Wall clock time and date at job start Tue Mar 31 2020 03:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48852 * 111.13468 * 2 1 4 4 C 1.54379 * 104.63071 * 201.00687 * 3 2 1 5 5 H 1.09000 * 110.32064 * 264.95374 * 4 3 2 6 6 O 1.42899 * 110.32600 * 142.74788 * 4 3 2 7 7 C 1.54259 * 105.06289 * 23.84906 * 4 3 2 8 8 C 1.48557 * 110.99868 * 244.67690 * 2 1 3 9 9 C 1.52999 * 110.41361 * 277.93547 * 8 2 1 10 10 C 1.50697 * 110.41298 * 40.26525 * 8 2 1 11 11 O 1.21288 * 120.00080 * 8.16344 * 10 8 2 12 12 N 1.34775 * 119.99864 * 188.16739 * 10 8 2 13 13 C 1.37100 * 120.00531 * 353.95591 * 12 10 8 14 14 H 1.08003 * 119.99489 * 330.36302 * 13 12 10 15 15 C 1.38944 * 120.00282 * 150.36039 * 13 12 10 16 16 N 1.31412 * 119.99578 * 163.39797 * 15 13 12 17 17 Si 1.86799 * 120.00359 * 343.40726 * 15 13 12 18 18 H 1.48501 * 109.47230 * 93.79289 * 17 15 13 19 19 H 1.48494 * 109.47208 * 213.79580 * 17 15 13 20 20 H 1.48504 * 109.46713 * 333.79403 * 17 15 13 21 21 C 1.46509 * 119.99966 * 173.95895 * 12 10 8 22 22 C 1.52995 * 109.47270 * 89.99730 * 21 12 10 23 23 C 1.50699 * 109.47189 * 180.02562 * 22 21 12 24 24 O 1.20829 * 119.99860 * 359.97438 * 23 22 21 25 25 O 1.34228 * 120.00262 * 179.97438 * 23 22 21 26 26 H 1.08997 * 109.47223 * 150.32738 * 1 2 3 27 27 H 1.08999 * 109.47133 * 270.32951 * 1 2 3 28 28 H 1.08999 * 109.47138 * 30.33001 * 1 2 3 29 29 H 1.08996 * 110.39514 * 82.21251 * 3 2 1 30 30 H 1.09007 * 110.49414 * 319.84244 * 3 2 1 31 31 H 0.96699 * 113.99822 * 64.35850 * 6 4 3 32 32 H 1.08998 * 110.32772 * 241.10799 * 7 4 3 33 33 H 1.09003 * 110.41120 * 118.94050 * 7 4 3 34 34 H 1.09003 * 109.47217 * 189.91452 * 9 8 2 35 35 H 1.08998 * 109.47417 * 309.92030 * 9 8 2 36 36 H 1.09004 * 109.47029 * 69.91498 * 9 8 2 37 37 H 0.97004 * 119.99748 * 179.97438 * 16 15 13 38 38 H 1.08996 * 109.46906 * 329.99608 * 21 12 10 39 39 H 1.09001 * 109.46842 * 210.00182 * 21 12 10 40 40 H 1.08996 * 109.47255 * 60.00092 * 22 21 12 41 41 H 1.09006 * 109.46922 * 300.00307 * 22 21 12 42 42 H 0.96696 * 117.00363 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0057 1.3884 0.0000 4 6 3.4470 1.2493 -0.5355 5 1 4.1524 1.1724 0.2919 6 8 3.7767 2.3627 -1.3683 7 6 3.4442 -0.0543 -1.3601 8 6 2.0013 -0.5932 -1.2536 9 6 2.0078 -2.1204 -1.1607 10 6 1.1836 -0.1432 -2.4367 11 8 0.3369 0.7142 -2.2978 12 7 1.3929 -0.6934 -3.6491 13 6 2.4302 -1.5707 -3.8340 14 1 3.3261 -1.4809 -3.2375 15 6 2.3288 -2.5751 -4.7887 16 7 3.4081 -3.2017 -5.2001 17 14 0.6585 -3.0345 -5.4874 18 1 0.4195 -2.2733 -6.7399 19 1 0.6274 -4.4902 -5.7792 20 1 -0.3993 -2.7052 -4.4985 21 6 0.5121 -0.3540 -4.7696 22 6 1.0725 0.8628 -5.5085 23 6 0.1662 1.2122 -6.6606 24 8 -0.8260 0.5551 -6.8695 25 8 0.4610 2.2535 -7.4547 26 1 -0.3633 -0.8929 -0.5087 27 1 -0.3633 0.0059 1.0276 28 1 -0.3633 0.8870 -0.5189 29 1 2.0135 1.7926 1.0122 30 1 1.4154 2.0257 -0.6585 31 1 3.7936 3.2104 -0.9032 32 1 4.1482 -0.7712 -0.9376 33 1 3.6949 0.1534 -2.4004 34 1 2.5584 -2.5335 -2.0058 35 1 2.4869 -2.4258 -0.2305 36 1 0.9824 -2.4898 -1.1795 37 1 3.3374 -3.9032 -5.8663 38 1 -0.4838 -0.1227 -4.3917 39 1 0.4533 -1.1999 -5.4546 40 1 2.0684 0.6315 -5.8864 41 1 1.1313 1.7086 -4.8233 42 1 -0.1504 2.4391 -8.1805 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598570698.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:37 Heat of formation + Delta-G solvation = -157.635930 kcal Electronic energy + Delta-G solvation = -27103.993809 eV Core-core repulsion = 23277.664227 eV Total energy + Delta-G solvation = -3826.329582 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.06386 -41.34434 -39.22782 -37.52223 -37.14932 -36.58480 -34.20953 -33.60638 -31.94763 -31.17751 -27.18017 -26.93679 -26.68175 -25.58229 -22.97781 -22.29332 -21.93641 -20.43993 -19.47388 -18.92500 -18.34738 -18.15077 -17.68479 -17.02477 -16.87414 -16.37220 -16.05233 -15.93618 -15.56597 -15.07862 -14.86186 -14.77827 -14.45703 -14.31724 -14.02356 -13.77442 -13.67046 -13.27233 -13.17352 -12.97910 -12.87197 -12.70748 -12.66085 -12.43026 -12.29092 -12.00759 -11.85031 -11.66860 -11.57892 -11.51607 -11.10119 -10.88894 -10.72020 -9.92852 -9.22072 -8.51073 -6.06341 1.03129 1.13295 1.27956 1.32152 1.70058 1.89238 2.09545 2.63527 2.93009 2.98347 3.49357 3.66109 3.66967 3.75141 3.77306 4.00546 4.16472 4.20384 4.42665 4.46914 4.48032 4.52066 4.53913 4.74009 4.75262 4.84585 4.95736 5.03199 5.03651 5.12234 5.13449 5.22498 5.32181 5.44868 5.59947 5.79710 5.98205 6.04754 6.22743 6.86518 6.90289 6.97299 7.34251 7.68680 8.60632 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.013395 B = 0.007154 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.878133 B = 3913.197771 C = 4772.736982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.481 5.481 3 C -0.001 4.001 4 C 0.104 3.896 5 H 0.096 0.904 6 O -0.579 6.579 7 C -0.105 4.105 8 C 0.091 3.909 9 C -0.131 4.131 10 C 0.465 3.535 11 O -0.606 6.606 12 N -0.467 5.467 13 C -0.326 4.326 14 H 0.121 0.879 15 C 0.038 3.962 16 N -0.885 5.885 17 Si 0.917 3.083 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.114 3.886 22 C -0.118 4.118 23 C 0.495 3.505 24 O -0.552 6.552 25 O -0.503 6.503 26 H 0.036 0.964 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.106 0.894 30 H 0.044 0.956 31 H 0.393 0.607 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.032 0.968 37 H 0.280 0.720 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 8.442 5.731 10.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.204 5.204 3 C -0.129 4.129 4 C 0.045 3.955 5 H 0.114 0.886 6 O -0.387 6.387 7 C -0.144 4.144 8 C -0.002 4.002 9 C -0.188 4.188 10 C 0.255 3.745 11 O -0.492 6.492 12 N -0.187 5.187 13 C -0.453 4.453 14 H 0.138 0.862 15 C -0.166 4.166 16 N -0.522 5.522 17 Si 0.749 3.251 18 H -0.206 1.206 19 H -0.217 1.217 20 H -0.205 1.205 21 C -0.009 4.009 22 C -0.157 4.157 23 C 0.339 3.661 24 O -0.443 6.443 25 O -0.316 6.316 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.124 0.876 30 H 0.062 0.938 31 H 0.243 0.757 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -0.047 7.685 5.962 9.726 hybrid contribution -1.850 0.347 -1.690 2.529 sum -1.896 8.032 4.272 9.293 Atomic orbital electron populations 1.22582 0.87901 1.01403 1.01039 1.65857 1.09026 1.15257 1.30302 1.24045 0.96039 0.90680 1.02155 1.22583 0.94489 0.86041 0.92381 0.88577 1.86581 1.92640 1.18908 1.40579 1.22372 0.94248 0.96251 1.01497 1.21905 0.94331 0.97490 0.86492 1.21916 1.01683 0.91189 1.04034 1.21618 0.84777 0.83436 0.84686 1.90486 1.38462 1.35521 1.84761 1.43947 1.27981 1.40567 1.06217 1.19328 0.95350 1.08098 1.22513 0.86208 1.25504 0.97941 0.96155 0.97034 1.69701 1.28307 1.24626 1.29607 0.86317 0.83084 0.76569 0.79145 1.20596 1.21666 1.20533 1.21361 0.94482 0.95633 0.89459 1.21566 0.99888 1.00371 0.93828 1.23311 0.83813 0.76679 0.82334 1.90693 1.29418 1.52132 1.72067 1.84503 1.56557 1.47093 1.43471 0.94452 0.90458 0.93087 0.87598 0.93756 0.75717 0.88042 0.91322 0.89126 0.90347 0.94834 0.91015 0.91526 0.92796 0.86393 0.86762 0.70898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 8.52 127.69 1.09 1.74 16 2 N -0.48 -15.91 5.34 -862.07 -4.60 -20.52 16 3 C 0.00 -0.02 5.85 86.39 0.51 0.48 16 4 C 0.10 2.89 4.42 31.49 0.14 3.03 16 5 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 6 O -0.58 -16.35 13.26 -148.98 -1.98 -18.33 16 7 C -0.11 -3.59 4.78 31.49 0.15 -3.44 16 8 C 0.09 3.39 0.36 2.93 0.00 3.39 16 9 C -0.13 -4.84 8.00 71.98 0.58 -4.26 16 10 C 0.47 20.42 5.58 87.66 0.49 20.91 16 11 O -0.61 -28.06 11.66 -3.05 -0.04 -28.09 16 12 N -0.47 -21.43 2.35 -635.54 -1.50 -22.93 16 13 C -0.33 -15.60 6.57 84.04 0.55 -15.04 16 14 H 0.12 5.81 4.69 -2.91 -0.01 5.80 16 15 C 0.04 1.92 5.41 84.92 0.46 2.38 16 16 N -0.88 -46.15 13.96 21.66 0.30 -45.84 16 17 Si 0.92 43.27 24.58 68.60 1.69 44.96 16 18 H -0.28 -13.25 6.82 99.48 0.68 -12.58 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.28 -13.60 6.84 99.48 0.68 -12.92 16 21 C 0.11 5.14 3.29 86.38 0.28 5.42 16 22 C -0.12 -4.50 6.13 29.85 0.18 -4.32 16 23 C 0.50 17.34 8.33 71.24 0.59 17.93 16 24 O -0.55 -22.66 16.74 21.96 0.37 -22.29 16 25 O -0.50 -12.96 13.42 -51.40 -0.69 -13.65 16 26 H 0.04 1.39 6.79 -2.39 -0.02 1.38 16 27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.05 1.94 5.49 -2.39 -0.01 1.92 16 29 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.04 1.53 6.50 -2.38 -0.02 1.51 16 31 H 0.39 6.88 9.12 -74.06 -0.68 6.21 16 32 H 0.10 3.07 7.86 -2.39 -0.02 3.05 16 33 H 0.07 2.75 6.29 -2.39 -0.01 2.73 16 34 H 0.09 3.75 4.91 -2.39 -0.01 3.74 16 35 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.03 1.28 7.50 -2.39 -0.02 1.26 16 37 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 38 H 0.07 3.14 7.47 -2.39 -0.02 3.12 16 39 H 0.05 2.58 1.69 -2.39 0.00 2.58 16 40 H 0.12 4.44 8.14 -2.39 -0.02 4.42 16 41 H 0.11 4.24 8.14 -2.38 -0.02 4.22 16 42 H 0.43 6.58 9.10 -74.06 -0.67 5.91 16 Total: -1.00 -64.90 323.89 -1.74 -66.64 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -0.31 Total: 31.83 kcal Atomic # 6 Polarization: 23.20 SS G_CDS: 5.02 Total: 28.23 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -5.80 Total: -89.29 kcal Atomic # 8 Polarization: -80.03 SS G_CDS: -2.33 Total: -82.36 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.69 Total: 44.96 kcal Total: -64.90 -1.74 -66.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598570698.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.999 kcal (2) G-P(sol) polarization free energy of solvation -64.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds