27928 1.40216 1.05524 1.19357 0.95494 1.08759 1.23586 0.85875 1.25265 0.97128 0.95718 0.96333 1.69679 1.27631 1.23461 1.28290 0.86847 0.84755 0.76894 0.80109 1.19949 1.21894 1.19119 1.21437 0.94902 0.94799 0.89531 1.21754 0.99729 1.01547 0.93193 1.23731 0.84811 0.76357 0.82426 1.90694 1.28244 1.50798 1.71194 1.84583 1.56115 1.49175 1.43127 0.92541 0.93339 0.91201 0.90927 0.91298 0.78320 0.89675 0.88511 0.87089 0.92790 0.93671 0.91212 0.90168 0.91546 0.86632 0.87197 0.73881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 8.52 60.06 0.51 0.75 16 2 N -0.49 -8.59 5.34 -223.83 -1.20 -9.78 16 3 C 0.00 -0.05 5.85 -2.02 -0.01 -0.06 16 4 C 0.10 1.49 4.42 -25.35 -0.11 1.38 16 5 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 6 O -0.56 -8.58 13.26 -35.23 -0.47 -9.05 16 7 C -0.10 -1.84 4.78 -25.35 -0.12 -1.96 16 8 C 0.09 1.80 0.36 -131.11 -0.05 1.76 16 9 C -0.14 -2.62 8.00 37.16 0.30 -2.33 16 10 C 0.47 10.27 5.58 -10.99 -0.06 10.20 16 11 O -0.59 -13.69 11.66 5.55 0.06 -13.63 16 12 N -0.46 -10.34 2.35 -114.81 -0.27 -10.61 16 13 C -0.35 -8.19 6.57 -14.93 -0.10 -8.28 16 14 H 0.12 2.96 4.69 -52.48 -0.25 2.72 16 15 C 0.06 1.57 5.41 -17.47 -0.09 1.47 16 16 N -0.86 -22.11 13.96 55.50 0.77 -21.33 16 17 Si 0.88 20.67 24.58 -169.99 -4.18 16.49 16 18 H -0.27 -6.44 6.82 56.52 0.39 -6.05 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.35 6.84 56.52 0.39 -5.96 16 21 C 0.12 2.59 3.29 -4.04 -0.01 2.58 16 22 C -0.12 -2.37 6.13 -27.89 -0.17 -2.54 16 23 C 0.48 8.70 8.33 36.01 0.30 9.00 16 24 O -0.52 -10.78 16.74 -18.75 -0.31 -11.09 16 25 O -0.52 -7.27 13.42 -39.25 -0.53 -7.79 16 26 H 0.06 1.07 6.79 -51.93 -0.35 0.72 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.35 5.49 -51.93 -0.29 1.06 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.25 6.50 -51.93 -0.34 0.91 16 31 H 0.37 3.79 9.12 45.56 0.42 4.21 16 32 H 0.08 1.38 7.86 -51.93 -0.41 0.98 16 33 H 0.10 1.96 6.29 -51.93 -0.33 1.64 16 34 H 0.11 2.30 4.91 -51.93 -0.26 2.04 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.87 7.50 -51.93 -0.39 0.48 16 37 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 38 H 0.08 1.84 7.47 -51.93 -0.39 1.45 16 39 H 0.07 1.56 1.69 -51.93 -0.09 1.48 16 40 H 0.12 2.19 8.14 -51.93 -0.42 1.77 16 41 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 42 H 0.40 3.65 9.10 45.56 0.41 4.07 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -30.16 323.89 -4.80 -34.96 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -3.95 Total: 14.99 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 0.38 Total: 11.97 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: -0.69 Total: -41.73 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.24 Total: -41.56 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.18 Total: 16.49 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.16 -4.80 -34.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598570698.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.528 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds