Wall clock time and date at job start Tue Mar 31 2020 04:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99647 * 2 1 4 4 H 1.09007 * 109.52396 * 30.13169 * 3 2 1 5 5 C 1.53114 * 109.52530 * 269.99812 * 3 2 1 6 6 C 1.53035 * 109.27940 * 182.44045 * 5 3 2 7 7 N 1.46854 * 109.52417 * 59.18355 * 6 5 3 8 8 C 1.46898 * 111.00240 * 174.15857 * 7 6 5 9 9 C 1.50698 * 109.46896 * 58.86216 * 8 7 6 10 10 O 1.21282 * 120.00030 * 5.58129 * 9 8 7 11 11 N 1.34780 * 119.99965 * 185.57535 * 9 8 7 12 12 C 1.46497 * 119.99955 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47146 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99671 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00236 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99906 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99782 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47560 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47174 * 119.99958 * 17 15 13 20 20 H 1.48499 * 109.47057 * 239.99704 * 17 15 13 21 21 C 1.46843 * 111.19237 * 298.25772 * 7 6 5 22 22 H 1.08998 * 109.46897 * 301.73351 * 21 7 6 23 23 C 1.50708 * 109.45964 * 181.75502 * 21 7 6 24 24 O 1.20825 * 120.00082 * 332.01624 * 23 21 7 25 25 O 1.34233 * 119.99922 * 152.29034 * 23 21 7 26 26 C 1.53038 * 109.52767 * 61.74116 * 21 7 6 27 27 H 1.08996 * 109.47591 * 59.99963 * 1 2 3 28 28 H 1.09003 * 109.47300 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47642 * 299.99738 * 1 2 3 30 30 H 1.09005 * 109.49974 * 62.50327 * 5 3 2 31 31 H 1.08996 * 109.50565 * 302.38534 * 5 3 2 32 32 H 1.08992 * 109.46531 * 299.16853 * 6 5 3 33 33 H 1.09002 * 109.45262 * 179.18835 * 6 5 3 34 34 H 1.09002 * 109.46690 * 178.86182 * 8 7 6 35 35 H 1.08998 * 109.47111 * 298.86593 * 8 7 6 36 36 H 0.96995 * 119.99905 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.47152 * 300.00193 * 12 11 9 38 38 H 1.09002 * 109.47155 * 60.00179 * 12 11 9 39 39 H 0.96996 * 120.00246 * 180.02562 * 16 15 13 40 40 H 0.96698 * 117.00036 * 180.02562 * 25 23 21 41 41 H 1.09003 * 109.50531 * 60.76178 * 26 21 7 42 42 H 1.09005 * 109.50688 * 180.87682 * 26 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3465 1.9997 0.5157 5 6 2.2183 1.7730 -1.4431 6 6 2.8963 3.1449 -1.4370 7 7 4.1871 3.0513 -0.7429 8 6 4.9288 4.3158 -0.8378 9 6 4.1085 5.4259 -0.2329 10 8 3.0600 5.1722 0.3215 11 7 4.5400 6.7005 -0.3079 12 6 3.7429 7.7795 0.2805 13 6 4.4415 9.0969 0.0621 14 1 5.3848 9.1272 -0.4631 15 6 3.8766 10.2633 0.5325 16 7 2.7277 10.2263 1.1715 17 14 4.7423 11.8961 0.2610 18 1 6.0091 11.6677 -0.4795 19 1 3.8634 12.7973 -0.5268 20 1 5.0428 12.5213 1.5740 21 6 4.0085 2.6498 0.6582 22 1 3.3652 3.3701 1.1634 23 6 5.3502 2.6078 1.3434 24 8 6.3488 2.3788 0.7029 25 8 5.4352 2.8194 2.6662 26 6 3.3636 1.2631 0.7147 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8900 30 1 1.2532 1.8463 -1.9446 31 1 2.8495 1.0575 -1.9700 32 1 2.2584 3.8631 -0.9220 33 1 3.0590 3.4741 -2.4633 34 1 5.8716 4.2252 -0.2983 35 1 5.1295 4.5416 -1.8850 36 1 5.3784 6.9033 -0.7516 37 1 2.7612 7.8056 -0.1925 38 1 3.6263 7.6035 1.3499 39 1 2.3300 11.0469 1.5021 40 1 6.3172 2.7829 3.0609 41 1 4.0129 0.5394 0.2218 42 1 3.2170 0.9719 1.7549 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599125060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:15 Heat of formation + Delta-G solvation = -165.273069 kcal Electronic energy + Delta-G solvation = -25618.241112 eV Core-core repulsion = 21791.580359 eV Total energy + Delta-G solvation = -3826.660753 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.00970 -39.39738 -38.61629 -36.82647 -35.97523 -34.28889 -32.74070 -32.34871 -31.41556 -28.42471 -27.09123 -25.91506 -24.84958 -23.34512 -22.38226 -21.35329 -20.08969 -19.73758 -18.18761 -17.48826 -16.95324 -16.31403 -16.03167 -15.94510 -15.49246 -15.24770 -15.05990 -14.90747 -14.68390 -14.57728 -14.15432 -13.42422 -13.31341 -13.03360 -12.75995 -12.50048 -12.12937 -12.09163 -11.95815 -11.78661 -11.52689 -11.39947 -11.07684 -11.02159 -10.96200 -10.83818 -10.69050 -10.42583 -10.32112 -9.92474 -9.62697 -9.45232 -8.81146 -8.03924 -7.98352 -6.23373 -4.30609 2.13851 2.83053 3.12543 3.19251 3.26710 3.29650 3.61461 3.81989 4.00016 4.31379 4.64720 4.70084 4.92920 5.04134 5.13109 5.18256 5.19794 5.25173 5.31958 5.34938 5.36923 5.45141 5.52685 5.57267 5.63449 5.79000 5.85805 5.91784 6.00669 6.25499 6.45827 6.75279 6.88463 7.05020 7.19443 7.30487 7.41484 7.57707 7.88748 7.91521 8.48127 8.67010 8.93663 9.36220 10.86730 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.003594 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.304289 B = 7789.397862 C = 8466.188138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.092 3.908 4 H 0.068 0.932 5 C -0.135 4.135 6 C 0.041 3.959 7 N -0.495 5.495 8 C 0.020 3.980 9 C 0.464 3.536 10 O -0.558 6.558 11 N -0.705 5.705 12 C 0.248 3.752 13 C -0.545 4.545 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.081 3.919 22 H 0.113 0.887 23 C 0.486 3.514 24 O -0.500 6.500 25 O -0.513 6.513 26 C -0.099 4.099 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.392 0.608 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.409 0.591 41 H 0.085 0.915 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 -17.706 -2.231 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.034 3.966 4 H 0.086 0.914 5 C -0.173 4.173 6 C -0.086 4.086 7 N -0.219 5.219 8 C -0.111 4.111 9 C 0.248 3.752 10 O -0.440 6.440 11 N -0.353 5.353 12 C 0.127 3.873 13 C -0.583 4.583 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.208 1.208 21 C -0.028 4.028 22 H 0.131 0.869 23 C 0.327 3.673 24 O -0.387 6.387 25 O -0.324 6.324 26 C -0.137 4.137 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.225 0.775 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.268 0.732 41 H 0.103 0.897 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.212 -18.325 -2.322 18.473 hybrid contribution 0.781 2.005 0.311 2.174 sum 0.569 -16.320 -2.011 16.453 Atomic orbital electron populations 1.22786 0.81082 1.02519 1.00203 1.87880 1.19630 1.27732 1.95115 1.22100 0.94140 0.84507 0.95835 0.91407 1.22074 1.00913 0.97341 0.96976 1.22361 0.89605 0.97385 0.99294 1.62222 1.20420 1.28158 1.11118 1.22499 0.98045 0.86764 1.03841 1.21777 0.87080 0.85195 0.81109 1.90537 1.24523 1.83205 1.45717 1.46615 1.25265 1.07123 1.56292 1.19131 0.91174 0.82961 0.93987 1.21259 1.07450 0.91209 1.38366 0.91824 1.24953 0.94907 0.99506 0.94621 1.69975 1.17096 1.28433 1.36744 0.86354 0.79524 0.82955 0.78059 1.19592 1.20747 1.20758 1.21359 0.91257 0.99925 0.90291 0.86932 1.23267 0.91895 0.72002 0.80134 1.90693 1.38441 1.43812 1.65766 1.84573 1.39887 1.83536 1.24385 1.21499 0.95777 0.94647 1.01767 0.93974 0.89772 0.93907 0.91118 0.90302 0.90314 0.90055 0.87515 0.87348 0.77506 0.95484 0.95521 0.92458 0.73211 0.89684 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.38 -4.50 10.35 -35.23 -0.36 -4.86 16 3 C 0.09 1.09 2.68 -26.61 -0.07 1.02 16 4 H 0.07 0.83 7.79 -51.92 -0.40 0.42 16 5 C -0.13 -1.55 5.71 -26.65 -0.15 -1.70 16 6 C 0.04 0.54 4.99 -3.83 -0.02 0.52 16 7 N -0.49 -7.06 4.45 -229.51 -1.02 -8.08 16 8 C 0.02 0.29 5.46 -4.98 -0.03 0.27 16 9 C 0.46 8.66 7.23 -10.98 -0.08 8.58 16 10 O -0.56 -11.88 11.65 5.56 0.06 -11.82 16 11 N -0.71 -14.26 5.55 -61.47 -0.34 -14.60 16 12 C 0.25 6.38 5.43 -5.19 -0.03 6.35 16 13 C -0.54 -14.50 9.28 -34.44 -0.32 -14.82 16 14 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 17 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.08 1.16 1.96 -68.87 -0.14 1.03 16 22 H 0.11 1.87 5.75 -51.93 -0.30 1.57 16 23 C 0.49 6.94 6.40 36.01 0.23 7.17 16 24 O -0.50 -7.96 15.90 -18.75 -0.30 -8.25 16 25 O -0.51 -6.22 13.42 -39.27 -0.53 -6.75 16 26 C -0.10 -1.22 5.01 -26.65 -0.13 -1.35 16 27 H 0.04 0.34 7.94 -51.93 -0.41 -0.08 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.35 8.09 -51.92 -0.42 -0.07 16 30 H 0.07 0.72 7.94 -51.93 -0.41 0.31 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.26 5.62 -51.93 -0.29 0.97 16 33 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 34 H 0.11 1.59 5.80 -51.93 -0.30 1.29 16 35 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.41 3.04 9.10 45.56 0.41 3.45 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -32.79 343.26 -6.72 -39.51 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.38 Total: 8.95 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 0.26 Total: 10.08 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.63 Total: -47.58 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.13 Total: -31.69 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.79 -6.72 -39.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599125060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.762 kcal (2) G-P(sol) polarization free energy of solvation -32.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds