Wall clock time and date at job start Tue Mar 31 2020 04:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00526 * 2 1 4 4 H 1.09000 * 109.57430 * 330.15984 * 3 2 1 5 5 C 1.53124 * 109.52158 * 90.31650 * 3 2 1 6 6 C 1.53035 * 109.27724 * 177.56296 * 5 3 2 7 7 N 1.46853 * 109.51095 * 300.81518 * 6 5 3 8 8 C 1.46909 * 110.98627 * 185.85259 * 7 6 5 9 9 C 1.50700 * 109.46995 * 300.01234 * 8 7 6 10 10 O 1.21282 * 119.99855 * 354.85625 * 9 8 7 11 11 N 1.34771 * 119.99701 * 174.85302 * 9 8 7 12 12 C 1.46503 * 120.00030 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47306 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99853 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99923 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99782 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99892 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46815 * 89.99869 * 17 15 13 19 19 H 1.48493 * 109.46956 * 209.99910 * 17 15 13 20 20 H 1.48500 * 109.46889 * 330.00113 * 17 15 13 21 21 C 1.46841 * 111.19673 * 61.76326 * 7 6 5 22 22 H 1.08996 * 109.46392 * 58.24899 * 21 7 6 23 23 C 1.50710 * 109.46110 * 178.22770 * 21 7 6 24 24 O 1.20825 * 119.99633 * 29.50856 * 23 21 7 25 25 O 1.34226 * 119.99726 * 209.51012 * 23 21 7 26 26 C 1.53035 * 109.51592 * 298.23438 * 21 7 6 27 27 H 1.09000 * 109.46829 * 59.99545 * 1 2 3 28 28 H 1.08996 * 109.47563 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47035 * 300.00020 * 1 2 3 30 30 H 1.08996 * 109.49952 * 297.50604 * 5 3 2 31 31 H 1.09002 * 109.49983 * 57.62034 * 5 3 2 32 32 H 1.08995 * 109.46368 * 60.83728 * 6 5 3 33 33 H 1.09001 * 109.45669 * 180.81759 * 6 5 3 34 34 H 1.08999 * 109.47173 * 60.01162 * 8 7 6 35 35 H 1.09000 * 109.46728 * 180.02562 * 8 7 6 36 36 H 0.97002 * 120.00309 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.47264 * 300.00166 * 12 11 9 38 38 H 1.08999 * 109.47260 * 59.99952 * 12 11 9 39 39 H 0.97000 * 119.99237 * 179.97438 * 16 15 13 40 40 H 0.96702 * 116.99748 * 179.97438 * 25 23 21 41 41 H 1.09001 * 109.50534 * 179.12789 * 26 21 7 42 42 H 1.08995 * 109.50556 * 299.20762 * 26 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 2.0014 -0.5110 5 6 2.2257 1.7696 1.4432 6 6 2.9039 3.1415 1.4368 7 7 4.1911 3.0490 0.7360 8 6 4.9335 4.3132 0.8303 9 6 4.1221 5.4199 0.2074 10 8 3.0760 5.1645 -0.3507 11 7 4.5590 6.6932 0.2706 12 6 3.7700 7.7692 -0.3345 13 6 4.4733 9.0857 -0.1268 14 1 5.4137 9.1178 0.4032 15 6 3.9161 10.2493 -0.6135 16 7 2.7711 10.2100 -1.2594 17 14 4.7875 11.8813 -0.3555 18 1 5.7055 12.1377 -1.4943 19 1 3.7827 12.9716 -0.2745 20 1 5.5673 11.8318 0.9074 21 6 4.0054 2.6510 -0.6652 22 1 3.3596 3.3727 -1.1652 23 6 5.3436 2.6105 -1.3573 24 8 6.3419 2.3526 -0.7274 25 8 5.4263 2.8611 -2.6733 26 6 3.3602 1.2644 -0.7216 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.2633 1.8417 1.9497 31 1 2.8596 1.0527 1.9652 32 1 2.2633 3.8608 0.9267 33 1 3.0718 3.4683 2.4630 34 1 5.1221 4.5465 1.8782 35 1 5.8825 4.2174 0.3026 36 1 5.3954 6.8975 0.7173 37 1 3.6585 7.5817 -1.4024 38 1 2.7858 7.8050 0.1327 39 1 2.3790 11.0287 -1.6015 40 1 6.3062 2.8239 -3.0728 41 1 3.2082 0.9758 -1.7617 42 1 4.0121 0.5395 -0.2343 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599125059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:12 Heat of formation + Delta-G solvation = -192.384988 kcal Electronic energy + Delta-G solvation = -25627.749173 eV Core-core repulsion = 21799.912759 eV Total energy + Delta-G solvation = -3827.836414 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.19116 -40.68745 -39.73028 -37.95020 -37.07303 -36.11172 -34.42412 -33.72637 -32.46312 -30.02733 -28.35065 -27.06141 -25.94069 -24.77511 -23.93617 -22.43059 -21.54949 -21.00021 -19.31516 -19.01507 -18.19565 -17.62916 -17.34655 -17.28657 -16.77365 -16.58218 -16.29317 -16.03137 -15.95198 -15.81492 -15.61712 -14.85466 -14.36633 -14.27176 -14.08999 -13.94967 -13.73406 -13.51192 -12.95260 -12.93215 -12.90311 -12.75627 -12.52873 -12.48173 -12.25924 -12.04364 -11.89537 -11.73581 -11.52595 -11.45504 -11.40227 -10.81679 -10.50580 -9.85385 -9.33776 -8.31302 -6.47734 1.01075 1.42108 1.43638 1.55009 1.60892 1.81871 2.29122 2.52114 2.70262 2.76600 3.03698 3.66240 3.71687 3.84552 3.93874 4.05213 4.19274 4.27011 4.32176 4.37184 4.48018 4.52439 4.54416 4.55316 4.77482 4.84378 4.86651 4.92065 4.99964 5.07665 5.21869 5.23336 5.45484 5.45845 5.62047 5.67154 5.76125 5.82883 6.20904 6.62637 6.81143 6.92413 7.20582 7.39132 8.80336 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.019490 B = 0.003595 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.289177 B = 7786.288889 C = 8447.408710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.094 3.906 4 H 0.059 0.941 5 C -0.127 4.127 6 C 0.043 3.957 7 N -0.490 5.490 8 C 0.032 3.968 9 C 0.464 3.536 10 O -0.585 6.585 11 N -0.704 5.704 12 C 0.268 3.732 13 C -0.558 4.558 14 H 0.082 0.918 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.982 3.018 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.256 1.256 21 C 0.078 3.922 22 H 0.089 0.911 23 C 0.489 3.511 24 O -0.518 6.518 25 O -0.513 6.513 26 C -0.094 4.094 27 H 0.044 0.956 28 H 0.103 0.897 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.111 0.889 36 H 0.408 0.592 37 H -0.013 1.013 38 H -0.010 1.010 39 H 0.269 0.731 40 H 0.429 0.571 41 H 0.088 0.912 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 -18.033 3.657 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C 0.036 3.964 4 H 0.077 0.923 5 C -0.165 4.165 6 C -0.084 4.084 7 N -0.214 5.214 8 C -0.099 4.099 9 C 0.250 3.750 10 O -0.467 6.467 11 N -0.354 5.354 12 C 0.145 3.855 13 C -0.596 4.596 14 H 0.100 0.900 15 C -0.194 4.194 16 N -0.568 5.568 17 Si 0.805 3.195 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.180 1.180 21 C -0.031 4.031 22 H 0.106 0.894 23 C 0.331 3.669 24 O -0.406 6.406 25 O -0.327 6.327 26 C -0.132 4.132 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.157 0.843 35 H 0.129 0.871 36 H 0.243 0.757 37 H 0.005 0.995 38 H 0.008 0.992 39 H 0.077 0.923 40 H 0.292 0.708 41 H 0.107 0.893 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.012 -18.698 3.744 19.096 hybrid contribution 0.315 2.043 -0.758 2.201 sum 1.327 -16.656 2.985 16.973 Atomic orbital electron populations 1.22991 0.79587 1.03965 1.00694 1.87855 1.21277 1.27258 1.95196 1.22022 0.93749 0.84704 0.95958 0.92269 1.22018 1.01528 0.96096 0.96857 1.22361 0.88789 0.97877 0.99401 1.62348 1.20950 1.27255 1.10872 1.22556 0.97218 0.85115 1.05004 1.22616 0.86791 0.85253 0.80301 1.90548 1.26108 1.83423 1.46668 1.46369 1.25823 1.06863 1.56311 1.18524 0.90625 0.84971 0.91360 1.21622 1.08307 0.91672 1.37950 0.90021 1.26022 0.95521 1.03819 0.94035 1.70126 1.19306 1.29886 1.37434 0.85198 0.77948 0.77081 0.79269 1.19709 1.20912 1.17995 1.21372 0.91282 1.00391 0.90077 0.89384 1.23201 0.91455 0.71709 0.80544 1.90683 1.38697 1.44703 1.66519 1.84540 1.41935 1.82223 1.24017 1.21465 0.95993 0.93323 1.02381 0.93732 0.87889 0.93207 0.89640 0.89827 0.93359 0.88466 0.84283 0.87129 0.75695 0.99490 0.99163 0.92251 0.70846 0.89314 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.82 113.37 1.23 1.61 16 2 O -0.40 -8.76 10.35 -148.98 -1.54 -10.31 16 3 C 0.09 2.16 2.68 30.68 0.08 2.24 16 4 H 0.06 1.46 7.79 -2.39 -0.02 1.44 16 5 C -0.13 -2.74 5.72 30.65 0.18 -2.57 16 6 C 0.04 1.10 5.00 86.32 0.43 1.53 16 7 N -0.49 -13.47 4.46 -880.03 -3.92 -17.39 16 8 C 0.03 0.91 5.44 85.56 0.47 1.38 16 9 C 0.46 17.41 7.23 87.66 0.63 18.05 16 10 O -0.58 -25.80 11.64 -3.04 -0.04 -25.83 16 11 N -0.70 -28.65 5.55 -466.79 -2.59 -31.24 16 12 C 0.27 14.29 5.43 85.63 0.46 14.75 16 13 C -0.56 -29.80 9.28 25.60 0.24 -29.57 16 14 H 0.08 3.96 7.60 -2.91 -0.02 3.94 16 15 C 0.01 0.32 5.46 84.66 0.46 0.78 16 16 N -0.93 -55.10 13.29 21.45 0.28 -54.82 16 17 Si 0.98 41.77 29.54 68.60 2.03 43.79 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 21 C 0.08 2.23 1.95 44.20 0.09 2.32 16 22 H 0.09 3.03 5.67 -2.39 -0.01 3.02 16 23 C 0.49 13.69 6.36 71.24 0.45 14.14 16 24 O -0.52 -15.85 16.01 21.97 0.35 -15.50 16 25 O -0.51 -12.25 13.42 -51.38 -0.69 -12.94 16 26 C -0.09 -2.26 5.01 30.65 0.15 -2.11 16 27 H 0.04 0.69 8.09 -2.39 -0.02 0.67 16 28 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 0.72 7.96 -2.39 -0.02 0.70 16 30 H 0.09 1.59 7.96 -2.39 -0.02 1.57 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.56 5.69 -2.39 -0.01 1.54 16 33 H 0.10 2.18 8.12 -2.39 -0.02 2.16 16 34 H 0.14 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.11 3.10 5.88 -2.39 -0.01 3.09 16 36 H 0.41 13.88 8.32 -92.71 -0.77 13.11 16 37 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 40 H 0.43 5.97 9.10 -74.06 -0.67 5.30 16 41 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -71.94 343.44 -1.63 -73.58 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -0.39 Total: 28.10 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: 4.87 Total: 22.56 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -6.23 Total: -103.45 kcal Atomic # 8 Polarization: -62.67 SS G_CDS: -1.92 Total: -64.58 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -71.94 -1.63 -73.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599125059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.809 kcal (2) G-P(sol) polarization free energy of solvation -71.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds