Wall clock time and date at job start Tue Mar 31 2020 04:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00526 * 2 1 4 4 H 1.09000 * 109.57430 * 330.15984 * 3 2 1 5 5 C 1.53124 * 109.52158 * 90.31650 * 3 2 1 6 6 C 1.53035 * 109.27724 * 177.56296 * 5 3 2 7 7 N 1.46853 * 109.51095 * 300.81518 * 6 5 3 8 8 C 1.46909 * 110.98627 * 185.85259 * 7 6 5 9 9 C 1.50700 * 109.46995 * 300.01234 * 8 7 6 10 10 O 1.21282 * 119.99855 * 354.85625 * 9 8 7 11 11 N 1.34771 * 119.99701 * 174.85302 * 9 8 7 12 12 C 1.46503 * 120.00030 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47306 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99853 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99923 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99782 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99892 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46815 * 89.99869 * 17 15 13 19 19 H 1.48493 * 109.46956 * 209.99910 * 17 15 13 20 20 H 1.48500 * 109.46889 * 330.00113 * 17 15 13 21 21 C 1.46841 * 111.19673 * 61.76326 * 7 6 5 22 22 H 1.08996 * 109.46392 * 58.24899 * 21 7 6 23 23 C 1.50710 * 109.46110 * 178.22770 * 21 7 6 24 24 O 1.20825 * 119.99633 * 29.50856 * 23 21 7 25 25 O 1.34226 * 119.99726 * 209.51012 * 23 21 7 26 26 C 1.53035 * 109.51592 * 298.23438 * 21 7 6 27 27 H 1.09000 * 109.46829 * 59.99545 * 1 2 3 28 28 H 1.08996 * 109.47563 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47035 * 300.00020 * 1 2 3 30 30 H 1.08996 * 109.49952 * 297.50604 * 5 3 2 31 31 H 1.09002 * 109.49983 * 57.62034 * 5 3 2 32 32 H 1.08995 * 109.46368 * 60.83728 * 6 5 3 33 33 H 1.09001 * 109.45669 * 180.81759 * 6 5 3 34 34 H 1.08999 * 109.47173 * 60.01162 * 8 7 6 35 35 H 1.09000 * 109.46728 * 180.02562 * 8 7 6 36 36 H 0.97002 * 120.00309 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.47264 * 300.00166 * 12 11 9 38 38 H 1.08999 * 109.47260 * 59.99952 * 12 11 9 39 39 H 0.97000 * 119.99237 * 179.97438 * 16 15 13 40 40 H 0.96702 * 116.99748 * 179.97438 * 25 23 21 41 41 H 1.09001 * 109.50534 * 179.12789 * 26 21 7 42 42 H 1.08995 * 109.50556 * 299.20762 * 26 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 2.0014 -0.5110 5 6 2.2257 1.7696 1.4432 6 6 2.9039 3.1415 1.4368 7 7 4.1911 3.0490 0.7360 8 6 4.9335 4.3132 0.8303 9 6 4.1221 5.4199 0.2074 10 8 3.0760 5.1645 -0.3507 11 7 4.5590 6.6932 0.2706 12 6 3.7700 7.7692 -0.3345 13 6 4.4733 9.0857 -0.1268 14 1 5.4137 9.1178 0.4032 15 6 3.9161 10.2493 -0.6135 16 7 2.7711 10.2100 -1.2594 17 14 4.7875 11.8813 -0.3555 18 1 5.7055 12.1377 -1.4943 19 1 3.7827 12.9716 -0.2745 20 1 5.5673 11.8318 0.9074 21 6 4.0054 2.6510 -0.6652 22 1 3.3596 3.3727 -1.1652 23 6 5.3436 2.6105 -1.3573 24 8 6.3419 2.3526 -0.7274 25 8 5.4263 2.8611 -2.6733 26 6 3.3602 1.2644 -0.7216 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.2633 1.8417 1.9497 31 1 2.8596 1.0527 1.9652 32 1 2.2633 3.8608 0.9267 33 1 3.0718 3.4683 2.4630 34 1 5.1221 4.5465 1.8782 35 1 5.8825 4.2174 0.3026 36 1 5.3954 6.8975 0.7173 37 1 3.6585 7.5817 -1.4024 38 1 2.7858 7.8050 0.1327 39 1 2.3790 11.0287 -1.6015 40 1 6.3062 2.8239 -3.0728 41 1 3.2082 0.9758 -1.7617 42 1 4.0121 0.5395 -0.2343 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599125059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:13 Heat of formation + Delta-G solvation = -165.459889 kcal Electronic energy + Delta-G solvation = -25626.581613 eV Core-core repulsion = 21799.912759 eV Total energy + Delta-G solvation = -3826.668854 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.00525 -39.39140 -38.61670 -36.82514 -35.96724 -34.28894 -32.74483 -32.34798 -31.41388 -28.42543 -27.09012 -25.91534 -24.85142 -23.34243 -22.38205 -21.35088 -20.08916 -19.73530 -18.18516 -17.48338 -16.95399 -16.31117 -16.03233 -15.94713 -15.48682 -15.24072 -15.06155 -14.89909 -14.67737 -14.58580 -14.15812 -13.42630 -13.30805 -13.03586 -12.75902 -12.49668 -12.13106 -12.08700 -11.95152 -11.78156 -11.52450 -11.40168 -11.09222 -10.99853 -10.97764 -10.83624 -10.69449 -10.42695 -10.31760 -9.92523 -9.62704 -9.47075 -8.80578 -8.03164 -7.99363 -6.23192 -4.30518 2.14445 2.83916 3.12375 3.20130 3.26528 3.28776 3.61756 3.82044 3.99691 4.31400 4.64774 4.70019 4.93041 5.04004 5.13176 5.18625 5.19887 5.25503 5.31975 5.35088 5.36891 5.45030 5.52556 5.57405 5.62800 5.79073 5.85529 5.90966 6.01200 6.24697 6.46561 6.74971 6.88103 7.05114 7.19377 7.30258 7.41556 7.57477 7.88912 7.92492 8.47992 8.66850 8.93486 9.36221 10.86839 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.019490 B = 0.003595 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.289177 B = 7786.288889 C = 8447.408710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.092 3.908 4 H 0.068 0.932 5 C -0.135 4.135 6 C 0.042 3.958 7 N -0.495 5.495 8 C 0.020 3.980 9 C 0.464 3.536 10 O -0.558 6.558 11 N -0.705 5.705 12 C 0.249 3.751 13 C -0.545 4.545 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.080 3.920 22 H 0.115 0.885 23 C 0.486 3.514 24 O -0.501 6.501 25 O -0.512 6.512 26 C -0.099 4.099 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.392 0.608 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.409 0.591 41 H 0.081 0.919 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.266 -17.592 2.471 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.034 3.966 4 H 0.086 0.914 5 C -0.173 4.173 6 C -0.085 4.085 7 N -0.219 5.219 8 C -0.111 4.111 9 C 0.248 3.752 10 O -0.440 6.440 11 N -0.353 5.353 12 C 0.128 3.872 13 C -0.584 4.584 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.731 3.269 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.029 4.029 22 H 0.132 0.868 23 C 0.327 3.673 24 O -0.388 6.388 25 O -0.323 6.323 26 C -0.137 4.137 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.225 0.775 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.268 0.732 41 H 0.100 0.900 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.350 -18.217 2.554 18.399 hybrid contribution 0.799 1.999 -0.323 2.177 sum 0.449 -16.218 2.231 16.377 Atomic orbital electron populations 1.22785 0.81084 1.02520 1.00199 1.87879 1.19627 1.27730 1.95113 1.22097 0.94157 0.84517 0.95806 0.91400 1.22073 1.00909 0.97334 0.96976 1.22339 0.89643 0.97360 0.99193 1.62232 1.20519 1.28212 1.10954 1.22495 0.98103 0.86843 1.03705 1.21768 0.86984 0.85160 0.81244 1.90536 1.24587 1.83026 1.45808 1.46616 1.25521 1.07300 1.55852 1.19126 0.91306 0.83017 0.93765 1.21221 1.07693 0.91405 1.38045 0.91877 1.24955 0.94903 0.99480 0.94627 1.69972 1.17404 1.28659 1.36210 0.86405 0.79225 0.82565 0.78683 1.20421 1.20958 1.19701 1.21386 0.91377 0.99970 0.90210 0.86768 1.23267 0.91825 0.72115 0.80091 1.90693 1.38350 1.43692 1.66017 1.84578 1.40076 1.82811 1.24877 1.21499 0.95818 0.94683 1.01710 0.93914 0.89770 0.93972 0.91113 0.90281 0.90487 0.90033 0.87333 0.87577 0.77509 0.95516 0.95488 0.92405 0.73227 0.90048 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.38 -4.50 10.35 -35.23 -0.36 -4.86 16 3 C 0.09 1.09 2.68 -26.61 -0.07 1.02 16 4 H 0.07 0.83 7.79 -51.93 -0.40 0.42 16 5 C -0.13 -1.55 5.72 -26.65 -0.15 -1.70 16 6 C 0.04 0.55 5.00 -3.83 -0.02 0.54 16 7 N -0.49 -7.06 4.46 -229.51 -1.02 -8.08 16 8 C 0.02 0.29 5.44 -4.97 -0.03 0.27 16 9 C 0.46 8.66 7.23 -10.99 -0.08 8.58 16 10 O -0.56 -11.88 11.64 5.56 0.06 -11.81 16 11 N -0.71 -14.25 5.55 -61.47 -0.34 -14.59 16 12 C 0.25 6.39 5.43 -5.19 -0.03 6.36 16 13 C -0.55 -14.52 9.28 -34.44 -0.32 -14.83 16 14 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 17 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 C 0.08 1.15 1.95 -68.87 -0.13 1.02 16 22 H 0.11 1.91 5.67 -51.93 -0.29 1.62 16 23 C 0.49 6.99 6.36 36.01 0.23 7.22 16 24 O -0.50 -8.00 16.01 -18.75 -0.30 -8.30 16 25 O -0.51 -6.31 13.42 -39.25 -0.53 -6.83 16 26 C -0.10 -1.23 5.01 -26.65 -0.13 -1.36 16 27 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.34 7.96 -51.93 -0.41 -0.08 16 30 H 0.07 0.72 7.96 -51.93 -0.41 0.30 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.22 5.69 -51.93 -0.30 0.93 16 33 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 34 H 0.11 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.11 1.58 5.88 -51.93 -0.31 1.27 16 36 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.41 3.10 9.10 45.56 0.41 3.52 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -32.80 343.44 -6.73 -39.52 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.39 Total: 9.02 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 0.26 Total: 10.12 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.63 Total: -47.57 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -1.13 Total: -31.81 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.80 -6.73 -39.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599125059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.938 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds